Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   <------NtERF2                                                                               <---------ANAC58                                                                               <---------O2                                       <------NtERF2                           <---------ANAC46                                      ------>NtERF2                            --------->bZIP60(1)                                     <---------PCF2                            <---------bZIP60(1)                                   <---------MYB46(3)                          <---------ANAC58                                  --------->ALFIN1                             <---------bZIP60(2)                                  <---------DEAR3(1)                      --------->LBD16                                  <---------AtMYB61                      --------->LBD16            -                               <---------AtMYB61                        <---------LBD16            --                               --------->ALFIN1               ---------->DOF2 <------NtERF2        --               <-----------HVH21<---------MYB46(3)         --------->ANAC58  <-----------HVH21     --            --------->ICU4     <---------DEAR3(1)          --------->ANAC58 --------->ALFIN1      >>>      <------ZmHOX2a(1)      <---------ZAT2       --------->ARR11(3) <----------DOF2          -------   <-----------RAV1(2)   <---------ALFIN1        <---------GLK1(1)  <---------ANAC58          ------- -->ALFIN1  <---------YAB1 <-----------RAV1(2)   <---------At4g35610<---------ANAC58       <---------REM1(1)   gagtagcaggagtcatgagtcacatctccacaggtggtggtgccagtttggagctcttggaaggcaaagtgcttcccggtgtcgtcgctcttgatgaagc  21034100                                            <---------ATERF1(1)                                            --------->ATERF1(1)                                    ----------->HVH21 ------>GAMYB                     ----------->RAV1(2)                                           <---- ------->ANAC46                   --------->At4g35610                                          <----- ------->ANAC58                   <---------At4g35610                            --------->WOX13(1) ------->ANAC58            <---------ICU4  --------->PCF2                  <-------GAMYB   <--------- >>>>>>MYB2              <----------DOF2   <---------TCP15(1)             <-----------RAV1(1)  ------ -->ANAC58          <---------ARR11(3)    <---------PCF5            <---------YAB1   ---------->DOF2 -->ANAC58    <-----------GT1 <-----------GT1                  <<<<<<<<<TBF1 ----------->GT1 <-------   aacgccagtcactgtttaacaacatctctttattacacctgaagggacccccctaaatgagtttcttcttcttattctgttgtaaatcaaagtctttgtt  21034200                                                                                                    <                                                                                               ------                                                                                               ------                                                                                              <------                                                                                              ------- -----REM1(1)                                                                            <---------At4g35610 ----------AtSPL8                 ---------->ID1      ----------->GT1                    --------->At4g35610 -DOF2                      <----------DOF2    --------->AHL20(2)                     <---------ATHB12 --------->AtSPL8   --------->ALFIN1      --------->AHL20(2)     <---------MYB52(1) --------->WOX13(1) ----RAV1(1)       <------ZmHOX2a(1)      <---------AHL20(2)  <-------TEIL       --------->TOE2(3)  -   gtaccatcaaatccatagagaggagggactctttttgtctcaaataaaatcaaatacagtgacattcgttattttgagcaaaacatcaatcaactgctcg  21034300                                                                                               <-----                                                                                               <-----                                                                                           <-------PIF4                                                                                           <-------MYC3                                                                                           ------->PIF4                                                                                           ------->PIF5                                                                                           <-------MYC4                                                                                           <-------PIF5                                                                                           ------->MYC2                                                                                           ------->MYC3                                                                                          ===========                                                                                          --------->PIF3(3)                                                                                          <---------TGA1a                                                                                          <---------PIF3(3)                                                                                          --------->O2                                                                  <----------ID1          <---------O2          --------->TOE1(3)                       --------->TOE1(2)                       --------->TGA1a          --------->TOE2(3)                       --------->ARR14(2)                     <---------TOE1(2)       <-----------GT1              --------->AHL20(2)            --------->ANAC58      <---------ALFIN1 <---------ICU4                     <---------AHL20(2)       --------->ANAC58      --------->KAN4(2) ---------ATHB12                    --------->AHL20(1)       --------->ANAC58    --------->ICU4<----- --->ANAC58                         <---------AHL20(1)   <------ZmHOX2a(1)  ----------->GT1<-------MYC2 --->ANAC58                        <---------AHL20(2)<---------TOE2(1)    <------ZmHOX2a(1)------->MYC4 ---HSFB2a(2)                ------>ZmHOX2a(1)    <---------ARR14(2)  ---------->DOF2   <------------OsbHLH66 -->HSFB2a(2)               --------->TOE2(3)  --------->AHL20(2) --------->ANAC58<---------ICU4 <--- -------->ICU4         <-------TEIL--------->AHL20(2)<---------TOE1(1)==============================bZIP_DOF   aaatcattttaaccttgagaatagtttcatcctcaaaataaattttcaagaaaatacgaggactcgaaacgaaaaaggatgtaaatattcccacgtgccg  21034400        --------->At4g35610    <------------CBF   --------->ATHB51   <---------ICU4   --------->ATHB12                     --------->At4g35610  --------->ICU4                        ----------->GT1  <---------YAB1                        --------->ZAT2 ----ANAC58                             <---------At4g35610      <---------TOE2(3)                --- ----ANAC58                         --------->ANAC46   <<<<<<<<<GATA-1                           ---- ================================bZIP_DOF ----------->HVH21 --------->ZAT6                      <---- ----ANAC46<------NtERF2           <---------LBD16    <-----------GT1                          ------ ------MYB52(1)       ---------->DOF2 <-----------RAV1(2)  *TSS ---------->DOF2       ------>ZmHOX2a(1)   tttcattattggctgcaagttgccaaaagtatacatacgcgcaggtgaaatggatttatctatctctaaagttgttccttcttctctccttcgtctcccg  21034500                                  <-----------GT1                            <------NtERF2                           ------>NtERF2                          <---------ANAC46                          --------->DEAR3(1)                         --------->ATERF1(1)                         --------->RAP2.3(1)                         <------NtERF2                         --------->DEAR4(2)                        <---------ERF1                        <---------RAP2.3(1)                        <---------RRTF1(1)                        <---------ORA47(2)                        <---------ATERF1(1)                                      <----------DOF2                        <---------RAP2.6(1)                                  <----------DOF2                        ------>NtERF2                                     --------->ANAC58                       <---------DEAR3(1)                                 --------->ANAC58      <----------DOF2  <---------RAP2.3(3)                               <---------ZAT18 <---------At4g35610   <---------DREB2C(2)                             <---------SPL7 <---------ZAT2        <---------RAP2.3(2)                            ------->GAMYB ------->DOF2          <---------RRTF1(3)              ------>ZmHOX2a(1) --------->SPL7 ----->WRKY18(1)       <---------RAP2.6(2)      <---------At4g35610  --------------->AtSPL3 -------HVH21          <---------RRTF1(2)       --------->At4g35610--------->MYB52(1) --->ANAC46            <---------ANAC46 <---------ATHB12          --------->MYB46(3)            -----   tcaagctgctttagccatggctatggcggcgtctattatccaatcttctccgctctccttcaatagcaacaacggtacgctttctttctcactctattag  21034600                                             <-----------GT1                                  <---------ANAC46             ------>ZmHOX2a(1)    <---------ANAC55(2)         <-----------GT1          <---------ANAC55(1)                    --------->YAB1  <---------WOX13(1)     <---------ARR14(2)           <---------ANAC58--------->STY1(1) ----------->GT1    --------->ATHB12     --------->ARR14(2)           --------->ANAC55(2)        <---------TOE2(3)   <------MYB83  <---------ANAC46                <---------ANAC58<---------STY1(1)<---------TOE2(3)  <---------YAB1 ---->At4g35610      ----------------------->TaNAC69(2)     ---------->DOF2      <------MYB46(1)    <   ctcgccgtatatttccttatgctctggctctgggttacgtttttttttatccctagggattttaaagatgaggtatcaaaatttggtgttgattgaaact  21034700                                                                                             --------                                                                   --------->YAB1        <------NtERF2                                                                  <-------TEIL        <---------LBD16                                                                <---------ARR14(2)    <------NtERF2                                                                --------->ARR14(2)    --------->At4g35610                                                             --------->ANAC58       ---------->CDC5                                     <---------DAG2          --------->ANAC58       <---------DEAR3(1)      <---------ATHB12               <----------DOF2        <---------LBD16     ------>ZmHOX2a(2)      <------ZmHOX2a(2)           ------>MYB83          --------->ANAC58      <---------ARR14(2) ---- <---------At5g28300              ------>MYB46(1)       --------->ANAC58      --------->ARR14(2) ---- -----------GT1          <---------ZAT6               ---------->DOF2        <------ZmHOX2a(1) ------   ttttaccgatcattttttggaccaagagtgtaaacctagctttttgtttgatatagcaaagccacggattcatagttcaggatcgctcggcggaatcaaa  21034800                              <------MYB83                              <------MYB46(1)                            <--------P                           <-------GAMYB                          <---------MYB46(3)                        <---------ZAT14                        --------->ZAT18                        <---------ZAT18                       --------->ALFIN1 ->YAB1 <---------GLK1(2)<---------RAP2.6(2)                                <-----------HVH21 ----->ANAC58        <---------ANAC46                              <----------DOF2 ----->ANAC58        <---------ANAC58<---------At4g35610     <---------GLK1(1)                    <-- ---->DOF2           <---------ANAC58--------->At4g35610     --------->GLK1(1) --------->WOX13(1) ---   agccaaaatagagtctctccattgagtgcggttggattaagctcaggccttggaagtagaaggaaatctcttttgatatgtcactcagccattgttagtc  21034900                                   <---------ZAT14                                  <----------DOF2         --------->TGA1a         <---------ANAC58       --------->YAB1         <---------TGA1a         <---------ANAC58   --------->ATHB12         <---------O2        --------->GLK1(1)     <---------YAB1         --------->O2        <---------GLK1(1) <---------DAG2         ====================================bZIP_DOF <---------WOX13(1)         ====================================bZIP_DOF--------------------->WRI1     <---------ARR11(3)  <-----------GT1           <---------ARR14(2) <----------DOF2                      --------->ARR11(3) -------At4g35610           --------->ARR14(2)<---------ANAC58                     --------->YAB1 ------>At4g35610    --------->ATHB12         <---------ANAC58      --------->ZAT6--------->ICU4   <-   atcttaacctcacatgtctctatggattgggatttgcttcactgaattgctttttcattgataacatctatctctaattgcaaaatgatcatcttgttct  21035000  Previous    Next  AGI:  At1g56190.1    Description:  phosphoglycerate kinase, putative. Identical to Phosphoglycerate kinase, chloroplast precursor [Arabidopsis Thaliana] (GB:P50318;GB:Q9SGU6); similar to PGK1 (PHOSPHOGLYCERATE KINASE 1), phosphoglycerate kinase [Arabidopsis thaliana] (TAIR:AT3G12780.1); similar to Phosphoglycerate kinase, chloroplast precursor (GB:Q42961); similar to hypothetical protein [Vitis vinifera] (GB:CAN81990.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96267.1); contains InterPro domain Phosphoglycerate kinase, conserved site; (InterPro:IPR015911); contains InterPro domain Phosphoglycerate kinase; (InterPro:IPR001576); contains InterPro dom Range:  from: 21031903    to: 21034314    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g56200.1    Description:  EMB1303 (EMBRYO DEFECTIVE 1303). similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G30475.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G30475.3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G30475.1) Range:  from: 21034459    to: 21035743    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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