Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            ----------->HVH21                         --------->At5g28300                        ----------->GT1                       <---------DEAR3(1)                       <---------ANAC46                          --------->HSFC1(2)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       --------->HSFB2a(1)                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         <---------HSFB2a(1)                    ----------->TGA1                             <---------HSFC1(2)                    ----------->HVH21                          --------->ARR11(3)                    <---------ATHB12  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           <xxxxxxxxxxxxxx                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   --------->YAB1              <xxxxxxxxxxxxxxxxx               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   <---------ATHB12          <xxxxxxxxxxxxxxxxxxxx          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   <------ZmHOX2a(2)<----------DOF2  <xxxxxxxxxxxxxxxxx         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   --------->AGP1 <---------ARR11(3)<xxxxxxxxxxxxxxxxxxx      <----------DOF2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)------>ZmHOX2a(2)   <xxxxxxxxxxxxxxxxxxxxxx   --------->ARR11(3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------ARR11(3)  <---------GLK1(2)   <---------ARR11(3)--------->MYB52(1)<xxxxxxxxxxxxxxxxxxxsmallRNA(s2)   <---------YAB1<xxxxxxxxxxxx  <---------CCA1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->ARR11(3)<---------ATHB12   <-------   ttctaaatcttttgtttcttcaatgacggtgacaatatgctcaaattttagatccaatgatctaagaactttctccatgattctcacatcatctagcttc  21532600             ----------->GT1            <---------TOE2(3)       <----------DOF2    <---------ARR11(1)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   <---------MYB52(1)      <-----------HVH21                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxsmallRNA(se3)   ------->GAMYB                                --------->ATHB12 xxxxxxsmallRNA(fl3)     --------->MYB46(3)                         --------->TOE2(3)           <xxxx xxxsmallRNA(si3)       <---------At5g28300                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxsmallRNA(fl3)    <-----------GT1                            ------>MYB83                 ------ xxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           ------>MYB46(1)       <---------GLK1(2) xsmallRNA(si3)   <---------YAB1<---------ALFIN1              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxsmallRNA(se3)<------------AtMYB77                <-----------GT1     <xxxxxxxxxxxxxxxxxxx --GLK1(2)  <---------TOE1(3)<---------WRKY12            <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------   tctccgtttcttttaaggttattagtaaccgtcaacactcttgagaagtaatcggagacgagttcaccttccttcatttgtagtgcttcaaattctcctc  21532700                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                  xxxxxxxxxxxxxxxxx                        <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                        ------->TEIL                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                   --------->TGA1a                    xxxxxxxxxxxxxxxx>smallRNA(i)                               --------->O2                   <---------ANAC58                                            <---------O2                <----------DOF2                                                ====================MYC_MYB           --------->ANAC55(2)                                                 <---------TGA1a           <---------ANAC55(2)------>ZmHOX2a(2)                               <------NtERF2          --------------->AtSPL3                                      <----------DOF2  xxxxxxxxxxxxxx          <---------------AtSPL8                      --------->HSFC1(2)     ------>NtERF2 ------->GAMYB          <---------------AtSPL3                      <---------HSFC1(2)    --------->DEAR3(1)    <-- xxxxxxxxxxxxxxxxxxxsmallRNA(i2)  ------>NtERF2       --------->HSFB2a(1)   ----------->HVH21     <-- >ZmHOX2a(1)  ------->TEIL<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       ===================bZIP_DOF --- xxxsmallRNA(si3)  <---------ANAC58  <----------DOF2  <---------HSFB2a(1)  --------->DEAR3(2)     --- --GT1    --------------->AtSPL8 <---------ALFIN1<-------TEIL --------------------->WRI1  --------->MYB46(3)   ttagagtttgaagacgtactttcttgacttgatcggcacctttgtaagaggttcgaagcttctcccatgcttctttcgccgacgtagcttcaacgacctt  21532800             <---------At4g35610      --------->ARR14(2)      <---------ARR14(2)      <---------ARR11(1)      <-----------ARR10      ------->TEIL     <---------CCA1(2)     <---------ARR14(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------TOE1(2)                                       <---------ANAC58 xxxxx>smallRNA(se3)                                   <----------DOF2 xx>smallRNA(i)                                  ---------->ID1                                  <xxx -------HSFB2a(2)                                <---------CCA1(2)                          --------- -------HSFC1(1)                             <---------ANAC58                 <----------DOF2<xxxxxxx ------>HSFB2a(2)        <---------WOX13(1)  <---------ANAC58    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------>HSFC1(1)    --------->TOE2(3)     <----------DOF2 <---------ANAC58<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   ctcgaacgtatcttcatctaatccttgatagattagacagagagctttcttgtctctctttcttgagtctctcaaaccatctttttgagtttgagaaaga  21532900                                                            <---------TOE1(2)                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                    <-------MYC3                                                --------->TGA2(2)                                               <-----------HVH21                                               <-----------TGA1                                              <---------O2 --------->HSFB2a(2)                                              <---------TGA1a                                              --------->TGA1a                                              --------->ANAC55(2)                                              --------->ANAC55(1)                            <-------                                              <---------ANAC55(2)                          --------->YAB1                                              --------->ANAC46            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                          ==============================bZIP_DOF     xxxxxxxxxxxxxxxx>smallRNA(i)                      <-----------GT1         --------->ANAC58  <---------GLK1(1)         <---------YAB1            --------->LBD16                   --------->bZIP60(2)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          <---------LBD16 <----------DOF2     --------->ANAC58<------ZmHOX2a(1)         --------->YAB1 --------->TOE2(3) <---------ATHB12           --------->O2 ------>ZmHOX2a(1)            <---------ICU4 xxxxxxxxxxxxxxxxxsmallRNA(se3)             <---------ALFIN1<---------TOE2(2)          <---------ATHB12 ->DOF2  xxxxxxxxxxxxxxxx>smallRNA(i)     <---------ALFIN1--------->TOE1(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxsmallRNA(se3)--------->HSFB2a(2)   ------->MYC3--------->GLK1(1)      --------->ICU4   ctaccttcattctccggttcaatgaaacctttctcgactatctcccacacgtcatgtgctcctaggatagccttcattcgtagactccaattatcatagt  21533000                                                       ------>ZmHOX2a(2)                                                      <------ZmHOX2a(2)                                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                     <---------ARR14(3)                                                     --------->ARR11(3)                                                     <---------ARR11(3)                                                     --------->ARR14(2)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        --------->ANAC46                                        --------->ANAC58              --------->LBD16           --------->ANAC58            <---------LBD16            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         --------->ZAT18               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                        x         <---------At4g35610        <-----------GT1  <---------ARR14(2)                     <--------         --------->At4g35610     <---------ICU4     <------ZmHOX2a(1)             ----------->GT1   x         <---------ABI4(2)      --------->ICU4    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      ---------  <----------DOF2 <---------ANAC46 <---------YAB1*TSS--------->ARR14(3)           <---------ZAT6  <-- --YAB1  <---------ZAT14        <---------YAB1 <----------DOF2            <----------DOF2   <--------   tgctctttgtgagcaccgggacttggaagggaacattattactcgccatctttaggatcttcaagctctgataccactttgttagagtaaaattctttta  21533100            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         ---------->DOF2         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                        xxx     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                         <----------DOF2               <xxxx  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->MYB52(1)                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <------ZmHOX2a(1)  <----------DOF2                    <xxxx -------AGL15                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   xxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------TOE2(3) <-----------GT1     <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------>AGL15xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <----------DOF2    xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -------ZAT6xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------ICU4 --DOF2  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ANAC46   gaggtaatggagaaagtgtttaagtgttttgagagagttttttaggaaatagaacttttattactttgctttaaacttgaatacaacttcacaacattac  21533200                                                      --------->AHL20(2)                                                      <---------AHL20(1)                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                            xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                          xxxxxxxxxxxxxxxxxx>smallRNA(le3)                          xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  --------->AHL20(2)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------AHL20(2)                 ----------->GT1               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <xxxxxxxx               <------ZmHOX2a(1)               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        ------>ZmHOX2a(2)               <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->AHL20(1)                  <------ZmHOX2a(2)              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <---------AHL20(2)                    --------->CCA1(2)             --------->ALFIN1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       --------->ARR11(3)             xxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->ARR14(2)         xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <---------AHL20(1)                   <---------ARR11(3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) >>>>>>>>>RAP2.2  =================================HOX2a_HOX2a        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------ARR11(3) ------>ZmHOX2a(1)        <---------ARR14(2)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       --------->ARR11(3) ==================================HOX2a_HOX2a xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         --------->CCA1(1)   <---------------AGL15    --------->AGP1 xxxxxxxxxxxxxxxxxxxsmallRNA(si3)           --------->RVE1(1)  --------->TOE2(3)         <---------AGP1 xxxxxxxxxxxxxxxxxxsmallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->ARR11(3)     - xx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->AHL20(1)       <---------ARR11(3)    xx   aacatttgagaaggggaggaggtatttatagcctccaaactacaaaatatctaaaatattttaatcctaaatctagagagttcttatataagatctagat  21533300                                                                   --------->ATHB12                                                                  <---------YAB1                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                         xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        --------->ALFIN1                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       <------ZmHOX2a(1)                                                       <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                     <---------TOE2(3)                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                  --------->GLK1(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         <---                                  --------->ARR11(3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        xxxxx                     --------->KAN4(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxx                    <---------KAN4(1)   <---------ARR11(3) --------->ALFIN1            --------->GLK1(2)                    --------->KAN4(1)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <---------GLK1(2)                  <---------GLK1(2)     --------->ARR11(3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <-----            --------->ARR11(3)<---------TOE2(3)<---------YAB1   <---------At4g35610  xxxxxxxxxxxxxxxx         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->HSFC1(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------HSFC1(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------GLK1(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <----- xxxxxxxxxxxxxxxsmallRNA(l2) ---------->DOF2xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)    --------->HSFB2a(2) -------->TOE2(3) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <----------DOF2 xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <---------HSFB2a(2)   tacattattcaaattatctagattattctattaaagtatctagatttttatgtttaaggaggtggaagatgattgtagaaaatttctagaatcttttaag  21533400                                                          <---------AHL20(2)                                                          -------->ATHB1                                                          <---------ICU4                                                          --------->ATHB51                                                          -------->HAHB4                                                          --------->ATHB12    <--------ATHB1                                                         <---------YAB1       <--------HAHB4                                                         --------->ICU4       --------->ATHB51                                                      <---------AHL20(2)      <---------ICU4                                                      <---------AHL20(1)      --------->YAB1                                                      --------->AHL20(1)     <---------ATHB12                                                   <---------ICU4            --------->ICU4                                                   <--------HAHB4            <---------ATHB51                                                   --------->ATHB51          --------->AHL20(2)           --------->YAB1                         <---------YAB1   <------------CBF          <---------YAB1                          --------->ICU4  --------->ATHB12        --------->YAB1                          xxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->AHL20(2)       --------->ICU4                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---ZmHOX2a(1)      ---------->DOF2             xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(i2)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxx>smallRNA(si3)                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------AHL20(2) ----TOE2(3)--------->ARR11(3)         ----------->ARR10 <---------ATHB51------------>CBF xxxxxxx>smallRNA(i2)  XXXXXXXXXXXXXXXXXXXXXXX>MIR163 --------->AHL20(2) ------>ZmHOX2a(2) ----TOE1(3)<---------ARR11(3)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------WOX13(1)   gagatggaaatgatgatatttctaaagaaaactttagaacttagatttggccataattaattattggataattgatccaataattaaacttttgaatcaa  21533500  Previous    Next  AGI:  At1g58140.1    Description:  transposable element gene. copia-like retrotransposon family, has a 1.6e-253 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family) Range:  from: 21529087    to: 21533049    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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