Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             ----------->GT1                     --------->AHL20(2)                 --------->AHL20(1)                 <---------AHL20(1)                 <---------AHL20(2)                                                    --------->YAB1                 --------->AHL20(2)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                <---------AHL20(2)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                --------->AHL20(2)                       --------->MYB52(1)           <---------ATHB12             --------->AHL20(2)                    ----------->GT1                   xxxxxxxxxxxxxxxx            --------->AHL20(2)      --------->AHL20(2)   <-----------GT1     --------->ANAC58    <---------YAB1   <---------AHL20(2)      <---------TOE2(3)               --------->ANAC58   gcccatatgatacaataaataaattaaaaatgtaacaataaaacattgtggttttgttataacggttcaactaaatcccaagcttcaaatcatatgaaaa  21215200                                                                       ------>MYB83<-----------------AGL3                                                                       ------>MYB46(1)  ----------->GT1                                                      --------->MYB52(1)  <---------ZAT6                                <---------ARR14(2)    --------->MYB55(1) <---------TOE2(3)                <<<<<<<<<RAP2.2                    <---------MYB46(2)   --------->HSFB2a(2) <---------TOE1(3)               <---------TOE2(3)  ----------->GT1  <---------MYB59--------------->AGL15 xxxxxxx>smallRNA(si3)   <---------TOE2(3)  <---------LBD16          --------->MYB46(3)   <---------HSFB2a(2)   tttagggttaaaatttttgtttgatttaagaattttagattgaatttggggatttagttaatacactattaccaaacgatatcgctctgtttttagaaac  21215300                                            <---------MYB52(1)                                           <-------GAMYB                                     <-----------GT1                 <---------GLK1(2)  --------->AHL20(2)               <---------TOE2(3)--------->AHL20(1)                                      <---------WRKY12             ---------->DOF2    --------->AHL20(2)                                      <---------WRKY38(1)            <---------AHL20(2)  <---------AHL20(2)                                     --------->WRKY18(1)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)----------->GT1<---------AHL20(2)          --------->At4g35610 <---------TOE2(3)             --------->AHL20(2)  <------ZmHOX2a(1)                --------->MYB59   aataacgttttgaattaaaggttctctgttaaaaaaaattaactccgttaataggatatataatctacttaatagtatgcctaaatcaggtcaacaaaat  21215400               <------MYB83               ----------->GT1         <----------DOF2                                     <---------ARR11(3)               <------MYB46(1)      <-----------GT1                       xxxxxxxxxxxxxxxx>smallRNA(i)      --------->AHL20(2)            <---------AHL20(2)                 <---------TOE2(3)   <---------ARR14(2)      <---------AHL20(2)         <---------ICU4                 <---------AHL20(2)        <------ZmHOX2a(1)   <-----------------AGL3<---------AHL20(2)                 <------ZmHOX2a(1)  --------->TOE2(3)  <--  <---------RVE1(1)    --------->AHL20(2)                 <---------TOE2(3)  <---------YAB1--------->ARR14(2)  <---------CCA1(1)    <---------AHL20(2)     <---------ANAC46  --------->AHL20(2)      <---------TOE2(3)   ttggatatttatttggaaggttaatataaatttgatatttactttgttttgtggagaattgaggatttaaatcaacgttttcattaacttgaggatttta  21215500                                   <----------ID1                                   ----------->GT1           --------->LBD16       ---------->DOF2         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     <-----------GT1       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             ------>ZmHOX2a(1)          <---------AHL20(2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)            <---------ZAT18    <----------DOF2 <---------RVE1(1)     ---------->ID1                  --------->ZAT14<---------CCA1(2)    --------->ANAC46 -------ZAT6 <xxxxxxxxxxxxxxxxxsmallRNA(se3)---------->DOF2   <---------CCA1(2)    --------->AHL20(2)   gtgatattttctccgaaaatgttttgtcccaaaaaaaaagaaaaaaaaaagtctcagtcctctcatttctccatctctttttcgatttaataaacacaag  21215600                                            *TSS                                         <---------ANAC58                        ------->GAMYB   <-------TEIL                            --------->AHL20(2)                 --------->At4g35610 <---------ZAT2                             <---------AHL20(2)                 <---------At4g35610 --------->ZAT2                  <---------GLK1(1)             --------->ARR14(2)    <-----------RAV1(2)  ---------->ID1       <----------DOF2          --------->AHL20(2)     --------->ANAC46   <----------DOF2  --------->GLK1(1)              -      ----------->GT1  --------->MYB46(3)<---------ANAC58          <------ZmHOX2a(1)  --------->TOE2(3)   gaggcttagggtttaaatctgctcaaccacgattcacacaggtgcgttctgtttctttgttgttttggaggatttcatgcttttaatttcttaatctata  21215700                                                                   --------->TOE2(3)                                                                 <-----------ARR10                                                          --------->YAB1                          ----------->GT1             ------>ZmHOX2a(1) --------->DAG2    --------->ANAC58             <---------ANAC58 <---------ARR11(3)              ---- --------->DOF2    --------->ANAC58             <---------ANAC58 --------->ARR11(3)       <---------DOF5.7(2)   gaaaaagtcatttgaaaatggaagcaaattgaaaattagttccatgagttgtgttcctaatgagaagtatcttagtagctcgaattgtcccttaacgtcc  21215800                                <---------GLK1(1)                              --------->ATHB12                     --------->ARR14(2)                     <---------GLK1(2)               <---------AHL20(2)            --------->ATHB12<----------DOF2                  <----------DOF2           <---------YAB1<---------YAB1                     <---------ANAC58  <---------AHL20(2) <---------ARR14(2)                     <---------ANAC58 -->ZmHOX2a(1)<---------YAB1<---------WOX13(1) <----------DOF2                <----------DOF2      --   ttatatttttagtatgattaatggattctgcttgatttctctatgtgtgatttatgggttttgctttagttctcatatttctttttggtttctacttgtt  21215900                                       <----------DOF2                                       <---------DAG2                                 ------>ZmHOX2a(1)                                 <----------DOF2                               --------->GLK1(1)      --------->DAG2    ------>ZmHOX2a(1)        --------->ATHB12<----------DOF2     ---------->DOF2   --------->TOE2(3)        <---------YAB1  <---------ANAC58                    < ---->ZmHOX2a(1)    <-----------GT1 <-----------GT1             <---------ANAC58                    <   cctgatgaaaagtagctcgatttttcctcaacgtccttttacttttttgtatgatttatgggttttgcttttagttctcagatttctattttctcttata  21216000                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                  ---                                                                                                 <---                                                                                             <-------                                                                                             <-------                                        ----------->HVH21                                    <-------                                 <-------GAMYB                                          =============                                <---------MYB46(3)                                      =============    <---------AHL20(2)          --------->MYB52(2)                                      <---------TGA1a   <---------AHL20(2)      <---------TOE1(3)          --------->YAB1                    <---------O2   --------->AHL20(2)      <---------TOE2(3)       --------->YAB1        =========================bZIP_DOF ---------ARR11(3)  --------->AHL20(2)--------->At4g35610        --------->MYB52(1)     --------->O2 ---------GLK1(2)   <---------AHL20(2)<---------At4g35610   >>>>>>>>>TBF1<----------DOF2--------->TGA1a   cagattttaattttgtgtttgtttaatttcaggtttgttgagatgacatcgaataataagaagaagaaaacggagctttgtgatttgcccaagtgtcttg  21216100  Previous    Next  AGI:  At1g56610.1    Description:  syntaxin-related family protein. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G14096.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63564.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 21215644    to: 21218227    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version