Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        ------>MYB83                                      ------>MYB46(1)                                      --------->MYB52(1)                                     --------->MYB55(1)                                    --------->MYB46(3)                                    --------->AtMYB61                                    <---------MYB46(2)                              <----------DOF2                   <------------MYB.PH3(1)                                                         --                 <-----------GT1    <---------MYB55(2)                                           <---                 --------->MYB52(1)--------->ANAC46       <-----------RAV1(1)               <--------         --------->REM1(1)  ---------->ID1           --------->YAB1   ---------->DOF2  --------->YAB1   aatacaaggctacaatatttaacggtttttgtctttcaccaaacggataatggaataacaatgttggatttagaaagaacagtttgaaataatagaattt  21257100                                                                                                 <---                                                                                            <--------                                                                                            <--------                                                                                            ---------                                                                                        <XXXXXXXXXXXX                                                                       --------->YAB1  <---------AHL20(1)                                                            ------>ZmHOX2a(2)          <---------AHL20(2) ------->ANAC55(2)                         <-------GAMYB   <---------GLK1(1)           --------->AHL20(1) --------GT1                    <-----------GT1           --------->ARR11(3)           --------->AHL20(2) -GLK1(2)            <----------DOF2     ---------->ID1   <---------ARR11(3)          --------->AHL20(2)   cacttgattactcaaaactattactttagaagataaaccatttgtcgttgttgttgtgatgatctctgaaaaatcaaaacaattcgaattttattttatt  21257200                                   --------->GLK1(2)                                  --------->ARR11(3)                                            -----                                  <---------ARR11(3)                                 <------------CBF                                  --------->ARR14(2)                               --------->AHL20(2)                       ------>NtERF2 <-----------GT1                               --------->AHL20(1)       ---------->DOF2<---------bZIP60(1)                                          <---------AHL20(2)      --------->AHL20(2)          <---------ARR14(2)                              --------->AHL20(2)      <---------AHL20(2)----------------->AGL3                               <---------MYB52(1) <---- ------AHL20(2)       --------->ANAC46                                 <---------ARR14(2)       <---- -AHL20(2)            --------->ANAC58                           --------->GLK1(2)<---------AHL20(2) -AHL20(1)            --------->bZIP60(1)                ---------->DOF2   ----------->GT1      ----- >AHL20(2)            --------->ANAC58            ------>ZmHOX2a(2)   ----------->HVH21    ------>ZmHOX2a(2) XXXXXXXXMIR1886.1--------->SPL7  <---------GLK1(2)   --------->TOE2(3)--------->ARR14(2)  ----------   tttttcatttaaagacatagtacgacgccattaaaagattctccatatttgatctacattaaagacgaatcagtaaccggttaattaaattgatccaatt  21257300                                            --------->YAB1                                           <---------YAB1                                         --------->YAB1                                         -------->ATHB1                                         <--------HAHB4                                         --------->ATHB51                                         <---------ICU4                                        --------->ICU4                                <---------ICU4 <---------AHL20(2)             --------->AHL20(2) <-----------GT1               <---------AHL20(2) ---->AHL20(1)                 --------->AHL20(2)                                            <------- -----AHL20(1)       --------->At4g35610<---------ATHB12                                   --------->At4g35610 -----AHL20(2)       <---------At4g35610<---------ATHB51                               <-----------HVH21 ---->AHL20(2)    ---------->DOF2   ------------>CBF                                <------------CBF -->CBF    <-----------GT1 --------->AHL20(2) <---------YAB1                 ------>NtERF2 <---------At4g35610   tattaacttgatttttccattaaagctgaataaataatttcaattattataaattctaaaaacccttatacaaacgctctgcccaaaattgtcagcttta  21257400                                  <----------DOF2                                <---------YAB1                               --------->ARR11(3)                               <---------ARR11(3)                             <---------YAB1               <---------AHL20(2) --------->TOE2(3)       ------>NtERF2       <---------ICU4      --------->ANAC46    <---------YAB1                                      <---------TOE2(3)    <---------ANAC58      --------->ICU4                                   <---------YAB1    <---------ANAC58    <---------ICU4                                     <---------WOX13(1) <----------DOF2       <---------YAB1                            --------->GLK1(2)  ----------->GT1 ---DOF2<------NtERF2  --------->ICU4 <-----------GT1    <---------YAB1 <---------YAB1   ---------->DOF2   gagctttcgcgcctcattttatgtcatgattattatctttaaaccacatttgaatcactctcattagaatcagtttgattaatgaagcgtttaaagctaa  21257500                                                              --------->ANAC58                                                              --------->ANAC58                                                              --------->ANAC46                                                     <---------TGA1a                                                     --------->O2                                                     ======================================bZIP_DOF                                                     --------->ANAC55(2)                                                     <---------ANAC55(2)                                                     <---------O2<---------ARR14(2)                            <---------ANAC46         --------->TGA1a                          --------->ZAT14            --------->ANAC58           ---------->DOF2                    --------->ANAC58                 --------->ANAC46----------->GT1               ----------->HVH21                     ======================================bZIP_DOF             <---------ANAC58                        --------->ANAC58--------->LBD16    ---------->DOF2             <---------ANAC55(2)                 ------>ZmHOX2a(2) <---------LBD16    --------->ANAC58             <---------ANAC58                   <------ZmHOX2a(2)------->TEIL  <---------ATHB12             --------->ANAC55(2)               --------->ARR11(3)--------->GLK1(2)    --------->ANAC46       <---------ARR14(2) <---------ZAT14      <---------ARR11(3)--------->ARR14(2)   --------->ANAC58    --------->ANAC46--------->ANAC58    ----------------------->TaNAC69(2)   --------->WOX13(1)<-----   tcttacgcagaacttacttgacaagcactggagtgaattgcagttttgagatctcacgtctctcacgaatcgggaaaatcaatgaagcacgaaagttttt  21257600                                                                               --------->ANAC58                                                                               --------->ANAC46                                                                               --------->ANAC58                                                                              --------->ZAT18                                                                      ---------->DOF2                                                                    --------------->AGL15                         <-------TEIL                               <---------------AGL15               --------->ANAC58                        =============================MADS_MADS        ============================================================================MADS_MADS        --------------->AGL15             --------->ARR14(2)       ----------------->AG        <---------------AGL15             <---------ARR14(2)       ----------------->AGL1 <-------TEIL  --------->ANAC58           ------->TEIL <---------------AGL15 <---------ALFIN1-------- ------GT1   ---------->DOF2             <---------CCA1(2)     <-----------HVH21   ------>NtERF2   cgattcgttacagtttaaagcaatcggttcatggaactcaattgtatctgggtatttctcaaacgggttaccgaaagaagcacgccaactgttcgacgaa  21257700                                <---------MYB46(3)                                <------MYB83                                <------MYB46(1)                                --------->MYB52(2)                               <---------AtMYB61                              <--------P                     <---------HSFB2a(2)                     --------->LBD16                     ------>ZmHOX2a(1)                          <---------HSFB2a(2)                     --------->HSFB2a(2)                   --------->ATHB12                    <---------LBD16  <-----------RAV1(2)  <---------YAB1              <---------At4g35610                   <---------ANAC46  <---------LBD16    <------ZmHOX2a(1) <------ZmHOX2a(1) ->ANAC46          ----------->RAV1(2)           <---------TOE2(3)    --------->TOE1(2)   atgtctgagagaaatgtagtttcctggaacgggttggtttcagggtatattaagaataggatgattgtagaagctaggaatgtgtttgagctaatgcctg  21257800                                                              <---------At4g35610                                                           ---------->DOF2                                                          <---------REM1(1)                                                        <------MYB46(1)                                                        <---------MYB46(3)                                                        <------MYB83                                                       --------->MYB111(2)                                                       --------->MYB46(2)                          <-------GAMYB                <---------AtMYB61                <---------PCF5         --------->ANAC58<---------MYB46(3)               --------->WRKY38(1)     --------->ANAC46<---------DEAR3(1)               --------->WRKY12        --------->ANAC58--------->MYB55(2)            <---------ANAC46           --------->AtLEC2--------->MYB111(1)            <---------bZIP60(2) ----------->GT1       <---------MYB55(1)            <---------ANAC58   <---------TOE1(3)      <--------P  <---------ARR14(2)            <---------O2 ----------->GT1            --------->ATHB12            <---------ANAC58   <---------TOE2(3)    <---------MYB46(3)         <-----------RAV1(1) ---------->DOF2       <---------AtMYB61    <----------DOF2            <- <------ZmHOX2a(1)       <---------MYB46(3)        <---------YAB1 --------->ARR14(2)          <------ZmHOX2a(1)   agaggaatgttgtgtcgtggaccgcgatggttaaaggttacatgcaagaaggtatggttggtgaagcggagtcgctgttttggagaatgcctgagaggaa  21257900                              --------->ATHB12                             <---------YAB1                         --------->MYB55(2)                         <---------MYB46(3)                      <---------ANAC46                      <------MYB83  <---------YAB1                      <------MYB46(1)                     --------->MYB55(2)                                                            <-                     --------->MYB46(2)                                                           <--                     --------->MYB111(2)                  --------->ANAC58                   <-------                  --------->ATHB12 <---------TOE2(3)  --------->ANAC58                   --------->ARR11(3)                 --------->ICU4   --------->YAB1     --------->DAG2                   <---------TOE2(3)     <---------ANAC46<---------AtMYB61           --------->YAB1                      ---------->DOF2     <---------ANAC58<---------MYB46(3)<---------WOX13(1) --------->ANAC58     <---------ANAC58   <--     <---------ANAC58--------->MYB111(1)  ------->TEIL--------->ANAC58         <---------ANAC58   <-- --------TOE2(3) <---------YAB1 <---------WOX13(1)  ---------->DOF2     --------->CCA1(2)<---------ARR11(3)   tgaggtttcttggactgtgatgtttggtggtttgattgatgatggacgtattgataaagcaaggaagttgtatgatatgatgcctgttaaagatgttgta  21258000  Previous    Next  AGI:  At1g56690.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G02750.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G09410.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17379.1); similar to hypothetical protein OsI_011004 [Oryza sativa (indica cultivar-group)] (GB:EAY89771.1); similar to pentatricopeptide, putative [Oryza sativa (japonica cultivar-group)] (GB:ABF95626.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 21257482    to: 21259596    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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