Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              <-----------GT1      <---------TOE2(2) ------>MYB83                                                                                   ----- ------>MYB46(1)                                                                                <---- ------->MYB46(3)                                                    <----------DOF2         <------- ------->AtMYB61                                              --------->ANAC46               <------- --------MYB111(1)                                      --------->CCA1(2)        --------->ANAC58 --------MYB111(2)               <---------ANAC58      <---------ARR11(3)        --------->ANAC58   - --------MYB46(2)           ------->TEIL               --------->AHL20(1)      --------->MYB52(1) <-- --------MYB55(2)  ----------->HVH21           --------->GLK1(2)  --------->ANAC58  --------->ARR14(2) ------>ANAC46  --------->GLK1(2)<---------ANAC58  --------->LBD16--------->ANAC58  <---------ARR14(2)   accaaacccatgtttcacaatctgacaatgaacttgcttcccttcggagaacccgaatatataagcgcaagctttcaatacaaacggaaacgtatgctta  21945000                                                                            <-------MYC2                                                                            <-------MYC4       <---------ARR14(2)                                                   <-------PIF5       --------->ARR14(2)                ---------->DOF2                    ------->MYC3     ----------->ARR10                --------->YAB1                        ------->PIF5 ---->ARR14(2)                    ---------->DOF2                           ------->MYC2 -----ARR14(2)                   --------->WRKY18(1)               <---------ICU4    <---------YAB1 --ANAC58 <-----------GT1      --------->LBD16                  --------->YAB1     --------->YAB1 --ANAC58<-------TEIL         <---------HSFB2a(2)        <---------ANAC58   <-------MYC3 -------->LBD16               --------->HSFB2a(2)        <---------ANAC58   <-------PIF4 -------LBD16                <---------LBD16         <----------DOF2        ------->PIF4   --------->ALFIN1   tccggtgaagattcacctctctctaacattttccggtaaagcataaaggcttcttctttccttgaaacatcatgagcacatgctcttataagagtgttcc  21945100                                                        <------NtERF2                                                    <-----------HVH21                                                   <---------bZIP60(1)                                                   <---------bZIP60(2)                                                ----------->HVH21                                               <---------WOX13(1)               --------->ARR14(2)                                          --------->ANAC55(2)                   --------->ARR11(3)                                          --------->ANAC46                      <---------ARR14(2)                                          <---------ANAC55(2) <------ZmHOX2a(1)<------ZmHOX2a(1)                                    --------->LBD16--------->O2           --------->ALFIN1                                   --------->ANAC58<---------O2  <------ZmHOX2a(1)                                   --------->ANAC55(1)<---------DEAR3(1)<---------At4g35610           <---------TOE1(3)       --------->ANAC58--------->TGA1a      --------->At4g35610           <---------TOE2(3)       --------->ANAC46--------->bZIP60(1)  --------->ZAT2  ---------->DOF2                 <---------LBD16  <---------TGA1a      <---------ZAT2 <---------ANAC46   acatgaaagagctatggttttcgatggagtcgaaaacccggaacgcgtaattgacgtcggagaaggaggaagagagctggaggattttgccgtagagaaa  21945200              <-----------RAV1(2)                       <---------At4g35610             ------>ZmHOX2a(1)                          --------->At4g35610                         <         --------->ARR14(2)                             <---------ZAT2                             <-         <---------ARR14(2)                             --------->ZAT2                          <----      --------->LBD16                              <---------ANAC46                           <------     <---------ANAC46      --------->SPL7          <---------ANAC58                           -------     <---------ANAC58      <---------LBD16 ----------->HVH21                             ----------->GT1     <---------ANAC58  <---------------AtSPL8      <---------ANAC58                     <------ZmHOX2a(1)     <---------ANAC55(1) <---------SPL7  <---------ANAC46                             <---------TOE2(3)    <---------LBD16 --------->MYB111(1)  <---------ANAC58                         --------->At4g35610   --------->ALFIN1<--------P            <---------ANAC58                         <---------At4g35610   cagagttgcgggttcctcagggtaagtagtacggagagtgaaggcgtgaagttgcttgagctgagacatgtctgaacatgtttctgctaaggagaaaata  21945300                        --------->At4g35610                        <---------At4g35610                   --------->ALFIN1                  --------->ATERF1(1)                  <-------GAMYB                 <---------DEAR3(2)                <---------DREB2C(2)                <---------DEAR3(1)               <---------ABI4(1)              --------->LBD16             --------->ATERF1(2)           --------->MYB52(1)                    --------->CCA1(2)       <---------MYB46(3)                       --------->ARR14(2)      <---------YAB1<---------MYB46(3)          <---------ARR14(2) <------MYB83<---------ATERF1(2)            --------->ALFIN1           <-----------RAV1(2) <---------MYB46(3)<---------AtMYB61       <---------MYB52(1)      --------->ZAT18 <------MYB46(1)--------->ALFIN1         <---------DREB2C(2)       --------->WRKY38(1) ---------DEAR3(1)<------NtERF2          <---------DEAR3(1)       --------->ALFIN1                 -- --------MYB52(1)<---------MYB46(3)      --------->ATERF1(2)    <---------ANAC46              <------MYB83 ---TEIL<-------GAMYB <---------RAP2.6(2)<---------ATERF1(2)   <---------MYB46(3)             <------MYB46(1) ---ARR14(2)<---------LBD16       --------->ARR11(3)      --------->ARR11(3)                  ------- -->ARR14(2)--------->DEAR3(2)    <---------ARR11(3)   <------ZmHOX2a(1)                  <---------MYB46(3)   cgttggtgatggttaccggcggtggaggctgagggagaacttgccggtgggatatgaggagataatgggtggaccagaagaccgatagacattggatggt  21945400                                                                                          ------>MYB83                                                                                          ------>MYB46(1)                           <---------YAB1                                ------------>CBF --------->MYB52(1)                           <---------ATHB51                    ----------->GT1            --------->ARR14(2)                         --------->TOE2(3)      <----------DOF2<---------ANAC46           <---------ARR14(2)          <-----------RAV1(1)              --------->YAB1      <---------ANAC58         <---------MYB59      <---------YAB1    ----------->GT1  -------->P <---------TOE2(3)   >>>>>>>>>>>>>>>>>LFY ------->ICU4    ----------->GT1       --------->MYB46(3)      <---------ANAC58      <-----------GT1 ---->GT1 <---------MYB46(3)       --------->MYB46(3)       <---------GLK1(1)<---------ATHB12   -----   aataagttatagttgttggaggtgaaacgataattgaacgaacaaccatactttaagtttggaattcgtgaaaaaaccaatgtttttaaaccgaaccgga  21945500                                                                                     --------->ATHB12                                                                          <---------AHL20(1)                                                                          --------->AHL20(2)                                                                          --------->AHL20(1)                                                             --------->AHL20(1)      <---------ICU4                                                         <---------AHL20(2)          --------->YAB1                                                         --------->AHL20(2)<---------AHL20(2)                                                        --------->AHL20(2)<---------AHL20(2)     <---                                                        <---------ATHB12  --------->ARR11(3)     ----              --------->ANAC58                ------->GAMYB<---------TOE2(3)        --------->ICU4        --------->SPL7                      <---------At5g28300           <---------ARR11(3)    <----    <---------LBD16                        --------->MYB52(1)<---------AHL20(1)     <---------YAB1   --------->MYB52(1)              <------------CBF   --------->WOX13(1) --------->AHL20(2)     <---- ---->SPL7    --------->ANAC58    --------->ATHB12  ------------>CBF   --------->AHL20(2)       -----   tggcaaaccggatggcaagcaagactactcatcgagtcattggattaaccgagagtcaattaatatttttaaaaaatatatttagaatgattatctaatt  21945600                                                                   <---------YAB1                                                                   <---------AHL20(2)                                                                  --------->AHL20(1)                                                                  <---------AHL20(2)                                                                  <---------AHL20(1)                                                              <---------YAB1                                                             --------->AHL20(2)                                                             <---------AHL20(2)            <---------ARR11(3)                               --------->AHL20(1)            <---------GLK1(2)                               --------->YAB1      <-----------GT1           --------->LBD16         --------->AHL20(2)     --------->AHL20(2)        --------->RAP2.6(2)      <---------AHL20(2)  <---------AHL20(2)       ---------->DOF2              --------->AHL20(1)  --------->AHL20(2)     --------->At5g28300            <---------AHL20(1) <---------AHL20(2)    <---------TOE2(3)               --------->AHL20(2) --------->AHL20(2)   <---------At5g28300              <---------AHL20(2)                 <---------ARR11(3) <---------AHL20(1)   <---------LBD16              --------->AHL20(2)          <---------WOX13(1) ------AHL20(2)      --------->MYB52(1)            <---------AHL20(2)       <---------AHL20(2) ----->AHL20(2)      <-----------GT1               --------->AHL20(1)       --------->AHL20(2) -----AHL20(2)  <---------AHL20(2)            --------->AHL20(2)  --------->AHL20(2)      --------->ARR11(3) -----AHL20(1) --------->AHL20(2)            <---------AHL20(2)--------->YAB1 <------------CBF<------ ---->AHL20(2) <---------AHL20(2)            --------->AHL20(2)--------->AHL20(2)  ------------>CBF   taattaatttactagattttaatttacggtaaaccgcaaaactatatttaaaataaaataaattataatataattcgtttaattgatcaatagattttac  21945700                                                                       --------->AHL20(2)                                                            <---------AHL20(2)                                                            --------->AHL20(1)                                                           --------->ATHB51                                                           <---------ICU4                                                 <---------AHL20(2)   <---------AHL20(1)                     <---------------AtSPL8     --------->AHL20(2)   --------------->AGL15                 <---------AHL20(2)         <---------YAB1 <---------AHL20(2)                 --------->AHL20(2)  <---------AHL20(2)   <---------YAB1             <---------AHL20(2)    <-----------TBP   --------->YAB1  <---------------AGL15            <---------AHL20(1)   <---------AHL20(2)  ----------->GT1<-----------------AGL3            --------->AHL20(1)  <---------YAB1  <-----------TBP ----------->GT1          XXXXXXXXXXXXXXXXXXXX>MIR857--------->AHL20(2) <---------ICU4--------->AHL20(1)  <------------CBF   --------------->AtSPL8------------>CBF--------->AHL20(2) -----GT1<-----------TBP ------------>CBF <-----------GT1 --------->ICU4      ---------->DOF2   aacctattgttttatatatttaaaatgtacaatttttatttatattacaattttatagtaattattttgtaatatatatagaaagaaaacgtagaacggt  21945800                                                                   --------->AtMYB61                                                                   ------->GAMYB   --------->ANAC46                                                                  --------->MYB46(3)                                                                  <---------MYB55(2)                                                                 --------->ANAC58  --------->ANAC58                                                                 --------->ANAC58  --------->ANAC58                                                                 -------->P     <---------ATHB12                                                      --------->GLK1(1)        --------->ANAC58                                        <---------ANAC58   <-----------HVH21   --------->ANAC58                                        <---------ANAC58  <-----------RAV1(1)  --------->ANAC46                            <---------WRKY18(1)       <---------GLK1(1)     --------->MYB46(3)  <----                            --------->ATHB12         <---------ARR14(2)  ---------->DOF2--------->ANAC58    ------->TEIL          <----------DOF2           <------ZmHOX2a(1) --------->AtMYB61 --------->ANAC58   agcatgaaccctatccaactggtaacagcttgactggccaaggcttacattggaggatttctgtcgcaaccaccaaaaaccactcaagacactccaagct  21945900  Previous    Next  AGI:  At1g59720.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41014.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN62088.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 21943417    to: 21945449    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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