Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   <---------ICU4                                                ------>MYB83                                                -------->P                                       --------->ANAC46                                       --------->ANAC58                                       --------->ANAC58                                            --                                  ----------->HVH21                          ---------->DOF2       --                                <---------ANAC55(2)                       ----------->RAV1(1)      --  ------>ZmHOX2a(1)          <---------ZAT18    ------>MYB46(1)       --------->MYB46(3)           -- --------------->AGL15  ------>ZmHOX2a(1)      ----------->RAV1(1)   ------>MYB46(1)             ---- -----------------AGL1 --------->TOE2(3)     --------->MYB46(3)      ------>MYB83                <--- ->YAB1     --------->At4g35610 --------->ANAC55(2)                 ----------->RAV1(1) ------->TEIL<   gctcctctaatggcagtagcaacttccttagaacacttgacacccaaaccaacatgaccatttccatcaccaacaacaacaaaggccttgaatctagtcc  21810800                                                                                    <------MYB83     --------->ZAT2                                                                 <------MYB46(1)     <---------ZAT2                                              ------>MYB46(1)   <---------------AtSPL8     --------->At4g35610                                         -------->P------>ZmHOX2a(2) ------->WRKY38(1)                                               ------>MYB83      --------->MYB59 ------->WRKY12                                  <----------DOF2----------->RAV1(1)--------------->AtSPL8 ------->WRKY45                      --------->YAB1         ======================HOX2a_HOX2a --------->HVH21                  ------>ZmHOX2a(2)         <------ZmHOX2a(1)  --------->ATHB12 -->ZmHOX2a(1)                    =================================HOX2a_HOX2a<---------YAB1 -------DOF2  --------->MYB52(2)<---------ARR11(3)      --------->TOE1(2)<---------ARR11(3) ---------WRKY18(1)             --------->ARR11(3)      --------->TOE2(2)--------->ARR11(3) <--------   tttgaccagctctggtttgtttctgaacaggcatgatcttcataacctcgtctttcaacgtaggaccaacaagatgatctatgatttggtactcctttac  21810900                    --------->At4g35610                  ------>ZmHOX2a(2)                 <------ZmHOX2a(2)             --------->MYB46(3)                 --------->CCA1(2)            <---------At4g35610                <---------ARR11(3)           --------->ANAC46                                    <---                <---------AGP1               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               ------                --------->ARR11(3)   --------->AHL20(2)                                       -------                --------->AGP1       --------->AHL20(1)            <-----------HVH21     <---------ANAC58                --------->ARR14(2)   <---------AHL20(2)           <------MYB46(1)        <---------ANAC58                <---------ARR14(2)   <---------AHL20(1)           <------MYB83        <---------MYB52(1)              ----------->ARR10 <---------MYB52(1)        <-----------------AGL1    <---------ANAC58- --DOF2   <---------YAB1     <-------TEIL <-----------HVH21      --------->MYB59    <---------ANAC58-   tgggagagaatgaagatagatctgctctagcttcgttattttattgtcagccactagacgacctagtttggtcactggaacccatttcgtttcttccgag  21811000                                                                            ------>NtERF2                                                                   --------->DEAR3(1)                                                                 ------>NtERF2                  --------->ANAC46                              --------->DEAR3(1)                  <         --------->ANAC58                                 <-------PIF5     --------->ANAC58         -         --------->bZIP60(2)                             --------->ANAC46  --------->ANAC58       ---         <---------O2                             ------>NtERF2 --------->DREB2C(2)               ---         --------->ANAC46                         <---------ATERF1(1) --------->ARR14(2)         ----         --------->TGA1a                         --------->RAP2.6(2)  <---------ARR11(1)         ----         --------->ANAC58                        <---------ALFIN1--------->ABI4(1)               ----       <---------ALFIN1                      --------->ANAC58   ------->GAMYB                   -----    --------->RAP2.6(2)                      --------->ANAC58  --------->DEAR3(2)              <----- --------->DEAR3(1)                         --------->ATERF1(1)--------->MYB46(3)              <----- ------SPL7       --------->ANAC58         <---------ATERF1(1)<---------ATERF1(1)             <------ --->ANAC46       --------->ANAC58         <---------ALFIN1  <---------ALFIN1                 <------ -->LBD16--------->O2                    <-----------HVH21------->PIF5<-----------ARR10<---------REM1(2) -------->ANAC58 <---------LBD16    <------ZmHOX2a(2)  <---------ALFIN1    --------->ANAC46 <-------- -------->ANAC58<---------ALFIN1   <-----------HVH21--------->AtMYB61 <---------ARR14(2)<---------ALFIN1   gcacggcctccacgtcttccacggcctcttggaccacgatcacggccacggccacctccacgtccaccgccgaatccacgcccgaagtcaccacggtcac  21811100            --------->DEAR3(1)            --------->RRTF1(3)            --------->RAP2.3(2)           --------->DEAR4(2)           <------NtERF2           --------->RAP2.3(1)           --------->ORA47(2)          <---------RAP2.3(1)          <---------ATERF1(1)          <---------RRTF1(1)         <---------DEAR3(1)      ---------->CDC5  --------->ANAC58  <---------ALFIN1  --------->ANAC58 ------>NtERF2 ---------ALFIN1 -------->DEAR3(1) --->NtERF2--------->ATERF1(1) ------>ABI4(1) ----->DEAR3(1) ----->ANAC46 ----->DREB2C(2) ---->MYB46(3)        ------>ZmHOX2a(1) ----At5g28300 <----------DOF2  ------>NtERF2                   <-----------GT1 ----ATERF1(1) <---------DAG2   --------->LBD16              --------->ARR14(2) ---WRKY12------>NtERF2        --------->ANAC46              <---------ARR14(2) ---WRKY38(1)------>NtERF2 <----------DOF2             <---------STY1(1)      --------->AHL20(2)    < ---HVH21--------->ANAC46------>ZmHOX2a(1)          *TSS--------->MYB52(1)    <-----------TBP       <   cgccacgctctgcgccgctttctcctcctctttccgccattttcgatgaagtaaaccctagcggattcacaagttttagtttatataggtgagcataaga  21811200                                 <---------PCF2                                ----------->TCP11(1)                            --------->ALFIN1                                      ------>NtERF2                           <----------DOF2                                ---------->DOF2                          <---------ANAC58     <---------AHL20(2)   --------->ANAC46     --------->AHL20(2) ---------TOE1(3)         <---------ANAC58     <---------YAB1   --------->CCA1(2)<---------ATERF1(1) ---------TOE2(3)   --------->ATHB12<------NtERF2<------------CBF<-------TEIL  <---------LBD16   ttagggttttcgaaagtctgaattatgggcttgtgggccgaatgttgatataattgttttgttgagatacaaaccaagaagcccggcccaataacataac  21811300                      --------->ANAC55(2)                      <---------ANAC58                      <---------ANAC55(2)                 <---------------AtSPL3                 <---------------AtSPL8           --------->MYB46(3)                        <---------ANAC58           <---------------AGL15                 <----------DOF2           --------------->AGL15      <---------ANAC58            ------>ZmHOX2a(2)           ==========================================================================================          --------->ANAC46            <---------ANAC46  --------->ARR11(3)       <---------ANAC58          --------->ANAC58   --------->AtLEC2   <---------ANAC58--------->ARR11(3)            <------          --------->ANAC58 --------->CCA1(2)    <---------ANAC58<---------ARR11(3)         <---------          ----------------->AGL2     --------->ATHB12<---------ANAC58            <---------ANAC58         ------->GAMYB<---------ANAC58<---------ANAC58 <---------CCA1(2)        <-------TEIL  -------   ttattcaataacacccaatatagtacgtgatatgcaaattgagtggaattgctttgcttatcttgtgatcttaagaactatgtgcgtattgttttactat  21811400                                 <---------AtLEC2                                 <---------ANAC58                                 <---------ANAC46                  <---------ANAC58     <----------DOF2 --------->ZAT18                                                                <     <---------DAG2  <---------ZAT18                            <---------MYB46(3)                  - =========MADS_MADS  <---------ZAT14    ----------->GT1    <---------ARR11(3)             --------->ZAT14 ---------AGL15   <---------ANAC46    <---------ANAC58   --------->ANAC58                 <---------ZAT18 --GT1   --------->AtLEC2        <---------ANAC58 <---------GLK1(2)                       --------->ZAT18 -------->AGL15   <---------ANAC58    <---------ANAC58   --------->ANAC58    --------->AtLEC2   -----   ttagagactttatgcaaattgagtgcaattggtttgcttgtcttgtgaaacaaattctcaagacatttgttagacatttatgcaaaccattgtgaactca  21811500                                    <---------AHL20(2)                                   --------->ICU4                                   --------->AHL20(2)  ------>ZmHOX2a(2)              --------->YAB1                  <---------YAB1  ----------->GT1       <-------GAMYB                         ------->TEIL <------ZmHOX2a(2)     <---------MYB46(3)                <---------At4g35610                  ------- ---------ARR11(3)     --------->MYB55(2)                --------->At4g35610                  <------ -------->ARR11(3)     --------->MYB52(2)             ---------->DOF2       --------->At4g35610 ----->DOF2          <---------MYB52(1)   <-----------HVH21  <---------GLK1(2)              <--------   aagatcgtaaacaaatgtaattcgtttgttgtcagtaataaataggtcatacattttaaagctgaatctcattgtatcatctctcaaatggctagaattt  21811600                                                                                      --------->ANAC55(2)                                                                                      <---------ANAC55(1)                                                                                      <---------ANAC46                                                                               <XXXXXXXXXXXXXXXXXXXXMIR782                                                                             <-----------GT1                                                                            <-----------GT1                                                                           <---------AHL20(2)                                                                          --------->YAB1                                                                     --------->MYB46(3)                                                                    --------->ANAC58  <---------ANAC58     <----------DOF2                    <----------DOF2             --------->ANAC46  <---------ANAC58 -->HSFB2a(1)             <-----------------AGL1               --------->ARR14(2)  ----------->HVH21 ---HSFB2a(1)<-----------HVH21      <---------ZAT18            <---------ARR14(2) <---------MYB52(2)- -GLK1(2)   <-----------RAV1(1)   --------->ANAC46    <---------YAB1--------->ANAC58--------->MYB52(1)   tcttcggctttttagtgtcgcatcattctcttatttaggccactttccaattggttatgagggcgaatacaaccaattttaacatctaacgtgtttgtgt  21811700  Previous    Next  AGI:  At1g58983.1    Description:  40S ribosomal protein S2, putative. Identical to 40S ribosomal protein S2-2 (RPS2B) [Arabidopsis Thaliana] (GB:Q93VB8;GB:Q8L861;GB:Q9SM06); similar to 40S ribosomal protein S2, putative [Arabidopsis thaliana] (TAIR:AT1G58684.1); similar to XW6, structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G58380.1); similar to 40S ribosomal protein S2 (RPS2B) [Arabidopsis thaliana] (TAIR:AT1G59359.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23572.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79008.1); contains InterPro domain Ribosomal protein S5, eukaryotic/archaeal; (InterPro:IPR005711); contains InterP Range:  from: 21809685    to: 21811152    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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