Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                --------->AHL20(2)            <-----------RAV1(1)    ----------->GT1                                               <---     <------ZmHOX2a(2)      ----------->GT1                                                 ---------    <---------ARR14(2)     --------->DAG2                                              <------ZmHOX2a(1)    --------->ARR14(2)    ---------->DOF2                                              ============== ------>ZmHOX2a(2)   <---------------AGL15                                           <---------TOE2(3) ------ZmHOX2a(2)    --------------->AGL15                       <---------YAB1      <---------TOE1(3) ------->ARR14(2)  --------->At4g35610                         --------->YAB1<---------ANAC55(2)----- --------ARR14(2)  <---------At4g35610                    --------->AHL20(2) --------->ANAC55(2)<----   cgatccgatccaatttgttgcagcttcaaaaagtaaatggaaatttttgaatagtttgaataaaatcatatttgaagttatgtgattaaggaaataaaga  21543200     <---------ANAC58     <---------ANAC46     <---------ANAC55(2)     <---------ANAC58     --------->ANAC55(2)    <-------TEIL            <---------ATHB12                                            ----------->RAV1(1)   --------->ALFIN1         --------->MYB46(3)                                       --------->ANAC46 ---ZmHOX2a(2)             -------->P                                       ========================RAV ->DOF2                --------->ANAC58      <---------REM1(1)              ----------->RAV1(2) ===HOX2a_HOX2a        --------->ANAC46      <-----------RAV1(1)          <---------ALFIN1   -------- ---->ARR11(3)         --------->ANAC58     <---------TOE2(3)       <---------ARR11(3) <----------ID1 -----ARR11(3) <----------DOF2    <---------YAB1             <----------ID1 <---------At4g35610   tcaaggtgcgtgacttactttgtgtaagcaaccattttgatgaactgatgttgcagagactagacgacgagctcttccacctgatcaaggcaacaaaacg  21543300                                     <---------GLK1(2)                                     --------->ARR11(3)                     <---------ZAT2  <---------ARR14(2)                     ----------->RAV1(2)                                --------->ICU4      <xxxxxxxx                     --------->ZAT2----------->ARR10               --------->ANAC58        <---------                     --------->At4g35610     ------>ZmHOX2a(2)     --------->ANAC46     <----------DOF2 <---------ANAC46    <---------At4g35610   --------->ARR11(3)      --------->ANAC58   xxxxxxxxxxxxxxx ->MYB52(1)        <-----------RAV1(2)     <---------ARR11(3)<---------ZAT6     <------ZmHOX2a(1)   atgtcgtttagggaaatagtttcagctgaactgtgatcagattttgatcttaagactcacctagtgtaaacgccatttttgaggagaagtcttttttttt  21543400                                                                   <---------ANAC58                                                                   <---------ANAC58                                                                   <-------GAMYB             --------                                                                  <---------MYB46(3)         <-------                                                                  <------MYB83     <---------------AGL15                                                   <---------ARR11(3)              --------------->AGL15                                            <---------YAB1        <------MYB46(1) <-----------------AGL3          <----------DOF2           ------>ZmHOX2a(2)            --------->MYB59  =================== xxxxxxxxxxxxsmallRNA(le3)        --------->ARR11(3)  <----------DOF2        <---------AHL20(2)------ ---------------ANAC81        <----------DOF2      --------->ARR11(3)  <---------ANAC46--------->YAB1 x>smallRNA(i)             --------->ARR11(3)--------->YAB1      <---------AtMYB61----------------->AGL3   ttttttttttttctttcagtttttgctcaggtctttgatctctactattatagtatcttttagatgtttggttgtgtattattttctattaatagtgcaa  21543500      ------>ZmHOX2a(1)--------->AHL20(2)     --------------->AGL15    <-----------------AGL1    <-----------------AG    ----------->GT1 ->ZAT18               <---------AHL20(2)                    --------->MYB52(1)  ---------->DOF2 --ZAT14            --------->YAB1                         <---------MYB52(2)   --------->AHL20(2) ====================MADS_MADS                        >>>>>>>>>TBF1            *TSS ---->DOF2       ----------->GT1               ---------->DOF2        ------->TEIL                 --   agtgattcctcatttggattagtaataaaacagtttaaactcaattttgtaaagaagaagaactaacacatgaattttgcaataaaagagaatgagttgg  21543600                                                           --------->ANAC58                    ------                            --------->ANAC58         <-----------HVH21                        <------                            --------->ANAC46     <---------ANAC58              --------->AHL20(2)                            --------->ANAC55(2)  <---------AtLEC2--------->ARR14(2)          ------>MYB46(1)                            --------->ANAC58 <----------DOF2    <---------CCA1(2)            ------>MYB83                            <---------ANAC55(2)  <---------ANAC58<---------ARR14(2)        --------->MYB46(3)                      --------->DAG2   <---------ANAC55(2) --------->ANAC46    <---------AHL20(1)                     ---------->DOF2   --------->ANAC55(2) --------->ANAC58    --------->AHL20(1) <-- -------->DOF2   >>>>>>>>>TBF1        <-------TEIL  --------->bZIP60(2)   ------------>CBF --------->AtMYB61   caaaagcttatctagagaagaagaaaagttacgcaagtgatacgtctctttgcctggtcacaagtcatatccacttgtcaatataatccagcaccaatcg  21543700                     <---------YAB1                    <---------AHL20(1)                    <---------AHL20(2)                  <---------YAB1                  <---------AHL20(2)              --------->YAB1                                                              -----------             <---------YAB1                                 ----------->RAV1(1)          ----------->GT1           --------->YAB1                           --------->CCA1(2)                  ---------->DOF2 --->YAB1 ----------->GT1                          <---------ARR11(3)              --------->At5g28300 ---ATHB12<---------YAB1        ------>ZmHOX2a(2)  --------->ARR11(3)             ----------->GT1 -------MYB46(3) <---------AHL20(1)            ---------->DOF2    <------ZmHOX2a(2)<-------GAMYB   ttgttgaagaaaatgataatattattttttgtgatccattaagaagaccgaaagatataatcccacagatcaaacatttttagacggttaaaagttaaaa  21543800                                                                                              -------                                                                                        <---------AHL20(2)                                                                                        --------->AHL20(2)                                                                                       <---------AHL20(2)                                                                                       --------->AHL20(2)                                       <---------YAB1                              --------->AHL20(1)                                  <------MYB83                                     --------->AHL20(2)                                  ----------->GT1                    <------ZmHOX2a(2) <---------AHL20(1)                                  <------MYB46(1)        --------->MYB46(2)        <---------AHL20(2)              ---------->DOF2    --------->MYB59         <---------MYB46(3)       <---------AHL20(2)           --------->YAB1  --------------->AGL15         --------->MYB52(2)    --------->AHL20(2)        --------->ATHB51   <---------------AGL15       <---------MYB52(1)      <---------AHL20(2)        --------->YAB1    <-----------------AGL3      --------->TOE2(3)   <----------DOF2     <------       <---------YAB1     <-----------------AGL1    ------->TEIL   --------->YAB1 --------->AHL20(2)- >GT1  --------->ICU4     <-----------------AG  <---------------AtSPL3   --------->TOE2(3) <---------AHL20(2)   catttggctataattgtaaagcccaatctctcaatttggttactattggacttgtacgttagttaacaaggatcacctttataaattaattaatttatag  21543900              --------->AHL20(2)                                                     <---------AHL20(2)        <---------ANAC46                                                            --------->AHL20(2)        ----------->GT1                                                             <---------AHL20(2)   <---------ICU4                                                                   <---------AHL20(1)   --------->ATHB51                                                           <-----------GT1   -------->HAHB4                                                         <---------AHL20(1)        <   <--------ATHB1                                                         --------->AHL20(2)       --  --------->ICU4                                                          <---------AHL20(2)   ------  <---------YAB1                                                          <---------ARR11(3)   <-----  --------->AHL20(2)                                                      --------->ARR11(3)   ------  <---------ATHB51                                                   --------->AHL20(2)        <-----  <---------AHL20(2)                                  --------->ANAC58    --------->AHL20(1)   ------ -->HSFB2a(2) <---------AHL20(2)               --------------->AGL15--------->AHL20(2)        ------- ---HSFB2a(2) <---------AHL20(1)               <---------------AGL15<---------AHL20(2)       -------- -------->YAB1--------->AHL20(1)  --------->AHL20(2)  --------->ANAC58   --------->AHL20(2) <<<<<<<<<RAP2.2   aaaaataattgtgtaaaatattagaactaaattcaaataaaaacaaatacaaatttaagcaaaacaatatttaaaatatatttcaattttttttagatat  21544000                                        <---------AHL20(2)                                    --------->YAB1                                   --------->AHL20(2)                                   <---------AHL20(2)                                <---------AHL20(2)                                --------->AHL20(2)                               --------->AHL20(2)          --------->AHL20(2)   <---------AHL20(2)       <---------AHL20(2)   -------->ATHB1      --------->AHL20(1)    --------->YAB1      <---------AHL20(1)    <---------AHL20(2)                                     --------->AHL20(2)     <---------AHL20(2)     <---------ICU4                                         <---------AHL20(2)   <---------AHL20(2)       --------->ATHB51                                       xxxxxxxxxxxxxxxxxx   --------->AHL20(2)       <--------HAHB4      --------->AHL20(2)                <---------AHL20(2) ---------AHL20(2)          -------->HAHB4      <---------AHL20(2)                --------->AHL20(2) ------->AHL20(2)          --------->ICU4  <---------YAB1                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --->ARR11(3)              <---------YAB1  <---------AHL20(2)         --------->AHL20(1) ----ARR11(3)              <---------ATHB51--------->AHL20(2)         <---------AHL20(1)  xxxxxxxxxxx --->AHL20(2)            --------->YAB1--------->YAB1    <---------AHL20(2)  --------->TOE2(3) ----AHL20(1)           <---------AHL20(2)--------->YAB1<---------AHL20(1) <---------ARR11(3) --->AHL20(1)           <---------YAB1<---------YAB1 --------->YAB1<---------AHL20(2)   <-----------GT1 -->CCA1(2)             --------->AHL20(2)--------->TOE2(3)        --------->AHL20(2) <---------AHL20(2) ->ARR11(3)<---------AHL20(2) <---------YAB1 --------->YAB1  --------->YAB1--------->ARR11(3)   attatatatatatttaatacacttatataattattaatttataatattaataaaatcatatatttataaaaaaatattatcttattaatttatcgatttg  21544100  Previous    Next  AGI:  At1g58180.1    Description:  carbonic anhydrase family protein / carbonate dehydratase family protein. similar to carbonic anhydrase family protein / carbonate dehydratase family protein [Arabidopsis thaliana] (TAIR:AT4G33580.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61613.1); contains InterPro domain Carbonic anhydrase, prokaryotic-like, conserved site; (InterPro:IPR015892); contains InterPro domain Carbonic anhydrase; (InterPro:IPR001765) Range:  from: 21541600    to: 21543579    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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