Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    --------->YAB1                                                           <---------ICU4                 ----------->HVH21                                                        ------>MYB83             --------->MYB46(3)                                                           ------>MYB46(1)           --------->ARR14(2)                                                    --------->ANAC58           <---------ARR14(2)                                                    --------->ANAC46         --------->LBD16                                                         --------->ANAC58        --------->ANAC46                                                    ----------->HVH21       <---------LBD16                      ------>ZmHOX2a(1)             --------->ANAC55(2)      --------->MYB52(1)           --------->YAB1                      <---------ZAT18    -------->P     <---------ALFIN1           --------->YAB1        --------->At4g35610 <---------ANAC55(2)    ------>ZmHOX2a(1)  <---------ANAC58    --------------->AGL15  ------>ZmHOX2a(1)      ----------->RAV1(1)    ----------->HVH21  <---------ANAC58   <-----------------AGL1 --------->TOE2(3)     --------->MYB46(3)   cctctcctcaccggaaccactgatagcttagcaagaataatagctcctctaatggcagtagcaacttccttagaacacttgacacccaaaccaacatgac  21774500                                               --------->ZAT2                                               <---------ZAT2                                               --------->At4g35610                                         --------->WRKY38(1)                   ---------->DOF2       --------->WRKY45                                  <---------                ----------->RAV1(1)      --------->WRKY12                      --------->YAB1            --------->MYB46(3)           ----------->HVH21                  ------>ZmHOX2a(2)           ------>MYB46(1)             <----------DOF2                      =========================           ------>MYB83                ------>ZmHOX2a(1)--------->MYB52(2)--------->ARR11(3)      ---          ----------->RAV1(1) ------->TEIL<---------WRKY18(1)             <---------ARR11(3)      ---   catttccatcaccaacaacaacaaaggccttgaatctagtcctttgaccagctctggtttgtttctgaacaggcatgatcttcataacctcgtctttcaa  21774600                                                              --------->At4g35610                          <------MYB46(1)                   ------>ZmHOX2a(2)                          <------MYB83                     <------ZmHOX2a(2)             --------->MYB46(3)       -------->P------>ZmHOX2a(2)                         --------->CCA1(2)            <---------At4g35610       ------>MYB83      --------->MYB59                  <---------ARR14(2)           <xxxxxxxxxxxxx       ------>MYB46(1)   <---------------AtSPL8           --------->ARR14(2)           --------->ANAC46  ======================HOX2a_HOX2a                       --------->ARR11(3)   --------->AHL20(2)  <------ZmHOX2a(1)  --------->ATHB12                     --------->AGP1       --------->AHL20(1) -DOF2----------->RAV1(1)--------------->AtSPL8           <---------ARR11(3)   <---------AHL20(1) ========HOX2a_HOX2a<---------YAB1                        <---------AGP1       <---------AHL20(2) ------>TOE1(2)--------->ARR11(3)                       ----------->ARR10 <---------MYB52(1)        < ------>TOE2(2)<---------ARR11(3) <----------DOF2   <---------YAB1     <-------TEIL <-----------HVH21   cgtaggaccaacaagatgatctatgatttggtactcctttactgggagagaatgaagatagatctgctctagcttcgttattttattgtcagccactaga  21774700                                                            --------->ANAC58                                                   --------->ANAC58                                 -                                                   --------->TGA1a                                 --                                                   <---------O2                             <--------                                                   --------->O2                             ------>NtERF2                                                   --------->ANAC46                        <---------ALFIN1                                           --------->DEAR3(1)                              --------->RAP2.6(2)                                       <---------SPL7       --------->ANAC46           --------->ANAC58                                     --------->ANAC46       --------->ANAC58           --------->ANAC58         <-----------HVH21          --------->LBD16--------->bZIP60(2)                --------->ATERF1(1)        <------MYB46(1)        <---------ANAC58    --------->ANAC58                  <---------ALFIN1        <------MYB83           <---------ANAC58  <---------ALFIN1                    <---------ATERF1(1)       --------->MYB59      <---------MYB52(1)--------->RAP2.6(2)                  <-----------HVH21< xxxxxxxxsmallRNA(fl3)    <---------ANAC58--------->ANAC58 <---------LBD16    <------ZmHOX2a(2)  <--- -----------------AGL1    <---------ANAC58--------->ANAC58<---------ALFIN1   <-----------HVH21-------   cgacctagtttggtcactggaacccatttcgtttcttccgaggcacggcctccacgtcttccacggcctcttggaccacgatcacggccacggccacctc  21774800                                                      --------->RAP2.3(2)                                                      --------->RRTF1(3)                                                      --------->DEAR3(1)                                                     <------NtERF2                                                     --------->DEAR4(2)                                                     --------->ATERF1(1)                                                     --------->ORA47(2)                                                    <---------RAP2.3(1)                                                    <---------RRTF1(1)                                                    <---------ATERF1(1)                                            --------->ANAC58                  ------>NtERF2             <---------ALFIN1                 --------->ANAC58           --------->ANAC58         --------->DEAR3(1)                ------>NtERF2       ------>NtERF2                      <---------ALFIN1       --------->ABI4(1)                  --------->DEAR3(1)      --------->DREB2C(2)               ------>NtERF2--------->RAP2.3(1)      ------->GAMYB                     --------->ABI4(1)      --------->DEAR3(1)               --------->ANAC46     --------->DEAR3(2)                --------->DREB2C(2)     --------->MYB46(3)                --------->DEAR3(1)    <---------ATERF1(1)               --------->MYB46(3)   <---------ALFIN1                  <---------ATERF1(1) <---------DAG2 ------>PIF5<-----------ARR10<---------REM1(2)     <---------DEAR3(1)     --------->LBD16 ------->ANAC46  --------->ANAC46    <---------At5g28300 <----------DOF2  ------>NtERF2 -ATERF1(1) <---------ARR11(1)      <---------WRKY38(1)------>NtERF2     --------->ANAC46 -------PIF5--------->ARR14(2)      <---------WRKY12------>NtERF2    <----------DOF2 ------ALFIN1    --------->ANAC58 <-----------HVH21--------->ANAC46------>ZmHOX2a(1)             <--- -->AtMYB61 <---------ARR14(2)<---------ALFIN1  ---------->CDC5 ------>ZmHOX2a(1)             *TSS---   cacgtccaccgccgaatccacgcccgaagtcaccacggtcaccgccacgctctgcgccgctttctcctcctctttccgccattttcgatgaagtaaaccc  21774900                                                                           <---------PCF2                                                                          ----------->TCP11(1)      <-----------GT1                                                 --------->ALFIN1   --------->ARR14(2)                                                <----------DOF2   <---------ARR14(2)                                               <---------ANAC58     <---------AHL20(2) ------STY1(1)      --------->AHL20(2)    <---------TOE2(3)         <---------ANAC58     <---------YAB1 ------>MYB52(1)    <-----------TBP       <---------TOE1(3)   --------->ATHB12<------NtERF2<---------   tagcggattcacaagttttagtttatataggtgagcataagattagggttttcgaaagtctgaattatgggcttgtgggccgaatgttgatataattgtt  21775000                                                                <---------ANAC55(2)                                                                <---------ANAC58                                                                <---------ANAC58                                                           <---------------AtSPL8                                                           <---------------AtSPL3                                                     --------->MYB46(3)                        <-----                                                     <---------------AGL15      <---------ANAC58                                                     --------------->AGL15      <---------ANAC46  ---                                                     ================================================                        ------>NtERF2               --------->ANAC58            <---------ANAC58 <---                ---------->DOF2                     --------->ANAC58   --------->AtLEC2    <---------          --------->ANAC46     --------->AHL20(2)   ----------------->AGL2     --------->ATHB12<-----      --------->CCA1(2)<---------ATERF1(1)          --------->ANAC46 --------->CCA1(2)    <---------ANAC58 ---CBF<-------TEIL  <---------LBD16               ------->GAMYB--------->ANAC55(2)       <---------ANAC58   ttgttgagatacaaaccaagaagcccggcccaataacataacttattcaataacacccaatatagtacgtgatatgcaaattgagtggaattgctttgct  21775100                                                                           <---------AtLEC2                                                                           <---------ANAC58        ------>ZmHOX2a(2)                                                  <---------ANAC58      <---------ARR11(3)                                    <---------ANAC58 ----ANAC58                         <---------------AGL15   <---------ANAC58 ------>ARR11(3)       <---------ANAC58        <----------DOF2 <---------ZAT14 ===================================================MADS_MADS  <---------ZAT18    ----------->GT1 ------CCA1(2)         <---------ANAC58        <---------DAG2  --------->ZAT18  <---------ANAC58   -- -DOF2--------->ARR11(3)         <-----------GT1   --------->AtLEC2        <---------ANAC46 <-------- ----ANAC58           <-------TEIL  --------------->AGL15   <---------ANAC46    <---------ANAC58   --   tatcttgtgatcttaagaactatgtgcgtattgttttactatttagagactttatgcaaattgagtgcaattggtttgcttgtcttgtgaaacaaattct  21775200                                            ----------->GT1                   <---------AHL20(2)                                            ------>ZmHOX2a(2)                --------->AHL20(2)                                           <------ZmHOX2a(2)                 --------->ICU4                                          <---------ARR11(3)               --------->YAB1      <---------MYB46(3)                  --------->ARR11(3)      <-------GAMYB <---------ARR11(3)             --------->ZAT18                  --------->MYB55(2)                <- ------->ANAC58                 <---------ZAT18                  --------->MYB52(2)                -- -GLK1(2)                       --------->ZAT14                  <---------MYB46(3)             ----- ------->ANAC58    --------->AtLEC2   ---------->DOF2          <---------MYB52(1)   <-----------HVH21   caagacatttgttagacatttatgcaaaccattgtgaactcaaagatcgtaaacaaatgtaattcgtttgttgtcagtaataaataggtcatacatttta  21775300       <---------YAB1    ------->TEIL   <---------GLK1(2)                --------->HSFB2a(1)                           <----------DOF2 --------At4g35610                  <---------HSFB2a(1)<-----------HVH21      <---------ZAT18 ------->At4g35610                <---------GLK1(2)   <-----------RAV1(1)   --------->ANAC46 ----->DOF2       --------->At4g35610          <----------DOF2      <-----------------AGL1      <----   aagctgaatctcattgtatcatctctcaaatggctagaattttcttcggctttttagtgtcgcatcattctcttatttaggccactttccaattggttat  21775400  Previous    Next  AGI:  At1g58684.1    Description:  40S ribosomal protein S2, putative. Identical to 40S ribosomal protein S2-2 (RPS2B) [Arabidopsis Thaliana] (GB:Q93VB8;GB:Q8L861;GB:Q9SM06); similar to XW6, structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G58380.1); similar to 40S ribosomal protein S2, putative [Arabidopsis thaliana] (TAIR:AT1G58983.1); similar to 40S ribosomal protein S2 (RPS2B) [Arabidopsis thaliana] (TAIR:AT1G59359.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23572.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79008.1); contains InterPro domain Ribosomal protein S5, eukaryotic/archaeal; (InterPro:IPR005711); contains InterP Range:  from: 21773427    to: 21774894    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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