Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               --------                                                                                 --------->AtLEC2                                                                                 --------->ANAC58                                                                                 --------->ANAC58                                                   --------->ZAT14               --------->ANAC46 ---              <---------ANAC58                ---------->DOF2           <------NtERF2       <--------              <---------ANAC58           <---------MYB52(1)           --------->ANAC58    --------->WOX13(1)              ----------->RAV1(2) --------->ANAC58 <---------ZAT14    --------->ANAC58--------->ANAC58    --------->TOE2(3)             --------->ANAC58 --------->ZAT18  <---------ANAC58  --------->ANAC58 >LBD16  <---------ICU4         ---------->DOF2--------->DAG2       <---------ANAC58---------->DOF2   gtattacatcaacattacctgtggaaggaaaacgagaagccccgttagaaaagttcactggcaattcatggctcggcaagttcaagcaaagccaatcaag  21491100                                                    --------->ANAC46                        ---------->DOF2             --------->ANAC58                      ------>ZmHOX2a(1)             --------->ANAC55(2)                           --- ->YAB1              --------->TOE1(3)              --------->ANAC58                             ---- ------>ZAT14        --------->TOE2(3)            <-----------GT1                        <------ZmHOX2a(1) -ATHB12         <---------ALFIN1         <----------DOF2                               <----------ID1   agcagtctcaagcgttgctccatccttaaaacagaacaaaaacactttgtatttacgaaatcgtctcagaaataaaaactgagaaatgtaaggacaaatg  21491200                                                                              --------->ATHB12                                                                             <---------YAB1                                                                             --------->ICU4                                                                    <---------HSFB2a(2)         <----                                                                 --------->GLK1(2)              -----  <-------GAMYB                                                 --------->ARR14(2)           <------- --------->AtMYB77                             <-----------GT1  <---------GLK1(2)        <----------DOF2 ------->HVH21   <------ZmHOX2a(1) <---------YAB1             ----------->ARR10       --------->GLK1(2)   tgacagttaccctaagagaggagagaacgagttcaatctgattatctaaaaacccttcgcaagagagattctcgtagagattattgagtttctttctctt  21491300                         --------->LBD16                       <---------LBD16--------->LBD16                    ----------->HVH21<---------DEAR3(1)                   <-----------HVH21--------->SPL7                 <------NtERF2      <---------LBD16                ------>NtERF2      --------->ATERF1(1)                                      ---------            <---------ANAC58       <------NtERF2                 <---------DOF5.7(2)      <---------AHL20(2)            <---------ANAC58      <---------SPL7               --------->DOF5.7(2)        --------->AHL20(2)   --------->MYB52(1)<---------WRKY18(1)  ---------->DOF2   <------NtERF2         ------>NtERF2 -----At4g35610<---------DEAR3(1) <-----------HVH21        <---------RAP2.6(3)    --------->LBD16 ---->At4g35610--------->DEAR3(1)<---------ANAC58         --------->RAP2.3(2)    <---------LBD16   -- --------AGL15--------->ATERF1(1)<---------ANAC58         --------->DEAR3(1)    <---------LBD16  <---   ctgagtaacagatagcgtcgccgtgaccggagaaggcgtccggcgaaagttgagcaagagccgtcgtaaacggtcttcgttttccggcgaaattaaaagc  21491400                                       ---------->DOF2                                        <------NtERF2                                 --------->ANAC55(2)                          --------------------->WRI1                                 <------MYB46(1)                            <---------At4g35610                                --------->MYB59                       <---------MYB46(3)     <-------                        <---------ANAC58                        <----------DOF2              <-------                        <---------ANAC46                       <---------ANAC58 <---------TOE1(3)     <----------DOF2    <---------ANAC58<---------TOE2(3)      <---------ANAC58 <---------TOE2(3) ->DOF2          <---------ANAC58<------MYB83            <------------------------ANAC81    <-------- ------->ALFIN1  <---------ANAC58<---------ANAC55(2)   <---------ANAC58     ----------->RAV1(2) ----- -------DOF2----------->GT1     <---------TOE2(3)      <---------ANAC58 ---------->ID1    <----------   tttggggctttagatggtttcttatggcctgaattaggtattaaagaagaagctatttcgtttttgctttgtttgttcttctgaggtttcttcgtcggag  21491500                                                                  <----------DOF2                                                                  <---------------AGL15 --ATERF1(1)                                                      --------------->AGL15 --DEAR3(2)                                                      <-----------------AGL3 -DEAR3(1)                    >>>>>>>>>TBF1                   <----------DOF2   <----------DOF2 ->NtERF2           <------ZmHOX2a(2)                      --------->GLK1(2)  <----------DOF2 -HVH21         ------>ZmHOX2a(1) --------->GLK1(2) <-----------GT1         <---------ZAT18         -   ccatttctcttcgtcttcctcgatcagtagaagaagaaactgttcattttctattttcgagtttctttctttttttagggctctttgtttggagccaaaa  21491600                                                                                            <--------                                                                                    <---------ATHB12                                                                     --------->ANAC58       <--------                <----------DOF2                                      --------->ANAC58--------->YAB1<-   <------------CBF                      ------------>CBF   --------->HSFB2a(2)   --------->WOX13(1) <---------AHL20(2)             --------->AHL20(2)          <---------HSFB2a(2) ------->GAMYB-------- -------->AHL20(2)             ----------->TBP <-----------GT1 ---------->DOF2  ------------>CBF <---   ttttaaattgcatttcaactttgcccaaatactataaatttcttccaatttgccatatagttttagaaagtaagctattcaacccaatcagaataaggtt  21491700                                                                                               <-----                                                                                            <--------                                                                                    <---------At5g28300                                                        <---------AHL20(2)    <---------AHL20(2) -TOE2(3)                                          <---------AHL20(2)      <---------ARR11(3) <------ -TOE1(3)                                      <---------CCA1(1)         --------->ICU4     --------- -----------CBF                                <---------RVE1(1)         <---------YAB1   --------->YAB1 --->GT1      ----------->GT1                 <---------ARR11(3)       --------->YAB1  <---------At4g35610 ------AHL20(2)     --------->AHL20(2)        --------->ARR11(3)      <-------TEIL <-----------GT1   ttattgaaaaacaaattagaaaaaaaatagttctgttcaactcaaaacgatattttttttaattcaaatagtttcatgattttttttaccgctcatgatt  21491800                                         <-----------GT1 ----YAB1                            --------->TOE2(3)                  <-----------GT1           --- -YAB1    ---------->DOF2        ------>ZmHOX2a(1)                ----------->GT1                 --- ---ARR11(3)                    <---------ANAC58                  <---------TOE2(3)     --------->ARR14(2) >ICU4 --------->TOE2(3)        <---------ANAC58         --------->AHL20(2)             <---------ARR14(2)   tttgtttaaacttaaagagacatgaaatgaaattccttacattaaactagatagtctaatgaaatattaagttattacattgtgtcttcggttcttccat  21491900                                                                                            ---------                                                                                            ---------                                                                                            ---------                                          --------->ARR11(3)                                ---------                                      --------->At4g35610                     ---------->ID1<--------                              <---------DAG2                                 <-------GAMYB  ---------                              <----------DOF2                               <-----------RAV1(1) ------>TOE2(3)          <---------MYB52(1)          <---------ZAT18        --------->MYB52(2) ------>YAB1        --------->MYB52(1)<---------At4g35610                   <---------MYB46(3)   ----   ccataacattgtccaaaatacaaaacggtttgctttattcagatgatatagctagtggtcttggccttgtagttttgtttgttgctactaatacacgtaa  21492000  Previous    Next  AGI:  At1g58050.1    Description:  helicase domain-containing protein. similar to helicase domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G58060.1); similar to hypothetical protein OsJ_014275 [Oryza sativa (japonica cultivar-group)] (GB:EAZ30792.1); similar to hypothetical protein OsI_015405 [Oryza sativa (indica cultivar-group)] (GB:EAY94172.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46983.1); contains InterPro domain Region of unknown function DUF1605 (InterPro:IPR011709); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR014001); contai Range:  from: 21482255    to: 21491504    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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