Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         ----------->GT1                 --------------->AtSPL8                                      <-     --------->GLK1(2)                 <---------ICU4                                     --------->LBD16 ------->YAB1               ---------->DOF2                       <---------ATHB12    <---------ARR14(2) ->ANAC46           <----------DOF2   --------->ICU4        --------->REM1(1)         --------->ARR14(2)   atcagagaatcgaaacaattcgctttgacaaaaagaaacaattagtactacataacaatgcttcatcactcattctctaaaattttcaaatccagaatca  21720600                                                                  <----------DOF2                                            <---------ATHB12     --------->AtMYB61             ------                           --------->ARR14(2)                  ------>MYB46(1)                 ------                    ------>MYB46(1)     --------->YAB1         ------>MYB83                    ------                    ------>MYB83  --------->ANAC58          --------->MYB46(3)             --------->ARR14(2)                  <---------MYB111(1)  <---------ATHB12     --------->DEAR3(2)             <---------ARR14(2)                  <---------MYB59 --------->ANAC58 --------->CCA1(2)                   --------->At4g35610                  <---------MYB46(2) --------->WOX13(1)   <---------ARR14(2)    --------->ANAC58    <            --------->YAB1 <---------ARR14(2) ---------->DOF2--------->DEAR3(1) --------->ANAC58    - --------ATHB12<---------ALFIN1   --------->ANAC46<----------ID1 <---------DAG2 --------->ANAC46  ---   aatcaacaaaactatcaccacctaattcgaatccataagcaatcaaatcaaagagacgagaaaccgacctttccaagagtataagcaagagcagaaccag  21720700                                                                      --------->MYB52(1)                                                                     ----------->TGA1                                                                     --------->ALFIN1                                                                   --------->At4g35610                                                                   <---------At4g35610                                                                  <---------DEAR3(1)                                                               <---------DEAR3(1)                                                             <-----------HVH21                                                            <---------O2                                                            --------->O2                                   <---------GLK1(1)        <---------TGA1a                                  --------->ARR14(2)        --------->TGA1a          ----------->RAV1(1)     <---------ARR14(2)     ----------->HVH21     --------->At4g35610    ----------->RAV1(1)         ------>ZmHOX2a(2)     <---------ZAT2        ----------->HVH21     <-----------GT1 <------NtERF2     --------->ZAT2  --------->bZIP60(1) <---------MYB52(1) <---------bZIP60(1)     <---------At4g35610  --------->At4g35610 --------->YAB1--------->bZIP60(1)                   <-- --->ANAC58          <---------TGA2(1)  --------->LBD16 --------->DEAR3(2)                      ----- --->ANAC46  ----------->RAV1(1)  <---------ARR11(3)   <------ZmHOX2a(2)                       ------ --->ANAC58 --------->MYB46(3)    --------->ARR11(3)  --------->AGP1 ----------->HVH21         ------ ---------ALFIN1--------->YAB1    <-----------ARR10   --------->ARR14(2)                     ------>ZmHOX2a(2) -------->REM1(1)    --------->TGA2(1)<---------LBD16 <---------ARR14(2)                    <------ZmHOX2a(2) -------->RAV1(1)    <---------bZIP60(1)----------->GT1--------->CCA1(2)  --------->At5g28300--------   caacaccagctccaacaacaatgacatcagcgacagtatctccggtaatattaacagatccgacgtcggaggtgacggtagaaacagttttccgatcgtg  21720800                                                                                   <------ZmHOX2a(2)                                                                                   --------->CCA1(2)                                                                                  --------->ARR11(3)                                                                                  --------->ARR14(2)        --------->SPL7                                                            <---------ARR11(3)       <---------ARR14(2)                                                         <---------ARR14(2)       <---------MYB52(1)                                                         --------->AGP1      <---------SPL7                                                            ----------->ARR10<---     <---------HSFB2a(1)     --------->GLK1(2)                      <------ZmHOX2a(2)         -------     --------->HSFB2a(1)   --------->HSFB2a(1)           ==================HOX2a_HOX2a        <------ -------ANAC46        <---------TOE2(3)            --------->At4g35610 ---------->DOF2       <------- ---->MYB52(1)        <---------------------WRI1 ==========================HOX2a_HOX2a       -------- ----->TGA1<---------At4g35610           <----------ID1  <------ZmHOX2a(1)  ----------->GT1  <------- ----->HVH21        ----------->HVH21---------->DOF2     =================================HOX2a_HOX2a ->YAB1--------->ARR14(2)  --------->HSFC1(2)    <------ZmHOX2a(1) <---------ARR11(3)      --------->TOE2(3)   acggagaccgttccgcttcggtttgacgaagaatccatagaaagcgacgaaggagatgaggagagaagagatcaaaagaggtaagatccaattccataat  21720900                                            <---------LBD16                                       <----------DOF2                                      <---------ANAC58                                <---------AHL20(2)                              <---------RVE1(1)                                                  <--- ------ICU4                   <---------CCA1(1)           ---------->DOF2                        <--- -->ATHB51                   --------->ARR11(3)     --------->MYB52(1)                       <------- ---ICU4                     <---------ARR11(3) <---------ARR14(2)                         <---------YAB1 --YAB1                      <---------GLK1(2)----------->GT1                           --------->GLK1(2) ->ICU4            <----------DOF2    <---------ANAC58 *TSS                         --------->AHL20(2) --ATHB51 <---------YAB1    <---------RVE1(1) --------->LBD16       ----------->GT1 <---------AHL20(2)   tgtgactccattatcgttctgcttttacagagatttttttgctttgtgcggaaacaacgagaaaggagagaagtatataagtgtatataaattctgtttg  21721000                                                                                               <-----                                                                        <-----------GT1        ------                   <---------AHL20(2)                                 <-----------HVH21        ------      <-----------GT1                                          <------NtERF2                   <-----   <---------AHL20(2)                                      --------->ZAT2                  ------>ZmHOX2a(1) ------ANAC58  <---------AHL20(2)                          <---------ZAT2                 --------->TOE2(3) ------ANAC58 <---------YAB1            <---------KAN4(2)  --------->At4g35610       <-------TEIL   < --MYB52(1)  <---------AHL20(2) <----------DOF2            <---------At4g35610       ------->TEIL   <   cttatttttttctatttttatttgattttttggacttttgggaatagtccaagttagtttaagctggcaatttgtcacggtcttatgtacatcctaaaat  21721100           --------->ARR11(3)      ----------->GT1      <------MYB46(1)      <------MYB83                                          --------->AHL20(1)    <--------P                                           --------->AHL20(2) ----ARR11(3)                                     ----------->GT1   <----------ID1 --->ARR11(3)                  ---------->DOF2    <---------ANAC46<-----------GT1 --->AHL20(1) --------->HSFB2a(2)          --------->MYB52(1)--------->AHL20(2) ----AHL20(1) <---------HSFB2a(2)     --------->AHL20(2) <---------AHL20(2)                        <- ---------ANAC58          <----------ID1 <---------MYB52(2) <---------AHL20(1)                   ---- ---------ANAC58        --------->MYB52(1) ---------->DOF2  <---------AHL20(2)               <-------   attcgtgttggtaaatctcgaagtagtaacgacaaaagaatcaaataacgcgaggtgaataaaatatttaacgacaaaattgacatattttggtgtttat  21721200     <---------ANAC58                                                                               <     <---------ANAC58                                                                               - --------YAB1           --------->ZAT14                                                             - ----->YAB1             <---------ZAT14 --------->ATHB12                ---------->DOF2             < --YAB1       --------->AHL20(2)       --------->ARR11(3)          ----------->GT1<---------YAB1    -   tgtaattgggtttgataaaaatagacttcagtgaaacagaagttattgggcctcttcttctcatatgaatagagaaaagcccttgtgaatgcttattcag  21721300  <-------TEIL <------ZmHOX2a(2) ---------ARR14(2) -------->AGP1 ------->TEIL -------->ARR14(2)                    --------->YAB1                                         -------- ---------ARR11(3)            <-----------GT1                   --------->MYB52(2)   <----------DOF2 -------->ARR11(3)         <---------ICU4            ------->TEIL                <-----------GT1   tagatccatatcaaatgaactcatactaattttgactatatcagaatagagtttgcatcttgctcttagttgcccttgtgaattttcctttgaatgtgta  21721400                                                                     ------->TEIL                                                         --------->AHL20(2)<--------P                                                         <---------AHL20(2)<---------WOX13(1)                                                     <---------AHL20(2)   <-------GAMYB       ----------->GT1                               --------->AHL20(2)  <------MYB83 --->GT1         ---------->DOF2                    --------->AHL20(2)   <------MYB46(1)            <   atttctgtctagtaaaatgcaaagctatggaaatagttttcttatgtctctaaatttaaaaaaattccatgtatttggttgatagcttaatgaaatttga  21721500  Previous    Next  AGI:  At1g58440.1    Description:  XF1 (SQUALENE EPOXIDASE 1); oxidoreductase. similar to SQE3 (SQUALENE EPOXIDASE 3), oxidoreductase [Arabidopsis thaliana] (TAIR:AT4G37760.1); similar to SQE2 (SQUALENE EPOXIDASE 2), oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G22830.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61516.1); similar to squalene monooxygenase [Datura innoxia] (GB:AAY22200.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49806.1); contains InterPro domain Aromatic-ring hydroxylase; (InterPro:IPR003042); contains InterPro domain Squalene epoxidase (InterPro:IPR013698); contains InterPro domain FAD dependent oxidoreductase; (InterPro Range:  from: 21717507    to: 21720955    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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