Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        <<<<<<<<<ARR2                    --------->WOX13(1)                   --------->MYB46(3)              <---------ANAC58              <---------ANAC58                                                                    ---           <--------P <---------ATHB12                                                            ---          <-------GAMYB                      <----------DOF2                                 --------         <---------MYB46(3)             <---------At4g35610                           <----------DOF2       <---------ANAC58             <-------TEIL --------->ZAT6                  ------>MYB83--------       <---------ANAC46            --------->CCA1(2)                           <---------MYB46(2) <--       <---------ANAC58--------->YAB1   <---------ZAT2                         <---------MYB59    <-- <---------YAB1<---------MYB59     --------->GLK1(2)           <---------ARR14(2)------>MYB46(1)  <--   ctcactattgctggttgcctaacaatcaaacctcgagattcaagctgctttacactatagaagaagttccttccatcgataccaaactctttcgcaagca  21856600                                                                     ----------->GT1                                              --------->YAB1        --------->DAG2                                              <-----------GT1      ---------->DOF2                                             <---------YAB1     <---------------AGL15                                           <---------ICU4       --------------->AGL15 ------>ARR14(2)                           --------->YAB1    --------->MYB52(1) ------>ARR11(3)                      <---------MYB52(1)   <<<<<<<<<<AtMYB44 ->ANAC58                           ----------->GT1        <---------MYB59                     ------ ->ANAC58  <---------YAB1           <---------ZAT6         <------------MYB.PH3(2)         -------->P -------GLK1(2)                 <---------ARR14(2)         <---------MYB52(2)         <-----------GT1 -------ARR11(3)                --------->ARR14(2)         <---------MYB111(1)       <-----------GT1 -------ARR14(2)            ------->TEIL  --------->ICU4   <---------MYB46(2)     ------->TEIL ------   gattttgtgcatcaccattgtctctacatgaacatatactgttaattatcacaactctgtaactaactataaagtgaaaacatgaatttaacttacctag  21856700                                                                         --------->MYB52(1)                                                                     --------->ANAC46                                                                     --------->ANAC58                                                                     --------->ANAC58                                             <---------ZAT6        ---------->DOF2                                           <---------ANAC58    <---------ANAC46                                           <---------ANAC58    <---------ANAC58                                  --------->LBD16              <---------ANAC58                                 <---------ANAC46             --------------->AtSPL3           <-----      --------->MYB52(1)         <---------LBD16             <---------ARR14(2)          <---------TOE1(2) >MYB83             --------->ANAC46  <---------KAN4(2)   <---------ANAC58         <---------At4g35610 >MYB46(1) <-------TEIL         <---------LBD16           <---------ANAC58        --------->MYB59   caatagccaaacgttcaagaacacgacgttgaatcgcgggaatagtcgtgttattcgattgagtatcgtacaagccaacgaagttagctcgtaagttctc  21856800                                                                    --------->SPL7                                                                    --------->ZAT14                                                                    <---------ZAT14                                                                  --------->LBD16                                                                --------------->AtSPL3                                                                ------>ZmHOX2a(2)                                                              <---------ARR14(2)                                                      --------->ARR14(2)       <---------GLK1(2)                              <---------ARR14(2)       <---------ARR14(2)                           <---------HSFC1(2)       --------->ARR14(2)                           --------->HSFC1(2)                            <--     ----------->ARR10      <XXXXXXXXXXXXXXXXXXXXMIR172A/B    --------->ARR14(2)                  --- <---------HSFB2a(2)        <XXXXXXXXXXXXXXXXXXXXMIR172C/D  <---------YAB1                        <-- ----YAB1            <---------ZAT6  <---------TOE2(3)--------->GLK1(2)         <<<<<<<<<TBF1     ---   attcgcgacgattctcaaatcgagtcttaaggcatcatcaaggttttgaatcgaagtatctgatgatccgtacactgtgttcttcttcgtcttgaattgg  21856900                                                                         --------->DAG2                                                                 ----------->HVH21                                                               <---------ANAC55(2)                                                               <---------ANAC58                                                               --------->ANAC55(2)                                                               <---------ANAC58                     <-----------GT1                           ====================bZIP_DOF         --------->TOE1(2)     ------->MYC3                    --------->TGA1a        ------>ZmHOX2a(2)      <-------MYC3                    <---------bZIP60(2)                  <      <---------ARR14(2)      --------->O2                     <---------TGA1a              ------>ZmHOX2a(1)      --------->ARR14(2)      <---------O2                     <---------O2             --------->GLK1(1) -------ZAT2      <---------GLK1(1)                            <---------bZIP60(1)      <---------GLK1(1) ------>At4g35610 --------->GLK1(1)<---------ANAC58            --------->bZIP60(1)     --------->GLK1(1) -------At4g35610--------->ARR11(3)<---------ANAC46            --------->O2  --------->MYB52(1)     < ------>ZAT2     <---------ARR11(3)<---------ANAC58    <------ZmHOX2a(1)---------->DOF2<---------GLK1(1)   agctgagggatcgtgagaagatttctccagacatgtgtcttgatggaagaagagagaggagagagacgtgaccataaagtaacgagagggattcctgtgt  21857000                                                                      <---------MYB59                                                                      ------->GAMYB                                                                  <---------WRKY12                                                                  <---------WRKY38(1)                                                                 --------->WRKY18(1)                                                                <-----------HVH21                                                               <------MYB83                                                               <------MYB46(1)                                                         <---------TOE1(3)           <---------MYB52(1)                                 <---------YAB1          <---------TOE2(3)       <---------At5g28300                         <---------ANAC46    <---------CCA1(2)--------->MYB59    <-----------------AGL1            --------->GLK1(1)    <---------AHL20(2)--------------->AGL15    <---------AHL20(2) ---------ANAC58       <---------ZAT14  --------->ARR14(2)    --------->MYB46(2)<-----------GT1    -- ---------ANAC58       --------->ZAT14  <---------ARR14(2)<---------ZAT6    --------->AHL20(2)   <---   ttccttgagaacagatttcatcaagtgctgtggatataatcgaatccatctctctagttagggttaggtcaaccgaatttttttaccgatagggaattag  21857100                                                                                                   --                                                                                                 <---                                                                                                =====             <-----------HVH21                                                                  <----            --------->At4g35610                   <---------HSFB2a(2)              --------->At4g35610            --------->TGA1a                 <------ZmHOX2a(1)                      <---------At4g35610            <---------At4g35610        <---------DEAR3(1)                    --------->ALFIN1  <-----     <---------GLK1(1)         --------->ARR14(2) --------->HSFB2a(2)       <---------ZAT2   <------NtERF2 --------------------->TaNAC69(2)    <-----------HVH21       <-----------TBP<-------GAMYB  <---------ANAC46 ------MYB52(1)            --------->YAB1<------NtERF2 <------------CBF--------->ALFIN1 <---------RAP2.3(3)   ttagtcgatttctcaggtcactgggaaaatcaaaatactcgtcggaggagttttggaaattggatttatacaagtgggagttgggagatgagggcgggat  21857200                                                                                       --------->AHL20(2)        <---------MYB46(3)                                                             <---------AHL20(2)      <-------GAMYB                                                                 <---------ARR11(3)     <---------MYB46(3)                                                             --------->ARR11(3)    <---------DEAR3(1)                  <---------ANAC46                 <---------AHL20(2)  ------------>AtMYB77                  <---------ANAC55(1)           --------->ARR11(3)       ------  <------ZmHOX2a(1)                     <---------ANAC58              <---------AHL20(1)       <----- ----------->HVH21                   ----------->HVH21                <---------ARR11(3)       <----- ------->At4g35610                   ----------->TGA1                 <---------AHL20(2)    <-------- --------RAV1(2)              --------->ARR11(3)  ------>ZmHOX2a(2)   --------->AHL20(2)   --------->AHL20(2) ========HOX2a_HOX2a   --------->GLK1(2)<---------ANAC58              --------->AHL20(1)  <---------YAB1 --ZmHOX2a(2)         <---------GLK1(2) <---------bZIP60(2)    --------->REM1(2)  ----------->ARR10 ------HVH21    ---------->DOF2     <-----------HVH21    --------->MYB52(1)      <------ZmHOX2a(1)  <   cagaggacggttgtgagagaaagagattctgagttcttggtgacgggttcgatctgaaacaactgtgaagaatatattaatgaggagattttattatata  21857300                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                              xxxxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                            <xxxxxxxx                                                                                           --------->WOX13(1)                                                                                           <xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                      <---------ARR11(3)                                                                                      xxxxxxxxxxxxxxx                                                                                      --------->ARR11(3)                                                                                      <xxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                             --------->ARR11(3)                                                                             <---------ARR14(3)     x                                                                             <---------ARR11(3)    <x                                                                             --------->ARR14(3) <xxxx                                                                             <---------ARR14(2)<xxxxx                                                                           ----------->ARR10<xxxxxxxx                                                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                    xxxxxxxxxxxxxxxx>smallRNA(i) <xxxxxxxxxxxxxxxxxxx                                                   <---------MYB52(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                               <---------AHL20(2)  xxxxxxxxxxxxxxxx>smallRNA(i)  xxxxxxxxxxxxxxxxxxxx                               --------->AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxx     <---------ICU4            --------->AHL20(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxx     --------->ATHB12     <---------AHL20(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxx    <---------YAB1        --------->AHL20(2)   <---------At4g35610<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    --------->ICU4      <----------DOF2    <---------ICU4         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  --------->YAB1 --------->AHL20(1)        --------->YAB1         --------->AtLEC2 <xxxxxxxxxxxxxxxxx --->AHL20(2)    --------->AHL20(2)       <---------ATHB51  --------->ARR14(2)  xxxxxxxxxxxxxxxxxxxxx ----AHL20(2)    <---------AHL20(2)       <---------YAB1    <---------ARR14(2)<xxxxxxxxxxxxxxxxxxxxxx ----YAB1        <---------AHL20(1)   ------------>CBF      <---------GLK1(2)--------->ARR14(2)<xxxxx -AHL20(2)      --------->AHL20(2)--------------->AtSPL8   <------ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -----------GT1 <---------AHL20(2)<---------------AtSPL8xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxx   attaacatgattactaaattaaatttctttaaattttttgtacaattatagctgttcgtcaggattctatgcaagagaagatattgaagatgtccatcaa  21857400               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxsmallRNA(s2) xxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxsmallRNA(l2) xxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxsmallRNA(i2) xxxxxx>smallRNA(se3)                     <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxsmallRNA(fl3)                   <---------TOE2(3) xxxxxxxx>smallRNA(si3)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxsmallRNA(s2)                   <---------ICU4 xxxxxxxx>smallRNA(se3)             ------>ZmHOX2a(2) xxxxxxxxxsmallRNA(i2)              ===============HOX2a_HOX2a xxxxxxxsmallRNA(se3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxsmallRNA(le3)             <---------AGP1 xxxxxxxsmallRNA(l2)              --------->ARR14(2) xxxxxxsmallRNA(i2)               <---------ARR14(2) xxxxxxsmallRNA(le3)              <---------ARR11(3) xxxxxx>smallRNA(se3)        <---------ANAC46 xxxxxxxsmallRNA(i2)         <---------ANAC58 xxxxxxsmallRNA(se3)      xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxsmallRNA(l2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxsmallRNA(i2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxsmallRNA(i2)       <-----------RAV1(1)    ---------->DOF2 xxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxsmallRNA(le3)     <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxsmallRNA(i2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxx>smallRNA(l2)      xxxxxxxxxxxxxxxx>smallRNA(s)                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxsmallRNA(l2)   xxxxxxxxxxxxxxxx>smallRNA(i)                       <-----------GT1 xx>smallRNA(le3)     <xxxxxxxxxxxxxxxxsmallRNA(s)    xxxxxxxxxxxxxxxx>smallRNA(i)             <----- xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->YAB1              <xxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxsmallRNA(i)<-----------HVH21<------ZmHOX2a(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->ARR11(3) xxxxxxxxxxxxxxxx>smallRNA(i)    --------->ATHB51 xxxxxxxxxxxxxxxxxsmallRNA(i2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxsmallRNA(si3)<---------bZIP60(2) xxxxxxxxxxxxxxxx>smallRNA(i)        <---------ICU4 xxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------MYB52(1)   --------->ICU4 xx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxsmallRNA(i2)xxxxxxxxxxxxxxxx>smallRNA(s) <xxxxxxxxxxxxxxxxsmallRNA(i)     <---------YAB1 xxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     ------- xxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   -- xxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <xxxxxxxxxxxxxxxxsmallRNA(i)        ------- xx>smallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(i) ------>ZmHOX2a(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xsmallRNA(i2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(i)   --------->YAB1  <-- xxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------CCA1(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  ----------->GT1 xxxxxxxxxxxxxxxsmallRNA(le3)<---------ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------YAB1------   gagcatagaaaatgagaagaggtatcgtctgtcgtggatctaataaggatcgaaaggaattgtccgtcgtctatgtaacagttctcataatttgtaataa  21857500  Previous    Next  AGI:  At1g59453.1    Description:  transcription factor-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G59077.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G58766.1); similar to ATP phosphoribosyltransferase -related [Arabidopsis thaliana] (TAIR:AT1G17450.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45637.1); similar to hypothetical protein OsI_008036 [Oryza sativa (indica cultivar-group)] (GB:EAY86803.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66433.1); contains domain ""Winged helix"" DNA-binding domain (SSF46785) Range:  from: 21850567    to: 21857049    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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