Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                --------->ANAC58              --------->ANAC58              --------->ANAC46            <---------ALFIN1        --------->At4g35610        --------->ZAT2                                <------NtERF2        <---------At4g35610                          --------->LBD16       <-----------RAV1(1)                          --------->LBD16     --------->At4g35610                            <---------LBD16     <---------At4g35610                            --------->ETT(1)                            <----    <-----------RAV1(1)                        <----------DOF2                                 <----- ----->GT1 <---------At4g35610      <------ZmHOX2a(1)------>NtERF2                    ------>NtERF2 ---AtMYB61<---------ZAT18       --------->MYB52(1) <---------ANAC46                 --------->ANAC46 -->ALFIN1 --------->ZAT14     <---------MYB52(2)  <---------LBD16                 <---------At5g28300 >ALFIN1<---------ZAT2    --------->AtLEC2   ------>ZmHOX2a(1)  <----------ID1    <-----------GT1   tcatatgtgctgctgcacaccatgctccttgcaactaaggacctgtcctctttgccgggaacgaatacaacaagttttgaaaatttaccgccattgaagg  21887300                        --------->ZAT18                                                            <-                     --------->ANAC46                                                        <-------                     --------->ANAC58                                                  <---------AHL20(2) --ZmHOX2a(1)        --------->ANAC58                            --------->YAB1       <---------AHL20(2) -----ID1        <-----------GT1                    ---------->DOF2<---------YAB1     --------->AHL20(2)   acaaaactcagaacgatttttacaagcgaacaattactagtcttgtacatatagtaaagcctttgtatcatgagtttttgactagaaatttttttgcatt  21887400                                                                       <-----------GT1       --------->ATHB12                                             --------->YAB1      <---------YAB1                                               <---------AHL20(2)  <---------GLK1(2)       --------->AHL20(2)            <---------TOE2(3)--------->ANAC55(2)    ----- --------WOX13(1)         <---------AHL20(2) <-----------GT1----------->GT1          --------->AHL20(2) --AtLEC2<---------WOX13(1)             ----------->ARR10<---------ATHB12<---------ANAC55(2)  -------   gatagattgtgattgaacaaatgctaatataaatttcaagcttagatttacatttactaatgaagttatataatcacgtttcgatgttaaaataagaagt  21887500                                                                                   <---------ALFIN1                                                                                <-------PIF5                                                                                ------->PIF5                                                                               <---------TGA1a                                                                               --------->ANAC58                                                                               ==================bZIP_DOF                                                                               --------->ANAC58                                                                               --------->TGA1a                                                                            <---------MYB52(1)                                                                           <-----------HVH21                                                                           ------>NtERF2                                                                           --------->LBD16                                                                          <xxxxxxxxxxxxxxxsmallRNA(si3)                                                                          --------->ANAC46                                                                          <xxxxxxxxxxxxxxxsmallRNA(le3)                                                                          <xxxxxxxxxxxxxxxsmallRNA(fl3)                                                                         <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                         <xxxxxxxxxxxxxxxxsmallRNA(le3)                                                                         <---------LBD16 *TSS                                                                         <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                         <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                        <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                        <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                        <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                        <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                        <xxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                       <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                      <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                      <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                      <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                      <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                      <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                ------>NtERF2                        <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                               <xxxxxxxxxxxxxxxxsmallRNA(s)          xxxxxxxxxxxxxxxx>smallRNA(s)                               --------->LBD16                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                             --------->LBD16                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                             <---------LBD16                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            <xxxxxxxxxxxxxxxxsmallRNA(s)             <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                         --------->TOE1(2)                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        <---------HSFB2a(1)                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        ----------->RAV1(2)                         --------->MYB46(3)<---------DAG2                        <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                        --------->HSFB2a(1)                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                       ------->TEIL                                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                      <xxxxxxxxxxxxxxxxsmallRNA(s)                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    <xxxxxxxxxxxxxxxxsmallRNA(s)                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  <xxxxxxxxxxxxxxxxxsmallRNA(le3)                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  <xxxxxxxxxxxxxxxxxsmallRNA(se3)                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <xxxxxxxxxxxxxxxxsmallRNA(s)                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                 --------->ARR14(2)                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                 <---------ARR14(2)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                <------ZmHOX2a(1)  ---------->DOF2                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <xxxxxxxxxxxxxxxxsmallRNA(s)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               <xxxxxxxxxxxxxxxxsmallRNA(s)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              <xxxxxxxxxxxxxxxxsmallRNA(s)                       <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             <xxxxxxxxxxxxxxxxsmallRNA(s)                        <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <xxxxxxxxxxxxxxxxsmallRNA(s)                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          --------->ANAC58  <---------ANAC46                     <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          --------->ANAC58  <xxxxxxxxxxxxxxxxsmallRNA(le3)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          --------->ANAC46 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <xxxxxxxxxxxxxxxxsmallRNA(s)   <---------ALFIN1        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---------DOF5.7(2)<xxxxxxxxxxxxxxxxsmallRNA(s)     <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      --------->DOF5.7(2)--------->TOE2(2)    --------->ATHB12   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)    <---------ANAC55(2)<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->LBD16<---------ALFIN1  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ------>GT1<xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxsmallRNA(si3)<---------ALFIN1 <----------DOF2 ---->GT1<xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxsmallRNA(i2)xxxxxxxxxxxxxxxx>smallRNA(i)   -   gaaaaaacgtgaacggcaggattcgaacctgcgcgggcaaagcccacatgatttctagtcatgcccgataaccactccggcacgtccactttttgttaat  21887600                               <---------ICU4                               -------->HAHB4                               --------->YAB1                               -------->ATHB1                               <--------HAHB4                               --------->ATHB51                              <---------ATHB51                          <---------MYB52(1)                          --------->DOF5.7(2)                         <-------GAMYB                      <---------At5g28300              --------->ARR11(3)              <---------ARR11(3) <---------YAB1             --------->CCA1(1)--------->ICU4   <------MYB83             --------->RVE1(1)<---------YAB1   <------MYB46(1)       --------->YAB1<<<<<<<<<GT-2<-----------GT1       --------->TOE2(3) --------->TOE2(3)   --------->ALFIN1                <---------GLK1(2)  -----     <---------ARR11(3) ----------->GT1      <--------P              ---------->DOF2   <------ZmHOX2a(1) ----->ZmHOX2a(1)    <-----------GT1     <-----------RAV1(2)   ---------->DOF2       ----------------   tcctcactatcttaaatatctaattaccgttaattattacaaatcaggttgggcttaattaagcccaaagttaaagacagattagtgaaggagacagaga  21887700                                                       --------->WRKY38(1)                                                       --------->WRKY45                                                       --------->WRKY12                                                      --------->DOF5.7(2)                                                    <---------ANAC46                <-----------ARR10                                                    <---------ANAC58               <---------CCA1(2)                                                    <---------ANAC58           ------>MYB83                                             <-----------HVH21                 ------>MYB46(1)                                            ------->GAMYB                     --------->ANAC58                                         --------->MYB52(1)  ------>MYB83     --------->ANAC46        *TSS   --------->YAB1            <---------DOF5.7(2) ------>MYB46(1) --------->MYB46(3)     --------->At4g35610                <---------WRKY12     <---------CCA1(2)--------->ANAC58 ----->DOF2    ----------->GT1          <---------WRKY38(1)<---------MYB59  <---------At4g35610    == -------->ANAC81                        <---------WRKY45<---------WRKY18(1) --------->At4g35610    --   aagaaacagctctaaaatggtaatgaacgagaaactagagagtcaacggtcatagcgttgaccaaatctctcactctcaccagccaaatctctccaactt  21887800                               <-----------HVH21                              ------>ZmHOX2a(2)                        --------->LBD16                        <---------ATERF1(1)                        ------>NtERF2                       <---------DEAR3(1)                       --------->ATERF1(2)                       <---------ATERF1(2)                      --------->MYB52(1)                       --------->DEAR3(1)                      <---------WRKY38(1)                      <---------LBD16        <---------YAB1  --------->ANAC58                      --------->ATERF1(1) <---------ARR14(2) --------->ANAC58                --------->ARR14(2)        ------->TEIL     <---------ALFIN1               <---------CCA1(2)          --------->GLK1(2)--------->ZAT6           --------->ANAC58  <------ZmHOX2a(2)           ----------->RAV1(1)                        >           --------->ANAC46 --------->ARR14(2)           <---------ALFIN1                      ------           --------->ANAC58 <---------ARR14(2)    <---------ANAC58                            <------ZmHOX2a(2)         <---------ALFIN1<------NtERF2    --------->ARR14(2) --------->ANAC46                -------- <----------DOF2<-----------ARR10   ----------->HVH21   --------->ANAC46 --------->At4g35610 <------- ===================================HOX2a_HOX2a   <---------ANAC58       <---------At4g35610 <------- ---->ZmHOX2a(1)<---------ARR14(2)  ----------->TGA1---------->ID1    <--------P             --------   cctctttctctccacccaaatctcgccggcgatcgtcactgacgaatctgattcgtccccaacactcaacgggtaagctctctctgcaaaattcagatcg  21887900         --------->TOE2(3)                                          <---------YAB1         --------->TOE2(3) >>>>>>ZML2                                                       --------->ATHB12      <-----------GT1 >ZmHOX2a(2)                                                      <--------HAHB4   <---------AHL20(1) ->ARR14(2)                      <----------DOF2                  <---------ICU4   <---------AHL20(2) --ARR11(3)                 <-------TEIL                         <---------YAB1    --------->AHL20(2) --ARR14(2)             <---------YAB1   <----------DOF2   <----------DOF2         --------->AHL20(1) ->ARR11(3)          <------ZmHOX2a(2)---------->ID1  ---------->DOF2      --------->GLK1(1)     ----   ttctagctcaatctcaacatcggatcaagattcaacttttgttcttttctcttaaacaaagcttttgatcattagtgaaatctaaaatattaacctttga  21888000                                                            <---------ANAC55(2)            <---------ANAC46                                                            --------->ANAC55(2)          <---------ANAC46                            <---------ARR11(3)          <-----------HVH21              <---------ZAT14                --------->HSFB2a(2)              <----------DOF2                    <---------ANAC46            --------->TOE1(3)<------ZmHOX2a(2)  ------>ZmHOX2a(2)                --------->GLK1(2)           <---------At4g35610                --------->ARR11(3)     --------->ANAC58  --------->ZAT14 --->TEIL <---------TOE1(3) --------->ARR11(3)<---------ARR11(3)     --------->ANAC58 <-----------RAV1(1)   atctgtaaacttaagcttagagaaccctaagatcaaaactaaaaatttgatctttcattgtcacttgttggaagcaattcaaaattctgtgttgtgtata  21888100                              --------->DAG2                             ---------->DOF2                  ----------------->AGL1                                                            =               --------->KAN4(2)                         <---------ANAC58                    ------>ZmHOX2a(1)              <---------HSFB2a(1)                        <---------ANAC58                    ========              <---------KAN4(1)                  <----------DOF2       <------ZmHOX2a(1)--------->ATERF1(1)              --------->HSFB2a(1)            <-----------GT1    <---------YAB1         <---------ATERF1(1)              --------->KAN4(1)           <---------YAB1 <---------ANAC46              ------>NtERF2-              <---------MYB46(3)    <---------YAB1  <-----------RAV1(1)==============================   ttttcaaatttgtggattgttccaatttcgataaagttttgatttttattccttttgttgtgtgtttttataaggaggtagaagaatggcgactcctgtt  21888200  Previous    Next  AGI:  At1g59560.1    Description:  ZCF61; protein binding / zinc ion binding. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G63900.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22469.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 21885264    to: 21887457    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g59570.1    Description:  pre-tRNA. tRNA-Ser (anticodon: AGA) Range:  from: 21887508    to: 21887589    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g59580.1    Description:  ATMPK2 (MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2); MAP kinase/ kinase. Identical to Mitogen-activated protein kinase 2 (MPK2) [Arabidopsis Thaliana] (GB:Q39022;GB:Q9LQ58); similar to ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G10210.1); similar to ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G10210.2); similar to mitogen-activated protein kinase [Gossypium hirsutum] (GB:ABA00652.1); similar to double HA-tagged mitogen activated protein kinase 1 [synthetic construct] (GB:ABG54328.1); similar to double HA-tagged mitogen activated protein k Range:  from: 21887708    to: 21889716    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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