Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                <---------WRKY18(1)                             --------->WRKY38(1)                             --------->WRKY12                         <---------TOE2(3)                        <---------DOF5.7(2)                        XXXXXXXXXXXXXXXXXXXXXXX>MIR404                     <----------DOF2                    <---------ANAC46                  ------>ZmHOX2a(2)           ----------->HVH21 ----------->HVH21        ================HOX2a_HOX2a     <---------ZAT2        =================HOX2a_HOX2a    --------->At4g35610                                       ---        <------ZmHOX2a(1)<---------TOE1(3)                --------->YAB1<--------P   <----------DOF2    <---------MYB52(1)--------->DOF5.7(2)    <--------P--------->WOX13(1)    --------->At4g35610  --- <------NtERF2   <------ZmHOX2a(2)      <---------At4g35610           --------->ANAC46          -----   ggcagcgttaggagtgacgatcgcgttaacgatgaccgtttcagcaggtagaggtgtctatcaacacaatacaggtaagagcagaggctttctctggcaa  21751900                                                                                              -------                                                                                              <------                                                                                            <--------                                                                                            <--------                      --------->MYB52(1)                                                 ------->GAMYB                   <---------At4g35610                              --------->ANAC58  --------->MYB52(1)                 <---------ANAC46                                   ------>MYB83   --------->ANAC58            <---------ANAC58      ----------->GT1                   ------>MYB46(1)--------->ANAC58            <---------ANAC58  ---------->DOF2                       --------->ANAC58 <---------WRKY38(1) ------>ANAC58   <---------RAP2.6(2)                     --------->ANAC58        --------->At4g35610 ------>ANAC58  --------->RAP2.6(3) <------ZmHOX2a(1)    --------->ANAC58     --------->At4g35610 ---->MYB52(1) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <------NtERF2      ---------->DOF2<----------   acgacaatacgttgtcgtttcggctaatggagcaaagaggaaaatgaaacagatgggcctcgcacaaaccaagcccaagaagcagaggcaacggtcatct  21752000                              --------->ANAC58                              --------->ANAC58                              --------->ANAC55(2)                           ------>ZmHOX2a(1)                          --------->TOE2(3)                     <---------HSFC1(2)                     --------->HSFB2a(1)                     --------->HSFC1(2)                     <---------HSFB2a(1)                    <-----------ARR10           <---------ZAT2                 --------->ANAC46   --------->ANAC58 --------->GLK1(2)           <---------At4g35610            --------->ANAC58   --------->ANAC58 --------->ARR11(3)          --------->At4g35610 ------->GAMYB -->At4g35610       <---------ARR14(2)          --------->ZAT2     --------->MYB46(3) ---At4g35610       --------->ARR14(2)      --------->ALFIN1<------ZmHOX2a(1)  --------->ANAC58------ -WRKY38(1)        <---------GLK1(2)     --------->DAG2  --------->YAB1       --------->SPL7<-------- -WRKY12        <---------HSFB2a(2)     ---------->DOF2 --------->ICU4   <------------------SPL14  -- -HVH21         --------->HSFB2a(2) --------->YAB1  <------NtERF2--------->MYB52(1)---------->DOF2---   gtttcaagtaaacagagtctagaatcttcctcaagtaatgacaaaagtggagctggcaataaggagacaacgacctcttgtacggcaaagcagttcaacg  21752100         --------->GLK1(2)     <---------HSFB2a(2)                                                                       <-----     --------->HSFB2a(2)                                    >>>>>>>>>>>>>>>>>LFY              <------ --->ANAC46                                             --------->At4g35610                <---------ALFIN1 -WRKY12<---------GLK1(2)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           --------->At4g35610 ------->DAG2                   --------->At4g35610     <---------At4g35610      <---------At4g35610 ------->DOF2                   <---------At4g35610----------->HVH21          <xxxxxxxxxxxxxxxxxxxxxx   taaagctcgagaatcgtttctcaacccttgattcagaagactcaacttgatgtatgacatctgtccaatgtctctagggttttagctaagtctccacctt  21752200                                                 --------->YAB1                                                <---------ATHB12     --------->ANAC55(2)                    ------------>CBF   <------------CBF   <---------AHL20(2)                       <---------YAB1 ---------->DOF2 -----DOF2                         --------->ANAC58    --------->TOE1(3) ---DAG2--------->ARR14(2)         --------->ANAC58    --------->TOE2(3) ---------->ID1 xsmallRNA(i2)                 <----------DOF2--------->WOX13(1)<---------WOX13(1)       <---------At4g35610   tgtatttaagtattctcaaactcaagttgtaagctttaagcaaactatcaatgaaaacctaaaaagattgattttgtcttcatggtatcagagctcatgg  21752300              --------->ZAT6                                                              --------->GLK1(1)         --------->AtLEC2                                                                 <---------GLK1(1)         --------->ANAC46                                                             <---------HSFB2a(2)      <-------TEIL                                   <---------At5g28300              --------->HSFB2a(2)     <------ZmHOX2a(2)                             ----------->HVH21      --------->ARR11(3)    <---------ARR11(3)                  *TSS      <-----------HVH21   ---------->DOF2<---------LBD16    --------->ARR11(3)                <---------ARR11(3) <---------MYB52(1)         ------>ZmHOX2a(1)    --------->AGP1                    --------->ARR11(3)--------->At5g28300    --------->REM1(1)   agaatagatccatggaactctactcactcccttctctaaacatctcaaattgtgtcaccgttactctcacttcaaagaactacatcctctggaaatctca  21752400                                                                                           --------->HSFC1(2)                                                                                           --------->HSFB2a(1)                                                                                           <---------MYB46(3)                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                         ------>NtERF2 <----                ------>NtERF2                                                    --------->ANAC46               <---------RAP2.6(2)                                               ----------->HVH21              --------->RAP2.6(3)                                                <---------ETT(1)            ----------->HVH21          --------->ATHB12<---------ZAT2        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <---------ANAC58            <---------YAB1   --------->ZAT2     <---------AtMYB61<---------HSFC1(2)          <---------ANAC58<----------DOF2       <---------ALFIN1        --------->ALFIN1  <---------TOE1(2)   gtttgaatcgtttcttgacggccaagggcttctagggtttgtcattggctccatccctgctccgaacacaacaagtgtggtctccgacatcgatggttct  21752500                                                                                                    <                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                  ---                                                                  <---------ANAC58                <--                                                            ------>ZmHOX2a(1)                    ----                                                     <---------ZAT18      <----------DOF2       <----                                                     --------->ZAT14 <------MYB46(1)            <----                                                     <---------ZAT14 <------MYB83             -------                                                  <---------ANAC46<---------ANAC58            <------                                                --------->ZAT14   <---------ANAC46     <----------DOF2   ------>ZmHOX2a(1)           ----------->GT1  --------->REM1(2)<---------ZAT2  <---------At4g35610- -------GT1        --------->YAB1               <---------ZAT14  --------->ZAT2  --------->At4g35610-   acctcctcttctccaaaccaagaatacttcacatggttcaaaacagacagtgtagtgaagtcctggctgcttggttctttctcagaagactttctcagcg  21752600         --------->At5g28300        ----------->GT1    --------->ETT(2)    <---------ETT(2)    --------->WRKY12    --------->WRKY38(1)   --------->ATERF1(1)   <------NtERF2  <---------ATERF1(1)  <-----------HVH21  ------>NtERF2 --------->DEAR3(1) ------NtERF2 --------ATERF1(1)                                           ------>ZmHOX2a(2) ---->NtERF2                                                 ==============HOX2a_HOX2a --------RAP2.3(1)                                          <------ZmHOX2a(2) ------>DEAR3(1)                                            ===============HOX2a_HOX2a -------DEAR3(1)                                            --------->GLK1(1)               <-------- ----->ATERF1(1)                                            <---------GLK1(1)               <-------- -----ATERF1(1)                                      --------->YAB1 ------>ZmHOX2a(1)       --------- -------HVH21                             <---------ANAC58 <---------AGP1                   --------- -->At4g35610                             <---------ANAC58 <---------ARR11(3)     --------->At4g35610 ---At4g35610                         <-------GAMYB--------->At5g28300     <---------MYB46(3) -------->RAP2.3(1)                  <-----------RAV1(1)   --------->ARR11(3)     <---------At4g35610 -------->ATERF1(1)        --------->ALFIN1       ----------->GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   tcgccgtcgactgtaaaacgtctcatgaggtatggctctctgttgctagacactgtaataagatctcttcctctaggttgtttgagcttcagagacgtct  21752700                                              ------>ZmHOX2a(2)                                             <------ZmHOX2a(2)                                             --------->GLK1(1)                                            <---------AGP1                                            --------->ARR11(3)                                            <---------ARR11(3)                           ----------->HVH21                                            <---------ARR14(2)                         <---------HSFB2a(2)                                            --------->ARR14(2)                         --------->ANAC55(2)                                           <------ZmHOX2a(1)                           --------->HSFB2a(2)                                         <---------TOE1(3)                             <---------ANAC55(2)                                     --------->TOE2(3)                              <---------ARR14(2)                                     --------->YAB1    <---------ARR14(2)       ===================== <---------GLK1(2)xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ARR14(2)       <------ZmHOX2a(1) -O2            ====================================HOX2a_HOX2a                 ===================== -TGA1a         <------ZmHOX2a(1) <---------CCA1(2)    --------->GLK1(2)    --------->LBD16 >TGA1a         =====================================HOX2a_HOX2a        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) >O2   ----------->GT1       ------->TEIL<---------TOE2(3)      --------->MYB46(3)  --------->ARR14(2)   tcagaatattagtaaaaaggataagtctatggatgtctatcttaaggatctcaaacaaatctgtgaacaactagcatccgtaggaagttctgtaacagag  21752800  Previous    Next  AGI:  At1g58602.1    Description:  disease resistance protein (CC-NBS-LRR class), putative. Identical to Probable disease resistance protein At1g58602 [Arabidopsis Thaliana] (GB:Q8W3K0;GB:Q94A96); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G59218.1); similar to ATP binding / protein binding [Arabidopsis thaliana] (TAIR:AT1G58848.2); similar to ATP binding / protein binding [Arabidopsis thaliana] (TAIR:AT1G58848.1); similar to LOV1-like protein [Olimarabidopsis cabulica] (GB:ABW24171.1); similar to LOV1-like protein [Olimarabidopsis pumila] (GB:ABW24172.1); contains InterPro domain Disease resistance protein; (InterPro:IPR Range:  from: 21750038    to: 21768634    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g58561.1    Description:  transposable element gene. copia-like retrotransposon family, has a 3.8e-219 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays) Range:  from: 21752340    to: 21756911    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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