Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                ------>ZmHOX2a(1)                                                                                      <---------AtMYB61                                                      <---------At4g35610             <---------MYB46(3)                                                      --------->At4g35610            <---------MYB55(1)                                                   ---------->DOF2       ------>ZmHOX2a(1)    =======                                                  ------->GAMYB          <---------HSFB2a(2)<--------  <---------MYB46(3)                           --------->MYB52(1)   <---------HSFB2a(1)<------MYB83 >WRKY38(1)                                <------ZmHOX2a(1)        --------->HSFB2a(1)<------MYB46(1) >WRKY12             <-------GAMYB      <---------LBD16           ---------->DOF2    <--------P   tcagtggttccattgttcttctccgttgcaggcttctcaacttcaggaacaacgaaagcagacactgggaaagtcctggacagaccagttggtgtcctga  21202200                        <---------At4g35610                        --------->At4g35610                        <---------ZAT2                       <---------ATERF1(1)                     <---------ZAT2                     --------->At4g35610                     <-------GAMYB                     <---------At4g35610                     <------NtERF2                   <---------RAP2.6(2)                   <---------DREB2C(2)                   <---------RAP2.3(3)                   <---------DEAR3(1)                   --------->ETT(1)                   <---------At1g77200                                                            <--                  --------->RAP2.6(3)                          <---------HSFB2a(1)               ----                 <-----------HVH21 --------->ANAC58            --------->HSFB2a(1)             <-----          --------->LBD16     --------->ANAC46                 --------->HSFC1(2)          ----------    ------>ZmHOX2a(2)--------->ATERF1(1)                       <---------HSFC1(2)      <---------HSFC1(2)  <---------ARR11(3)<---------RAP2.3(1)             --------------->AGL15              --------->HSFC1(2)  --------->ARR11(3)<---------DEAR3(2)              <---------------AGL15           <--------P ------ ==========HOX2a_HOX2a<---------DEAR3(1)        ----------->HVH21      ---------->ID1  <---------At4g35610 -ANAC46--------------------->WRI1 --------->ANAC58----------------->AGL1          <---------MYB52(1)   aattgatcttccctgaacttgtcggctgctccaagacaagctcattgagagtgacccaaataagaagctccttggccttaacaccggtaagcttcttgat  21202300                                       --------->CCA1(2)                                 <---------SPL7                                <---------ANAC58                                <---------bZIP60(1)           ----------->RAV1(2)  <---------ANAC58         <---------ALFIN1       <---------ANAC46      --------->AtMYB61       ------>NtERF2  <---------ETT(1)           <---------DEAR3(1) --------DOF2                --------->ALFIN1 -->ZmHOX2a(2)            <---------DEAR3(1) ----ARR11(3)   --------->ZAT14<------NtERF2                                          <---------At4g35610 ----------->WRI1   ----------->HVH21 <----------ID1                <---------MYB46(3)--------->At4g35610 --->ARR11(3)   <---------ZAT14<-----------------------TaNAC69(2)  <---------ANAC46<---------At4g35610   ctttccgacctccacctgtgcaatgacctcggtggcgtaagagacaagtttaccaatggcttcaaacttgtgggtgatgctcttcttctgcttcagccag  21202400                                                                          <---------ANAC58         --                        ------>MYB83                                      <---------ANAC58         --                      ------->GAMYB                                  --------->HSFB2a(1)           --                     --------->MYB46(3)               <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <--                     <------------MYB.PH3(2)        <-----------GT1  <---------HSFB2a(1)      <------                <---------ANAC58                  <---------ATHB12   <---------HSFC1(2)       -------                <---------ANAC58     <-----------------AGL1          --------->HSFC1(2)    ----------       <---------CCA1(2)------>MYB46(1)------>ZmHOX2a(1) <---------MYB52(1)            <----------DOF2   acaatacctgtctctctgtcgtaaccaacttcttcaatgtccttcaatggcaataaaccattaggcatagaaacttccttgagaaactcctttgtcttct  21202500           <---------At4g35610     --------->ARR14(2)     <---------ARR14(2)     <-----------ARR10     --------->ARR11(3)    <---------GLK1(1)    --------->GLK1(1)    <xxxxxxxxxxxxxxxxxsmallRNA(fl3)    <---------CCA1(2)                                          <---------CCA1(2) ------->ANAC58                                          ------>MYB46(1) ------->ANAC58                                          ------>MYB83                          <----- ------->ANAC46                                        --------->AtMYB61              <----------DOF2 -------LBD16                                          <---------MYB59               <---------ANAC58 ---At4g35610   ------>ZmHOX2a(1)              <---------At4g35610                   <---------ANAC58 -->At4g35610 ----------->RAV1(2)  --------->ZAT2     --------->MYB46(3)        <---------MYB46(3) >ID1<---------ARR11(3)      ------>NtERF2     --------->At4g35610   <---------MYB52(1)      <-------   cacggcatatctcatctcctgtgtatttctctgccctagctctcacttcatctgtaaccaaacccatctctgttttttttggtgtttgctttgttttgtg  21202600                                            <---------AHL20(2)                                            --------->AHL20(2)                                --------->ARR14(3)                                <-----------ARR10                                <---------ARR14(2)                                --------->ARR14(2)                                --------->ARR11(3)                                                  -                                <---------ARR11(3)                                                  -                 <---------TOE2(3)       <----------DOF2                                        -----    ------>ZmHOX2a(2)           <---------ARR14(3)          <---------AtMYB61                   -----   <---------GLK1(1)           --------->GLK1(1)          <---------ANAC46                      -----   <------ZmHOX2a(2)           <---------GLK1(1)<---------AHL20(2)                              -----   --------->GLK1(1)          ----------->ARR10<-----------TBP                                  <----  <---------ARR11(3)   <------------CBF <---------DAG2    --------->ALFIN1                     <-----  <---------AGP1 <---------TOE1(2) <----------DOF2        <---------ANAC58                    <------  --------->ARR11(3) *TSS  <---------ANAC46--------->AHL20(2)<---------ANAC46             --------->AHL20(2) ----ZAT6        <---------TOE2(2)------>ZmHOX2a(2)       <---------ANAC58                <---------AHL20(2) --ANAC46      <---------MYB52(1)<------ZmHOX2a(2)     --------->ALFIN1<-----------GT1   --------->AHL20(2)   ttaagatctctctgtctcttaggtttattgtggagatctttgccttttaatttataggtggtgtggtatgaaatcacccttgtattctctatttaattac  21202700       <------------CBF    >>>>>>>>>>>>>>>>>LFY -------->ARR14(2) --------->TaMYB80                 <---------TOE2(3) ---->ANAC58                       <---------TOE1(3)                 ----------->GT1 ---->ANAC58                 <-------MYC3                 --------->REM1(1) ---->ANAC46                 ------->MYC3               ------>ZmHOX2a(1)                    -------- ---->ANAC55(2)     <---------AHL20(2)             <---------At4g35610     ---------->DOF2  <------ZmHOX2a(1) -----ANAC55(2)    --------->AHL20(1)           ---------->DOF2     <---------YAB1    --------->CCA1(2) ----LBD16         --------->AHL20(2)         <---------YAB1        <---------TOE2(3)<---------ARR11(3) -----GT1          <---------AHL20(2)      --------->GLK1(2)        <---------TOE1(3)--------->ARR11(3)   ggaatttgccattgtatgaaatttaatgacatgtgttagggtaagaatatgaaagctcctacaacggtttatggttataaagtcaaagatttaaggacct  21202800                                              <---------ICU4                                              --------->ATHB12          ---------->DOF2                    <---------YAB1   ----------->GT1                 --------->DAG2  ----------->GT1                 ---------->DOF2                 <----------DOF2 ->ARR11(3)--------->DAG2    ----------->RAV1(1)    <----------DOF2   tgggatgttaaaaaaagttgcacaatttgagcaacaaaaagtagttgatcattgccttaagtgtgagtcttttagttttaaaattcagtctgcaaaaaca  21202900                                                                         --------->STY1(2)                                                                      <---------MYB59                                                                     --------------->AGL15                                                                     <---------------AGL15                                                                    ----------------->AGL1                                                                    ----------------->AGL2                                    --------->AHL20(2)        <---------AHL20(2)                  <---------------AGL15                   <---------AHL20(2)                  --------------->AGL15                   --------->AHL20(1)                 <-----------------AGL2                   <---------AHL20(1)                 ====================================================================MADS_MADS                 ----------------->AGL2                   --------->AHL20(2)                 <-----------------AGL1        --------->ARR11(3)  <---------ZAT18                 <-----------------AGL3       --------->GLK1(1)    --------->ZAT18                 ----------------->AGL3       <---------GLK1(1)--------->ATHB12                 <-----------------AG        --------->ARR11(3)<---------ICU4          --------->AHL20(2)        <---------AHL20(2)   --------->AHL20(2)      <---------ARR14(2)          --------->YAB1 ----------->GT1     <---------ARR11(3)<---------AHL20(2)--------->ARR14(2)   gaaacatcacaatgaaattactacaaatggcaaaacatttatatcaagatatcatccaattttatttattgccctaactagcaaattttctgaaaaaatg  21203000                                                                                   <---------------AGL15                                                                                   --------------->AGL15                                                                                  ===================               ----------->GT1                    --------->AHL20(2)         <---------ICU4               <---------ANAC55(2) --------->AHL20(1)                       --------->AHL20(2)               <---------ANAC46    --------->AHL20(2)  <---------AHL20(1)   <---------AHL20(2) ------   --------->YAB1                  <---------AHL20(2)  --------->AHL20(1)   --------->AHL20(1) ------  <---------YAB1                  <---------AHL20(2)--------->YAB1 ----------->GT1<-----------------AGL1  <---------TOE2(3)               --------->AHL20(2)--------->AHL20(2)     --------->AHL20(2) ------>NtERF2 <-----------GT1      <---------AHL20(2)     ----------->GT1     ----------->GT1  <-----------------AGL3   gattaacataatttgttaagtgaaaaaattgatgaattaaattgaaatagaaaataatatttttcaagggtgaaaaaaaaaattacttcaaatggccacc  21203100  Previous    Next  AGI:  At1g56580.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G09310.1); similar to unknown [Populus trichocarpa] (GB:ABK94967.1); contains InterPro domain Protein of unknown function DUF538 (InterPro:IPR007493) Range:  from: 21201924    to: 21202621    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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