Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            --------->CCA1(2)                          --------->ATHB12                              --------->ANAC46                                      <---------YAB1                          <------ZmHOX2a(1)             <---------GLK1(1)      <---------TOE1(2)                --------->CCA1(2)        --------->ARR11(3)                ----------->HVH21   <----------DOF2    ---------->DOF2    <---------ARR11(3)    --------->GLK1(1)   <-------TEIL  ----   tccatctttagaacatggatacaacaaaggacacagaacaatagatatatcagacgagaaatcggaattcaaaacttctcacaggtacgattgcaaatga  21095900                                                             <---------ANAC58                                                             <---------ANAC58                                                             --------->ANAC55(2)                                                             <---------ANAC46                                                       <---------AHL20(1)                                                       <---------AHL20(2)                                                       --------->AHL20(2)  --------->ANAC46                                                 ----------->GT1           --------->ANAC58                                                 --------->ANAC58          --------->ANAC58                                                 --------->ANAC55(1)      --------->SPL7            <                                  <---------YAB1 --------->ANAC55(2)      ------->TEIL              <                          --------->ANAC58   --------->ANAC58----------->GT1   ----------->RAV1(1)  <                          --------->ANAC58   --------->ANAC58<---------ANAC55(2)     --------->GLK1(2)                  --------->KAN4(2)         --------->WOX13(1)  <---------ICU4 ------>NtERF2 ------>NtERF2           <---------ANAC58     --------->YAB1   --------->ANAC46      --------->ANAC46     ---------           <---------ANAC58  --------->WOX13(1)  --------->ANAC58      --------->ANAC58   <---------At4g35610 ----->CCA1(2)  <---------YAB1 <---------ATHB12  <---------ANAC55(2)   --------->ANAC58  --------->MYB52(1)   tatggattcaaaggcttgatcattcgataagcaatcatactagtatcaagcacgtaaaaaatttcgtaattacacgaacgccaacacaatctagcggcca  21096000                                                                                  --------->YAB1                                                                                  <---------ICU4                                                                                 <<<<<<<<<ARR1                                                                                 <<<<<<<<<ARR2                                                                                 <---------ATHB12                                                                            --------->YAB1      ------>ZmHOX2a(2)                                                 ------>ZmHOX2a(2) <---------WOX13(1)                                           --------->GLK1(2)--------->WOX13(1) <----------DOF2                                     --------->GLK1(2) <------ZmHOX2a(2) ---------ANAC58                                  --------->LBD16     <---------AGP1 ---------ANAC46   <---------GLK1(2)          <---------ARR14(2)      --------->AGP1 --------->MYB52(1) ---------ANAC58--------->YAB1         ---------->DOF2 ----------->GT1<---------ARR11(3)       ------ >RAP2.6(2)    <------ZmHOX2a(2)      --------->YAB1<---------GLK1(2) --------->ARR11(3)       ------   ttgcttgatcgtcatcgatcagaatttcgaaatcgaagaatcaaagtaaatccagaatcgaaaaattctatagatctataacaatcataacgatatcaag  21096100                                                                      --------->CCA1(2) --->ANAC58                              ------->TEIL         <---------GLK1(2)                   --- --->ANAC58                 --------->YAB1    <------ZmHOX2a(2)--------->GLK1(2)                  ---   aaaatttcatcgaattgatcacaaatggaatcataaaacaatgcatcgatcaaattgaaactaagaatctagataagagattgagagagaaatgtagata  21096200                           <---------ZAT2                           <---------At4g35610                           --------->At4g35610            ================================HOX2a_HOX2a            ------>ZmHOX2a(1)                       ---------->DOF2            <---------HSFB2a(2)                  <----------ID1            <---------TOE1(3)            --------->HSFB2a(2)            --------->ANAC46           ------->TEIL ------>TOE1(2)            --------->ZAT2  --------->O2          --------->CCA1(2) ------>TOE2(2)   <---------ARR11(3) <------ZmHOX2a(2)      ---------->DOF2<---------TOE2(3)   ccttcgaatttctcctcgaagataacttcagcagagacgatcaccacgagagcgaaaagaatcaaagagatgaatttagggtttagtttcgccattgcta  21096300                                                                                  <---------ANAC46                                                                                  <---------ANAC58                                                                                  =============MYC_MYB                                                                                  <---------ANAC58                                                                                  --------->O2                                                                                  <---------O2                                                                                  --------->TGA1a                                                                                  <---------bZIP60(2)                                                                                  <---------TGA1a                                                                                <---------TGA2(2)                                                                               ----------->HVH21                                                                               ----------->TGA1                                                                             <---------At4g35610                                                                             --------->ZAT2       <--                    --------->ANAC58                                         <---------ZAT2    ------                    --------->ANAC46                                       =================MYC_MYB                    --------->ANAC58                                       <--------P         -------            <---------At4g35610                                         --------->ALFIN1      <------            --------->ZAT2                                <---------MYB46(3) ----------->bZIP910(2)            --------->At4g35610                           --------->MYB111(1)--------->At4g35610-----        ------>ZmHOX2a(2)                    --------->AHL20(1)       <---------bZIP60(2)  <---------TOE2(3)       <------ZmHOX2a(2)                     --------->ARR11(3)       <---------ANAC46 <-------GAMYB      <---------ARR14(2)    ---------->DOF2  <---------ARR11(3)     <---------ZAT14  <---------TOE2(2)      --------->ARR14(2) *TSS               --------->AHL20(2)      --------->ZAT14 --------->ALFIN1-   aaaactcagatcggagcttcacacgaaaacaaaagagtttttgaaaatatataccgagagtagttgcaagtgaagtggtagctgacgtgggttaatgatc  21096400                                                                  --------->ALFIN1                                                                --------->O2                                                                <---------ANAC55(2)                                                                --------->ANAC55(2)                                                                <---------ANAC58                                                           <---------ICU4                                                <---------ANAC55(1)                                                <---------ANAC46--------->bZIP60(1)                                                --------->ANAC55(2)                                                <---------ANAC58<---------O2                                            --------->GLK1(1)   <---------ANAC58        <---------CCA1(2)    --------->AHL20(2) <---------AtLEC2<---------ANAC46      --------->AHL20(2)     <---------AHL20(2) <---------ANAC58<---------bZIP60(1)      <---------AHL20(2)  ----------->GT1   <---------GLK1(1)   --------->TGA1a    <-----------TBP   --------->WOX13(1)    --------->CCA1(2)   <---------bZIP60(2)   <---------ICU4   ------------>CBF       <---------GLK1(2)    <---------TGA1a  --------->ICU4  <---------DOF5.7(2)      <---------ARR14(2)  ----------->STF1 ---------HVH21 --------->DOF5.7(2)        --------->ARR14(2)----------->TGA1                  <----- --->At4g35610 --------->TOE2(3)         ----------->ARR10 --------->YAB1                      ------ -->ARR11(3)   --------->TOE1(3)     --------->ANAC55(1)  --------->ICU4                       ------ ---ARR11(3)  --------->ANAC58       --------->ANAC46   --------->YAB1           --------->ZAT14 ->ZmHOX2a(2) --------->ANAC58       --------->ANAC58  <---------YAB1      <-----------HVH21--------- -------->YAB1--------->ANAC46       --------->ANAC58  --------->ICU4<---------ANAC46       ---------   tgtcatatttatatccacgttaaccaattagttaaatacacgccagatttgcgtgtcatgataatgacgtggctgatggtcactggacaaaaccacgaat  21096500                                     --------->ZAT14                                     ---------->DOF2                                     <---------ZAT14                                  ----------->GT1                           <-------MYC2                                    <----------DOF2                           ------->MYC2                                    <---------DAG2                           <-------MYC3                              <-------TEIL                           ------->MYC3                            --------->ARR14(2)                           <-----------HVH21                       <---------GLK1(2)                          --------->O2                             <---------ARR14(2)                          <---------ANAC55(2)  <------NtERF2      --------->At4g35610                          <---------TGA1a      --------->ALFIN1   <---------At4g35610                          --------->ANAC46   <---------ANAC58    ----------->ARR10 ----ARR14(2)             ======================bZIP_DOF       <------NtERF2 --->ARR14(2)             --------->ANAC55(2)<---------ANAC58  <---------MYB52(1) ->TEIL                   --------->TGA1a    <---------ANAC46 <-----------HVH21                     < >ANAC58                  <---------O2--------->DAG2          <---------RAP2.6(3)                   - >ANAC58               <---------REM1(2) --------->ALFIN1    --------->ANAC46                   <----   ttggagtcgaatgagcgcatgagtttacacgtgagagagtaaagtgggcgtgggtaatagtagccgtcagattcgaacttttttttttttatctacaaaa  21096600               --------->ATHB12           <---------AHL20(2)           --------->AHL20(2)          <---------AHL20(2)       --------->AHL20(2)       <---------AHL20(2)                                              <---------MYB52(1)       <----      <---------AHL20(2)                                         <---------GLK1(1)     <---------ZAT14 ----------DOF2<---------AHL20(2)                                --------->GLK1(1)     --------->ZAT14 ----->ZmHOX2a(1)          <---------YAB1                  --------->MYB52(1)     --------->KAN4(2)<- -----ARR11(3)<---------AHL20(2)           --------->ZAT6<----------DOF2 <---------MYB46(3)----------   tccttttatttatttatttattgagagtcttgatagtttttcttaagactattgaagggcttaactgatttccattggtttgtttattcttcactgacct  21096700                                                                               <---------ANAC46                                                                       <---------At4g35610       ------->GAMYB                                                   --------->At4g35610      --------->MYB46(3)                                               --------->ZAT14      <---------MYB52(2)                                            --------->At4g35610 ------DOF2          ----------->HVH21      --------->YAB1          <---------At4g35610 ----------HVH21   ----------->GT1         <---------YAB1       <---------MYB46(3) ->HVH21  --------->YAB1          ---------->DOF2               <-----------RAV1(1)   ttgtcacaacaaacataaaactggtgacaatgaaacaaaagaaaaatcatagaagcctagcacaagttgttgctgcagacttcgtatgagaaacacattg  21096800  Previous    Next  AGI:  At1g56340.1    Description:  CRT1 (CALRETICULIN 1); calcium ion binding. Identical to Calreticulin-1 precursor (CRT1) [Arabidopsis Thaliana] (GB:O04151); similar to calreticulin 2 (CRT2) [Arabidopsis thaliana] (TAIR:AT1G09210.1); similar to Calreticulin precursor (GB:P93508); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580); contains InterPro domain Concanavalin A-like lectin/glucanase (InterPro:IPR008985); contains InterPro domain Calreticulin; (InterPro:IPR009169) Range:  from: 21093509    to: 21096325    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g56345.1    Description:  pseudouridine synthase family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO17441.1); contains InterPro domain Pseudouridine synthase; (InterPro:IPR006145) Range:  from: 21096658    to: 21098126    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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