Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    --------->ANAC46                                                  --------->ANAC58                                                  --------->ANAC58                                                ----------->RAV1(1)                                         <---------HSFC1(1)         --------->ANAC55(2)             <---------HSFB2a(2)                     --------->ANAC46         <---------ANAC55(2)             --------->HSFB2a(2)        --------->ANAC58       <---------ANAC46    --------->WOX13(1)                 <-------TEIL   --------->ANAC58           --------->ANAC58  --------->AHL20(2)                  --------->CCA1(2)             --------->ANAC58------->TEIL ---------ANAC55(2)                  --------->ARR11(1)       <----------ID1  <---------ZAT14 ---------->GT1       <---------YAB1 <---------GLK1(2)--------->ANAC58        --------->ZAT14 ---->YAB1 ----------->HVH21         <---------ARR14(2)     ---------->DOF2   --------->ZAT18 ------->AGL15    --------->YAB1     --------->ARR14(2) --------->YAB1 ---------->DOF2  ----------->HVH21 --------AGL15   <---------ATHB51<-------TEIL   --------->AtMYB61 ---------->DOF2--------->ANAC58   ataagtaaatcaagtgacaataatgtgattcaacatacagattcgagaaaccacacaagcataagagccaaagcaaagagtacacgaaccgagacgggtt  21415500                                                             <----------DOF2                                                            --------->TOE2(3)                                                           <------------------------ANAC81                         <<<<<<<<<TAC1                  <----------DOF2                      --------->ZAT14                  <---------ANAC58                        ------                 ---------->DOF2                       <---------ANAC58    <<<<<<<<<TBF1      -------            --------->AtLEC2                          ----------------------->TaNAC69(2)<-----------TGA1   tttgtagcgactgcatgcagaaagaacactcgaagtgagatagcacatcgatgggtttctttcctttactcgtcttcttcttctcttcttcgtcatcctc  21415600                                                                                                    -                                                                                                    <                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                           --------->At4g35610                                                                                           ------>NtERF2                                                                      --------->LBD16     --------->ANAC46         <---------DAG2   --------->At4g35610                         ------>NtERF2       --------->DEAR3(1)   ------>NtERF2 <---------ATHB12                                    --------->ANAC46    --------->RAP2.3(1)   <---------ATERF1(1)    <---------At4g35610                        ------->GAMYB   --------->ARR14(2)   --------->AtMYB61     <-----------RAV1(1)                    <-------TEIL         <---------ARR14(2)  --------->MYB46(3)    <------------AtMYB77        --------->ZAT2  --------->MYB46(3) ------>ZmHOX2a(2)  --------->DEAR3(1)  <---------ARR14(2)            <---------ZAT2 <---------At4g35610<---------GLK1(1) >ZmHOX2a(1)  --------->ZAT6 <---------At4g35610    --------->At4g35610           --------->ALFIN1 -- -->TOE2(3) -------->P--------->ARR14(2)            <---------At4g35610         <---------ANAC46   <-   atcgacgacccccttaccactcagtaactgctgcttcttcttagccttctcttcagcagagagagtttcatccgcctcaatcgagtggatcgccgctaca  21415700               <-----------------------TaNAC69(2)               <-------TEIL              ====================================HOX2a_HOX2a              <------ZmHOX2a(2)             --------->AGP1         ------>MYB83            <---------LBD16         ------>MYB46(1)     ----------->RAV1(1)        --------->MYB52(1)--------->RRTF1(2)        ----------->RAV1(1)--------->LBD16      --------->MYB46(3)  --------->RAP2.6(2) ------>ZmHOX2a(2)        --------->ANAC46 -------->CCA1(2)         --------->RAP2.3(2) ------ZmHOX2a(2)         --------->ANAC58                                    --------->ANAC58 ------->ARR11(3)         --------->ANAC58           <------MYB83             --------->ANAC58 ------->ARR14(2)        --------->RAP2.3(1)         <------MYB46(1)    <----------ID1 --------ARR14(2)       --------->At4g35610         <---------AtMYB61 --------->YAB1 --------ARR11(3)       <---------At4g35610<------ZmHOX2a(1)  --------->LBD16 --------->ANAC46 --------ARR14(3)  <---------ARR14(2)--------->ARR14(2)     <---------LBD16 ---------->DOF2 ------->ARR14(3)  --------->ARR14(2)<---------ARR14(2)   <-----------GT1<------ZmHOX2a(1) --------AGP1--------->ARR14(2) --------->MYB52(1)<---------ARR14(2)  <---------ICU4 ------->AGP1<---------ARR14(2)<---------ALFIN1  <------ZmHOX2a(1) --------->WOX13(1)   --------->DAG2 ----------ARR10  <---------CCA1(2)--------->LBD16--------->ARR14(2) <---------ATHB12  ---------->DOF2   agatctgaaccaacagatccatatccagccgcaacaccggaaacaggaagaggattggtttcaccggagcaatcaggacaaagccactgtaaagtagcac  21415800                                                       --------->LBD16                                                       ------>NtERF2                               ------->MYC3           --------->RAP2.3(2)                               ------->MYC2          --------->RAP2.3(1)                               <-------MYC4       <-------PIF5                               <-------MYC3       ------->PIF5                               ------->MYC4       ------->MYC4                               <-------MYC2       ------->MYC2                               <-------PIF5       <-------MYC2                               ------->PIF5       <-------MYC4                               ------->PIF4       <-------MYC3                              <---------TGA1a     <-------PIF4                              <---------ANAC55(2) ------->PIF4                    --------->DAG2      <---------ANAC46                   ========================================bZIP_DOF                   ========================================bZIP_DOF                   ---------->DOF2      <---------ANAC58                   =====================bZIP_DOF --------->TGA1a                  =========================================bZIP_DOF                  ---------->DOF2       <---------ANAC58                  ======================bZIP_DOF------->TEIL                  =========================================bZIP_DOF              ------>NtERF2   --------->TGA1a   ------------>OsbHLH66            <------NtERF2     <---------O2     <---------ALFIN1                  <------NtERF2            --------->ATERF1(1)<-------PIF4    <------------OsbHLH66         <---------MYB46(3)           <---------ATERF1(1)--------->ANAC55(2)<---------TGA1a            --------->ALFIN1          <---------DEAR3(1)  --------->O2   --------->ANAC58           <---------LBD16          <---------ANAC46   ------------>OsbHLH66------->MYC3         ------>ZmHOX2a(1)          --------->ALFIN1----------------->PIF3(1)--------->ALFIN1--------->ARR14(2)      <---------ANAC46    <------ZmHOX2a(1)  --------->ANAC58      --------->GLK1(2)      <---------ANAC58   --------->ANAC58 --------->ALFIN1         <---------ARR14(2)      <---------ANAC58   --------->ANAC58<-----------HVH21--------->TGA1a --------->LBD16   <--------      <---------LBD16    ----------->HVH21----------->HVH21       <---------GLK1(2) <------NtERF2   ttagggtttcgggcggggacaaaaggcaggacacgtgccaaggcgtgacgcacgtgccgcaagtgagagattcctccggtggaggcatcgatttgcatcg  21415900                                                    --------->YAB1                                                   --------->ICU4                                         <------NtERF2                                        <-----------HVH21               <-----------HVH21     <---------ATERF1(1)           <---------LBD16         <-----------RAV1(2)<---------YAB1     <---------ALFIN1             <------NtERF2    <---------ATHB12                   --------->CCA1(2) -AtLEC2  <---------LBD16       --------->ALFIN1 <---------At4g35610                --------->CCA1(2)   catgcatacaccttcggggtcgcatgggtactgggtggcaggcgtcatttccgatgatgagaatagccaaaagattagagagagagagataagatgaaga  21416000                                                                        --------->ARR11(3)                                                                        <---------ARR11(3)                                                                       --------->GLK1(1)                                                                       <---------GLK1(1)                                                                      <---------ARR11(3)                                                                      --------->ARR11(3)                                                                 <------ZmHOX2a(1)                                                               <---------TOE2(3)                                                         <---------------AGL15                                                         --------------->AGL15                         <---------TOE2(3)              ----------------->AG                      <--                       ---------->DOF2                  ----------------->AGL1                  <----                 ----------->GT1                        <-----------------AGL2                  <----                --------->DAG2                          <-----------------AG <----------DOF2   ------               ---------->DOF2                          ----------------->AGL3                 ------            --------->ANAC58                        ---------->DOF2  <------ZmHOX2a(1)         <-----            --------->ANAC58        --------->AHL20(2)  <-----------------AGL3       <-----------HVH21   agagggacacaaacaagaaaagtgaaaaaggttttcaaatatttagggcttcaaaatagccgtataaggaaggatatctcttttagttgtcagaaaatat  21416100                                             <---------YAB1                  <---------ICU4                       <----------DOF2      --------->ARR11(3)               --------->YAB1                   <-----------GT1          <---------ARR11(3)              <---------YAB1     ------>ZmHOX2a(1)--------->TOE2(3)    --------->YAB1                   --------->ICU4 ----------CBF  <---------ICU4            <---------YAB1                  <---------ICU4 -----YAB1 --------->AHL20(2)           -------->HAHB4                   --------->ICU4 -----AHL20(2) --------->AHL20(2)       <---------ICU4                  --------->ANAC55(2) --->AHL20(1) --------->AHL20(1)        --------->YAB1          --------->At5g28300 --->AHL20(2) <---------AHL20(2)       --------->ICU4          ----------->GT1 <---------YAB1 ----AHL20(1) <---------AHL20(1)       <---------ATHB51--------->CCA1(2)<---------ANAC55(2)     -----   aattgtcctactataaaatatttacctttgaatatagactaattatgatatttgaatatacaagatggtaaaatacttattattatttcatatatcaaaa  21416200       <---------AHL20(2)      --------->AHL20(1)      <---------AHL20(1)                                                     --------->AHL20(2)    <---------AHL20(1)   <----------DOF2                                  ------>MYB83---------->DOF2    --------->AHL20(1)   <---------ANAC46                                 ------>MYB46(1)   --------->AHL20(2)  ------>NtERF2          <---------MYB46(3)        <---------MYB59   --------->ARR11(3) ----->DOF2     --------->KAN4(2)    --------->YAB1          <----------DOF2--------->AHL20(2)      -   aagaaatatatatttgaaaattctctgccttatagactattacaaggtttgttctcagcatttcttttctaataccaaataaaaaaaaaaaagataacca  21416300                                                                    <---------AHL20(2)                     --------->ALFIN1                               --------->AHL20(2)                <---------LBD16                               --------->ANAC55(2)              <---------SPL7                                  --------->ANAC58            <---------TOE2(3)                                 --------->ANAC46         <---------AHL20(2)            --------->ANAC58       --------->ANAC58         --------->AHL20(2)            --------->ANAC46       --------->ANAC55(1)  --------->ANAC46        --------->YAB1<-------GAMYB    --------->ANAC58       <---------ANAC55(2) <---------LBD16 ----------->GT1------->TEIL--------->ANAC46                <-----------GT1      --------->ANAC46 ------>TEIL<---------------AtSPL3 --------->YAB1  --------->ICU4------->TEIL   <---------REM1(2)   tggatgttaattttaatgtacgggtgttagaaggcacttataagctatatgtgatgttgatttcacgtatttaaacaatgtctacgcggtagtccccaaa  21416400  Previous    Next  AGI:  At1g57800.1    Description:  VIM5 (VARIANT IN METHYLATION 5); protein binding / zinc ion binding. similar to ORTH2/VIM1 (VARIANT IN METHYLATION 1), DNA binding [Arabidopsis thaliana] (TAIR:AT1G57820.2); similar to ORTH2/VIM1 (VARIANT IN METHYLATION 1), DNA binding / chromatin binding / double-stranded methylated DNA binding / histone binding / methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding [Arabidopsis thaliana] (TAIR:AT1G57820.1); similar to ORTH1/VIM3 (VARIANT IN METHYLATION 3), methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G39550.1); similar to predicted protein [ Range:  from: 21412288    to: 21415948    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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