Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           <---------HSFC1(2)                                                                         --------->HSFB2a(1)                                                                         <---------HSFB2a(1)                                                                         --------->HSFC1(2)                                                                       <---------GLK1(2)                                                                       --------->ARR14(2)                                                                   <-------TEIL <----------DOF2                     ---------->DOF2                              --------->ARR14(1)      --------->ANAC58                                            --------->GLK1(2)      --------->ANAC58                                           <---------GLK1(2)      --------->ANAC46                                           --------->ARR14(2) -->HVH21   ------->GAMYB                                        <---------ARR14(2) --HVH21  <---------At4g35610                                    --------->ARR11(1)              ---- -AtMYB77 --------->At4g35610                      --------->At4g35610 <---------ARR14(2)  <<<<<<<<<TBF1   ggtctctcaggcaactgcatacagaaagaacacatcaagttatctccaagagcagataacacatccagattcggattcttccctttccccttcttcttcc  21421200                                              <---------MYB52(1)                      --------->At4g35610                                 --------->ZAT6--------->WRKY38(1)             --------->MYB46(3)                            <----------DOF2<------------AtMYB77           --------->ANAC58          <                        <---------ALFIN1  <---------At5g28300             --------->ANAC58 --------->TOE2(3)                    ------>ZmHOX2a(1)    --------->ARR14(2)         --------->ZAT14   <---------At4g35610 -->ZmHOX2a(1)   ------>ZmHOX2a(1)  <---------ATHB12         <----------DOF2 --------->MYB52(1)   ---   tcttctcttcttcatcatcctcctcaacacctttaccactcagtaaccgttgcctcatcttagctttctcttcagtactcaacgactcatcagcctcaat  21421300                                  <-------TEIL                            --------->At4g35610                            <---------ZAT2                            <---------At4g35610               <------ZmHOX2a(1)                     ----------->HVH21                        ================HOX2a_HOX2a                    ------>ZmHOX2a(2)                   <---------ARR14(2)                   --------->CCA1(2)                    --------->ARR14(2)                   <------ZmHOX2a(2)                   <------NtERF2                   --------->At4g35610                --------->LBD16                  --------->AGP1<---------ARR14(2)   --------->RAP2.3(2)                  <---------ARR14(2)                 --------->LBD16                  <-----------ARR10                  --------->RAP2.6(2)          --------->ZAT2    --------->ZAT2          <---------LBD16          --------->At4g35610   <---------GLK1(2)  --------->ABI4(1)                        <------ZmHOX2a(1)          <---------ZAT2   ----------->RAV1(1)     ------>NtERF2                  <------NtERF2          <---------At4g35610   --------->ARR14(2)--------->DEAR3(1)             --------->LBD16         <---------TOE1(2)<-----------RAV1(2)    --------->DEAR4(2)             --------->DEAR3(1)    ------->TEIL  --------->ARR14(2)             --------->DEAR3(2)            <---------LBD16 --------->ANAC58 <---------AGP1--------->ARR11(1)<---------ALFIN1     ============================HOX2a_HOX2a --------->ANAC58 <---------ARR11(3)             --------->MYB46(3)    ------>ZmHOX2a(2) <---------ICU4 --------->ANAC46 --------->ARR11(3)             --------->ORA47(2)  <---------ARR14(2)  --------->YAB1 ---------TOE1(2) --------->ARR14(3)           <---------ALFIN1      --------->ARR14(2) <---------ATHB12 ------>TOE1(2)   <---------ARR14(3)          <---------ABI4(2)     <------ZmHOX2a(1) --------->WOX13(1)   cgcacgaatcgcagctacaagatctgacccagcagattcgaaaccagtagcaccgccggaaacaggaagaggatcgatttcgccggagcaatcaggacaa  21421400                                                                             ========================                                                                             --------->TGA1a                                                                          ------>NtERF2                                                                          --------->LBD16                                                     ----------->HVH21   --------->RAP2.3(2)                                                   ----------->HVH21    --------->RAP2.3(1)                                                  ------->MYC3        --------->ALFIN1                                                  <-------PIF5       ------->MYC2                                                  ------->PIF5       <-------PIF5                                                  ------->MYC2       ------->MYC4                                                  <-------MYC4       <-------MYC4                                                  <-------MYC2       ------->PIF5                                                  ------->MYC4       ------->PIF4                                                  <-------MYC3       <-------PIF4                                                  ------->PIF4       <-------MYC3                                                  <-------PIF4       ------->MYC3                                                 <---------O2       --------->TGA1a                                                 ========================MYC_MYB                                                 --------->O2       =================================                                                 --------->TGA1a   ------------>OsbHLH66                                            --------->ANAC58      <------------OsbHLH66                                            --------->ANAC58     ------->GAMYB                                        --------->CCA1(2)        =============MYC_MYB            <---                                     XXXXXXXXXXXXXXXXXXXX>MIR164A/B------->TEIL                  ----                                     XXXXXXXXXXXXXXXXXXXX>MIR164C=============MYC_MYB          <-----                              ----------->GT1    <---------ANAC55(2)<---------TGA1a            ------               <---------ZAT2 <------MYB83  ----------->HVH21   --------->ANAC58              <------          --------->ALFIN1    <---------At4g35610--------->ANAC55(2)=================================        <---------ANAC46      <------MYB46(1)<------ZmHOX2a(1)  --------->ANAC58           <---------    --------->ZAT14           --------->At4g35610<---------TGA1a<---------MYB52(2)    --------->GLK1(2)    <---------ZAT14          <---------DEAR3(1) ------------>OsbHLH66<-------MYC2    <---------GLK1(2)   tgccactgtagagtggaagctagggttttgggaggtgaagagagacaggacacgtgccacggtgtaacgcacgtgccgcaagtgagagattcttcaggcg  21421500                                   <------NtERF2                                   --------->ATERF1(1)                                  <-----------HVH21                                  ------>NtERF2                                  <---------ATERF1(1)                                 --------->DEAR3(1)                                 <---------DEAR3(1)                                --------->ATERF1(1)                 <---------LBD16                                --------->RAP2.3(1)            --------->ICU4                                <------NtERF2               <------NtERF2      <---------ARR14(2)       <---------ATERF1(1)          <-----------------AGL3      --------->ARR14(2)       <---------RAP2.3(1)         ------>NtERF2    <------MYB83               ------>NtERF2              --------->ANAC58    <------MYB46(1)           <---------DEAR3(1)        --------->ANAC58    ----------->ARR10         --------->DEAR3(1)        <---------TGA1a  <--------P                 <------NtERF2              --------->ANAC55(2) <-------GAMYB               --------->ATERF1(1)        --------->ANAC58 ==========MYC_MYB          <---------ATERF1(1)         --------->TGA1a ========MYC_MYB            ------>NtERF2               ===============================bZIP_DOF ---NtERF2                  <-----------HVH21           <---------ANAC55(2) ----->ATERF1(1)           <---------DEAR3(1)        ----------->HVH21           <------ZmHOX2a(2) ----DEAR3(1)           --------->ANAC58            <-----------HVH21  ----------->GT1 --->ALFIN1             --------->ANAC58     <-------GAMYB--------->ANAC58      <---------ARR11(3) ---LBD16               --------->ANAC46    --------->ALFIN1----------------->AGL3 ==========MYC_MYB     --------->SPL7 <-----------RAV1(2) --------->ANAC46      --------->ARR11(3) --RAV1(2) <---------AtLEC2--------->DEAR3(1)=====================MYC_MYB   ---------->DOF2   gagggttggatttgcatcgcatgcatacgccgtcgccgtcgcaggggagttggatgtcacgcgccatttttgggggaaaaaagatcagagagtgagaaaa  21421600                                              <------------CBF                                      -                                        <---------HSFB2a(2)                                         -                                        --------->HSFB2a(2)                                <---------MYB46(3)                                        >>>>>>>ZML2                                       --------->ALFIN1                                        --------->HSFC1(1)                              <------NtERF2                                   --------->HSFC1(2)                                   <-------GAMYB           *TSS    --------->CCA1(2)    <---------HSFC1(1)                             <---------MYB46(3)           --------->GLK1(2)       --------->HSFB2a(1)                                 --------->MYB55(2)          <---------GLK1(2)        <---------HSFB2a(1)                                --------->ALFIN1          <---------ARR11(3)       <---------HSFC1(2)                 --------->ANAC58<---------ANAC46          --------->ARR11(3)       <------MYB83                       --------->ANAC58<---------ANAC58       --------->LBD16             <------MYB46(1)             --------->ALFIN1       <---------ANAC58   <---------ARR14(2)           <------ZmHOX2a(1)        ---------->DOF2       <---------ZAT14      <   tggtgtttccgagattttgagagatggagagagaggaaggttctagagaattgggaataaaaagagtgggaaacgaaatactgaagaggcgggtgtttga  21421700                                                      <---------AHL20(2)                                                    <---------CCA1(1)                                                    <---------RVE1(1)            <------ZmHOX2a(1)                      <---------GLK1(2)                                -           <----------ID1                          --------->ARR11(3)        --------->ZAT6        <-        ---------->DOF2                            <---------ARR11(3)      <-----------HVH21      <-- -------->AHL20(1)                             ---------->DOF2          <---------ANAC58          --- -------->ARR11(3)                         --------->ANAC58             <---------ANAC58     -------- ---------AHL20(1)      <----------DOF2    --------->ANAC58       <-----------RAV1(1)        <-------   aatattttgggaaaggacgagagcgtctttgaaattcaaaacgatacccaaaagatttttttggctatgtgttgtcttgtcactaggtttttttttttaa  21421800                                                                                            <--------                                                                                            ---------                                                                                           <---------YAB1                                                                                           --------->ICU4                                                                                      <------MYB46(1)                                      <---------ICU4                                  --------->ANAC55(2)                                     --------->ICU4                                   <---------ANAC55(2)                                     <---------YAB1                              <---------AHL20(2)                                  <---------YAB1                                --------->AHL20(2)                               <---------ARR14(2)                               <---------AHL20(2)                               --------->GLK1(2)                               <---------------AGL15   --------->YAB1             --------->GLK1(1)    ----------------->AGL1   --------->AHL20(2)  <---------YAB1         <---------LBD16      --------->ARR14(2)    <---------YAB1    <------MYB83 -------->YAB1       <---------AHL20(1)       <---------ARR14(2)   --------->ARR11(3)--------->MYB59 --------YAB1        --------->ARR11(3)    <---------ANAC55(2)     <---------ARR11(3)<---------TOE2(3) -------ARR11(3)     --------->AHL20(1)    --------->ANAC55(2)  --------->YAB1<-----------------AG ------>ARR11(3)     <---------ARR11(3)  <-----------GT1        --------->AHL20(2)   --------->MYB46(2) ->AHL20(2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   --------->ETT(1)  <---------AHL20(2) --AHL20(2) <-----------HVH21 <---------GLK1(1)   >>>>>>>>>>>>>>>>>LFY--------->WOX13(1)   <---------ATHB12   tatcatcatatcaaggtcagaaatattttcggaaatctgattattacatatttgccattgtcggaataatatcattcatttattaattaggtaatgattt  21421900                                              <---------AHL20(2)                                              --------->ATHB12                                             --------->AHL20(2)                                          <---------AHL20(2)                                          --------->AHL20(2)                              <---------AHL20(2)              <---------YAB1  --------->AHL20(2)                                      -------->P             --------->AHL20(2)           --------->ATHB51                            ------->TEIL -ICU4<---------LBD16   <---------At4g35610  <---------AHL20(2)         ------->GAMYB<-----------GT1 >ATHB12     <---------AHL20(2)<---------AHL20(2)                    ----------->RAV1(1)    <--------   ttaaaaattcgggattaaaattgttcatctaattttatgaagaattatttattagtcactaatttgatgttcaacagaaactaatatcaaccttcttttt  21422000                                                                                 ------>ZmHOX2a(2)                                                                                <------ZmHOX2a(2)                                                                               <---------ARR14(2)                                                                               --------->ARR14(2)                                                                               <---------AGP1                 ----------->GT1                                               <-----------ARR10     <---------YAB1                                                            --------->ARR14(3)  <---------AHL20(1)                                                           <---------ARR14(3)  <---------AHL20(2)                                                           --------->ARR11(3)  --------->AHL20(1)                                                           --------->AGP1  --------->AHL20(2)    ----------->GT1                          <-----------RAV1(1)                < --DOF2<---------AHL20(2)                           <---------YAB1             <---------ARR11(3)----   aaaatttattattttgaaattgtaaatggtttatatcgatttgcaaaaactattttgatggtatacaatgttgcattacaagatcttggtaaatggttca  21422100  Previous    Next  AGI:  At1g57820.1    Description:  ORTH2/VIM1 (VARIANT IN METHYLATION 1); DNA binding / chromatin binding / double-stranded methylated DNA binding / histone binding / methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding. similar to VIM2 (VARIANT IN METHYLATION 2), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G66050.1); similar to VIM5 (VARIANT IN METHYLATION 5), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G57800.1); similar to ORTH1/VIM3 (VARIANT IN METHYLATION 3), methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G39550.1); similar to pr Range:  from: 21417835    to: 21421611    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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