Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  <---------AHL20(2)                                                                           <---------AHL20(2)                                                                        <---------AHL20(2) <---------ICU4                                                       <---------YAB1 --------->YAB1                                                 --------->AHL20(1) -------->ATHB1                                    <---------CCA1(2)<---------ICU4 <--------HAHB4                                  <---------CCA1(2)  --------->YAB1 --------->ATHB12                  --------->TOE2(3)            <---------AHL20(1)                 <x -------->ICU4               xxxxxxxxxxxxxxxx>smallRNA(i)       --------->AHL20(2)                xxx ---------ATHB12           xxxxxxxxxxxxxxxx>smallRNA(i)         <---------AHL20(2)           -------- ------>WOX13(1)       ---------->DOF2           ------>ZmHOX2a(1) <---------YAB1 <---------AHL20(2)x   caatcattactctaaaatttctctgcaaagaaactattctcaatctctctcctatctctcttctattttattattattttatattttttagttaatgaga  21644400                                <---------At4g35610                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxx>smallRNA(s)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)         xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                              <---------MYB46(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                --------->ARR11(3)        --------->AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               <---------ARR11(3)        <---------AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------AHL20(2) xxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <----------DOF2 xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------AHL20(2)      -- ->YAB1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   --------->WRKY18(1)   ------>ZmHOX2a(1)            <- xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------AHL20(2)      <<<   aactatgtgagagactactgatggagatggttttagatgataagtagatggtcaagataatacatcccagtccttttttatttatttgttgaagtaattt  21644500                                                                                        <-----------GT1                                                                                 --------->TOE2(3)                                                                                ----------->GT1                                                                                <---------ANAC58         --------->YAB1                                                         <---------ANAC58    <---------AHL20(2)                                    --------->ANAC58      <---------ANAC46 ------->ARR11(3)             --------->ANAC46          <---------bZIP60(2)     <---------ANAC55(1) --------ARR11(3)            --------->YAB1          ----------->HVH21          <---------ANAC55(2) <<<<<<RAP2.2     <---------AtLEC2         <-----------GT1--------->ANAC58      --------->ANAC55(2)   agatattcaattgataatttggatgtctctataagaaacaaaaatttacctagaaatgacatgccctaaaatgtttcaaattacgtaaattatctgtatg  21644600                                                                     <-----------GT1                                                                    <-----------GT1                                                               <---------YAB1              <-----------GT1                                 <---------AHL20(2)           --------------->AtSPL8                             --------->AHL20(2)      <---------TOE1(2)                                      --------->YAB1   ------>ZmHOX2a(2)                                      <---------------AGL15 <---------ICU4  <------ZmHOX2a(2)                --------->ARR14(2)     --------------->AGL15 <-----------GT1  --------------->AtSPL3<-----------GT1                  <---------YAB1     <---------YAB1 --------->ARR11(3)  <---------------AtSPL8   <---------At4g35610  <---------AHL20(2) <---------ARR11(3)  --------------->AtSPL8   --------->At4g35610  --------->AHL20(2) <---------MYB59   agagatcgtacattttgtactattttgtaccattctgaaaccgcttactgctcccatttactattaaaattaaacattctaattactacttaacttcacc  21644700                                                                       <---------ANAC46                                                                <---------AtLEC2                                                               <-------TEIL                                        --------->AHL20(2)   ------->MYC2                  <---------TOE2(3)     <---------AHL20(2)   <-------MYC3                  <---------TOE1(3)     ----------->TBP      <-------MYC2          <---------WOX13(1)                 <-----------GT1      ----------->TBP        ------->MYC3         <------------CBF            --------->ICU4       ---------->ID1           <---------ALFIN1       --------->ATHB12 <--          --------->YAB1     <----------DOF2  <---------ANAC55(2)------->TEIL   <-------TEIL   *TSS   aaaatcgacctataatttttaacgatgatgtctttgtcttatataaatacttaaacagacacacatgcatgtctcgtctatattcattgactcacttgga  21644800                                                                           --------->ANAC58                                                                           --------->ANAC46                                                                      ----------->HVH21                                                                      <------NtERF2                                                                     <---------RAP2.6(3)                                                                     ------>NtERF2                           --------->ZAT2                            <-----------HVH21                           --------->At4g35610                      --------->RAP2.6(2)                           <---------ZAT2                           <---------ATERF1(2)                   --------->YAB1                                   --------->ATERF1(2)                  <---------ATHB12           <---------ZAT2         <---------bZIP60(1)                --------->WOX13(1)           <---------At4g35610    --------->bZIP60(1)            --------->AtLEC2              <---------ANAC58         <-----------------AGL1--------->MYB46(3)            --------->ANAC58              <---------ANAC58        ------>NtERF2          <---------MYB111(2)            --------->ANAC58         <----------DOF2    --------->ATHB12   --------->ANAC58 ---------------AGL3       <---------At4g35610         <---------ATHB12  <-----------RAV1(2)      <--   actatatatgagtcatgccaatcactagcagctctgaaacttttgcgagcttcttcaatgactggctctgccgtcacaggcaattcgtccaacaacttgc  21644900                                                                                                 <---                                                                                                 ----                                                                                            <--------                 --------->MYB46(3)       --------->GLK1(2)   <----------DOF2               ---------                -------->P               <---------GLK1(2)<----------DOF2         --------------->AGL15 -------ALFIN1--------->MYB46(3)      >>>>>>>>>TBF1    <-----------GT1           --------->TOE1(2)   acaccttgctgatgaaacaaccattgtaactccaatagaagaagaatctcttgtgagtaactttctttctcactatctccaatactacgaagagaaatca  21645000               <---------At4g35610               <---------DEAR3(2)               <---------ATERF1(1)               --------->At4g35610              <---------MYB46(3)              <---------DEAR3(1)                                                      <---------TOE2(2)             <---------ORA47(1)                                                       <---------TOE1(2)             <---------ANAC46                                                      ------>ZmHOX2a(2)        <---------ANAC58                                                         --------->ARR14(2)        <---------ANAC58                                                         <---------ARR14(2)     <-----------HVH21                                 <---------At4g35610    --------->HSFB2a(2) ------At4g35610 ----------->HVH21                     <---------ZAT2        <---------LBD16 ----->At4g35610 ----------->TGA1                      --------->At4g35610  ------>ZmHOX2a(1) <------ -GLK1(1) ----------->HVH21                            --------->ZAT2       ----------->RAV1(2) >GLK1(1)--------->LBD16     <---------YAB1--------->ANAC46                 ==============HOX2a_HOX2a   gttgccatgtccgtggccggtgacgatatatatgatttcttctctccaccatggctcagctcatacgagaaactcatcctctggatcggaggttttaaac  21645100                                                    ------>MYB83                                              --------->MYB46(3)                                            --------->ANAC46                                            --------->ANAC58                                            --------->ANAC58                                          <---------ANAC58   -------->P                                          <---------ANAC58   ------>MYB83                              <---------MYB52(1)------>NtERF2------>MYB46(1)    ----------->GT1   <---------ALFIN1<---------DAG2------>MYB46(1)   <---------AtMYB61 --------->MYB46(3)<---------SPL7      --------->AtMYB61           --------->MYB52(1) -----GT1    <---------At4g35610   <-----------GT1<---------MYB111(1)       <-------GAMYB   caggtatggtttttaagctcataaccacttctgttaatgaccttacgagccaccaaatagaccaactcgagagcattcggttagagactaaacggaggga  21645200                                            <---------TCP20                                            --------->ARR14(2)                            --------->REM1(1)                          <---------HSFB2a(2)  <---------ALFIN1                 <-------TEIL----------->RAV1(1)              <---------HSFB2a(1)           <---------ARR14(2)              <---------HSFC1(2)           --------->GLK1(1)              --------->HSFB2a(1)     --------->ALFIN1                                  <---------ANAC58              --------->HSFC1(2)    <---------ANAC58                                    <---------ANAC58             ----------->ARR10      <---------ANAC58     <---------MYB46(3)      <---------ZAT14             <---------TOE1(3)      <---------ANAC46 <---------YAB1             --------->ALFIN1             <---------TOE1(2)  ------->GAMYB ------>ZmHOX2a(2)                 <---------ZAT6    <--   --------->CCA1(2)      --------->HSFB2a(2)<------ZmHOX2a(2)         <-------TEIL  <---------TOE2(3)   gagagatttgatgcgaaggttcgcgcttctacaacagagcgtgggggatccacttctgatggttccatttaggcgcatcggagtgttgaggcttggcgaa  21645300  Previous    Next  AGI:  At1g58330.1    Description:  ZW2. similar to transcription factor-related [Arabidopsis thaliana] (TAIR:AT1G09950.1); similar to predicted protein [Gossypium hirsutum] (GB:AAT64037.1) Range:  from: 21644795    to: 21645706    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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