Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 <-----                                                                                             <-------                                                                                            ---------                                                       <---------YAB1                  --------->ANAC55(2)                                                   <---------AHL20(2)              --------->HSFB2a(1)                                                 <---------AHL20(2)                <---------HSFB2a(1)                                                 --------->AHL20(2)                <---------HSFC1(2)                                     <----------DOF2   <---------AHL20(2)          --------->HSFC1(2)                                    <---------ANAC58--------->AHL20(1)            <---------KAN4(2) <                        ----------->HVH21    --------->AHL20(2)      ---------->DOF2   --------->YAB1                       <-----------HVH21  <----------DOF2 <---------YAB1        <------ZmHOX2a(1) <--          <---------ALFIN1          <---------ANAC58<---------AHL20(1)        <---------TOE2(3)<-----   cttgtggtatcgacacatcaacaagggtgacctccaatgcttttcttttatatatatattattcatggataaaaagaattgaggaattttcgtaattttt  21111300                                                         --------->ANAC46                                                         --------->ANAC55(2)                                          <---------ARR11(3)                                          --------->ARR11(3)            <-----------------AGL3                          --------->AHL20(1)             --------->ANAC55(1)                          --------->AHL20(2)             --------->O2   ----------------->AGL3                          <---------AHL20(1)             --------->bZIP60(2)    ----------->GT1                          <---------AHL20(2) <---------AHL20(2)       <-----------GT1 ---------->DOF2 <---------ICU4           <---------AHL20(1)         --------->AHL20(2)    <--------- ----AHL20(2)    <---------AHL20(2)       <---------AHL20(2)      <---------AHL20(2)     --------->AHL20(2) --ICU4         --------->AHL20(2)        --------->AHL20(1)     <---------AHL20(2)      <---------AHL20(2) >ICU4        --------->YAB1   <---------AHL20(2)        --------->ANAC58<---------------AGL15 ---------AHL20(2)   <-------TEIL         --------->AHL20(2)     --------->AHL20(2)  --------->ICU4 -------YAB1 <---------YAB1   --------->AHL20(2)         --------->ANAC58--------------->AGL15 ----YAB1   --------->AHL20(2)<---------AHL20(2)      ------>ZmHOX2a(2) ----------------->AGL2   attaaaagcattgatataataaatacattttattaattttagaatatattatttgatccacgtaagattaatttactaaatgtagtaagaattaaacaac  21111400                                                     --------->TOE2(3)                                                   <---------YAB1                                                <----------DOF2                                               ------>ZmHOX2a(2)                    <---------ARR11(3)        <---------RVE1(1)                    --------->AHL20(1)        <------ZmHOX2a(2)                    <-----------ARR10        <-----------ARR10                    --------->ARR11(3)       <---------ARR14(2)                    <---------AHL20(1)       --------->ARR14(3)                   --------->RVE1(1)         --------->ARR11(3)              --------->TOE2(3)              <---------ARR11(3)       <---------DAG2                        --------->ARR14(2)     ------->TEIL  --------->CCA1(1)     ---------->DOF2                    <---------ANAC58 --------------->AtSPL8     <---------DAG2   <---------ARR14(3)       ---------->DOF2 <---------------AtSPL8     <----------DOF2 --------->RVE1(1)  --------->ZAT6                     --- --GT1 <----------DOF2--------->TOE2(3)--------->CCA1(2)<-----------GT1     <---------ANAC58     ----   ttaaatgtacttttcatcttaatatcttagctttatgggagataaaagatcttttcattaactttccactacaaaagtacttgcacaaaaaaaaaaaaaa  21111500                                                      <---------TOE2(3)               --------->ARR11(3)          ----------->RAV1(1)                          --------->ARR11(3)          ---------->DOF2  <---------AHL20(2)      <---------YAB1                       <---------ARR11(3)   <---------ANAC58        --------->AHL20(2)  <---------At4g35610           --------------->AGL15   <---------ANAC58      --------->CCA1(2)--------->ANAC46             <---------ANAC58 --------->AHL20(1) --------->ARR11(3)     --------->ARR11(3)----------->HVH21            <---------ANAC58--------->CCA1(2) <---------ARR11(3)     <---------ARR11(3)<---------ETT(1)            <---------At4g35610 ------>DAG2  <------ZmHOX2a(1)        <---------ARR14(2)           <---------CCA1(2) <---------ARR11(3) ------>DOF2<---------TOE2(3)          --------->ARR14(2)        ------>ZmHOX2a(1)    --------->ARR11(3)   aaagttcttgcacaaaggattttgtagatataaatagttcaaatccgacagctattatggaaatgtccttgtagcttctcttgatatagatatattccaa  21111600                                    <---------At4g35610                                    --------->At4g35610                               --------->WOX13(1)                             ------------>CBF                            --------->ANAC58                            --------->ANAC58                        --------->ANAC58              --------->YAB1                        --------->ANAC55(2)           ----------->GT1                        --------->ANAC46             --------->ICU4                        --------->ANAC58  <---------DAG2                              <---------WOX13(1)                        --------->ANAC55(1)          *TSS                            >>>>>>>>>ARR1                       <---------LBD16    <----------DOF2                           --------->ATHB12                  <---------MYB52(1)----------->RAV1(2)                             --------->YAB1                <---------ANAC58  --------->YAB1     <---------ATHB12              <---------YAB1  <-                <---------ANAC58 <---------ATHB12------------>CBF            <---------CCA1(2)     <-       --------->YAB1<---------REM1(2)----------->HVH21               --------->ZAT14>>>>>>>>>ARR2 <-   actcttctatcacatcttccgttttcacggaagcaatcatctgacttttttagcaatggtgaaactagactctaaactcatctctatgattgttttcggt  21111700                                 <------ZmHOX2a(1)   --------->REM1(1)                        --------->ARR11(3)          <-------TEIL                       --------->YAB1               --------->ZAT2 <---------HSFB2a(2)<---------At4g35610             --------->HSFB2a(2) --------ANAC58<---------At4g35610             <--------P <-----------GT1        <---------HSFB2a(2) --------ANAC46<---------ZAT2 --------->HSFB2a(2)--------->At4g35610       <---------ANAC58 --------ANAC58--------->At4g35610           <---------MYB46(3)            <---------ANAC58   atcgtggtaatcgtctctgctgaagttatcttcgaggagcgattcgatggtagctacattttccctctctgtctatttcttatctagaatattaatctaa  21111800                                                                              <-----------GT1                         <---------YAB1         <---------MYB52(1)     <---------WOX13(1)             <---------WOX13(1)  <---------MYB52(1)   <-------TEIL   --------->ATHB12       ---------           --------->ATHB12    <---------YAB1 <---------ANAC46      <---------YAB1----------->GT1 ---   gtgccaatgccatcgattgatggttttatgattctgtttgtgaatgctacgttgagttcatttggataagatgattgatataacttgttaatccatgcta  21111900                                                              <---------GLK1(1)                                                      ------>ZmHOX2a(2)                                                     ==============HOX2a_HOX2a                                                     <------ZmHOX2a(2)                                                    <---------AGP1                                                    --------->AGP1        ----------->GT1                                              <---------YAB1 --------->ARR14(2)      <---------AHL20(2)                                          >>>>>>>>>ARR1      <---------ARR14(2)     <---------AHL20(2)                                          >>>>>>>>>ARR2<----------DOF2   <---------TOE2(3)                      <----------DOF2   <---------TOE2(3)   <------ZmHOX2a(1)   <---------DAG2<------           <---------AHL20(2)       <---------ANAC58--------->ARR11(3)   <---------YAB1       <------ >AtLEC2   --------->AHL20(2)       <---------ANAC58<---------ARR11(3)   <---------TOE1(3)   <------- ------>YAB1      <---------At4g35610   <---------YAB1=============HOX2a_HOX2a  <----------DOF2   <--   tcttcatttcagtttaatttagctctttcaacatgtttgcttaagattgttatagatctttaggatttgtggattatggttacttttttattttttgcgg  21112000                                                            --------->ANAC58                                                            --------->ANAC46                                                            --------->ANAC58                                                      --------->ANAC55(2)                                                      <---------ANAC58                                                      <---------ANAC46                      --------->ARR14(2)              <---------ANAC55(2)                      --------->ARR11(3)              <---------ANAC55(1)           --------->ANAC46      <---------YAB1       <---------ANAC58          <---------LBD16        --------->ICU4   <---------ANAC58 ---RAP2.6(2)         <---------ARR11(3)       <---------WOX13(1)                  ----------->GT1 ---RAP2.3(2)         <---------ARR14(2)     --------->ATHB12                      --------->YAB1 --LBD16--------->MYB46(3)      <---------TOE2(3) <---------ANAC58    <---------ZAT14 --------DOF2         <---------GLK1(2)     <---------YAB1 <---------HSFB2a(2)    <---------YAB1   cttttgtgaaaccacgggattacagattttcgataatgtttagtatgtgattgcttacgtgctcgaaactagtatagttcttatatgataaaaaccttga  21112100                                                                 --------->YAB1                                                              --------->YAB1                                                             <---------YAB1                                                           --------->ATHB51                                                           -------->HAHB4                                                           <---------AHL20(2)                                                           -------->ATHB1                                                           <---------ICU4                                                           <--------HAHB4                                                          <---------ATHB12                                                          <---------ATHB51                                                          <---------YAB1                          ----------->HVH21        --------->ZAT14                       --------->TOE1(2)           <---------ZAT14                      --------->ANAC55(2)       ----------->GT1 <---------YAB1                      <---------ANAC55(2) ------>ZmHOX2a(2)--------->YAB1 <---------YAB1            --------->ANAC46            --------->ARR11(3)--------->ICU4<----------DOF2     <--------   gtttattatgtcatacacaatagtacgtatgacacaagttttgatctaggtagtaaactaattattatgatatactttcattgttgtgagttattttttt  21112200  Previous    Next  AGI:  At1g56390.1    Description:  pseudogene, calreticulin, similar to calreticulin GI:2052379 (Arabidopsis thaliana); blastp match of 85% identity and 8.6e-110 P-value to SP|Q40401|CRTC_NICPL Calreticulin precursor. (Leadwort-leaved tobacco) {Nicotiana plumbaginifolia} Range:  from: 21111653    to: 21114417    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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