Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        <----------DOF2                                    --------->At4g35610                                   --------->RAP2.6(2)                                --------->ANAC58                                --------->ANAC58                                --------->ANAC46             <-------TEIL                         <---------GLK1(1)        ----------->HVH21                         --------->GLK1(1)       --------->LBD16                   <---------ICU4      <---------ARR14(2) --------->At4g35610    <---------ANAC58         --------->ANAC46           <     --------->WOX13(1) <---------ARR11(3)      <---------ANAC58  ------->GAMYB   <---------YAB1-----   aacttgccaatccctctccaattcaagagctcccaagccgcttaacttagccgtgacaatagattcaaccgaatcacgctgttcatcattttcaatagat  21031500                          <----------DOF2                         ------>ZmHOX2a(2)                        <------ZmHOX2a(2)                        <---------RVE1(1)                       <---------ARR14(3)                       --------->AGP1                       <---------ARR14(2)                       --------->ARR14(2)                       <---------ARR11(3)                       --------->ARR14(3)                                         --------->LBD16   -                  <------NtERF2                                                  --------->ANAC46   -                 --------->LBD16                       ------>NtERF2 <---------ZAT18                -                <---------DEAR3(1)   --------->ANAC46  --------->LBD16           --------->ANAC58<---                --------->DEAR3(1)<---------ZAT14     --------->ANAC46           --------->ANAC58----    --------->GLK1(2)  --------->ARR11(3)<---------ARR11(3)          <---------ZAT14            <----  =============================HOX2a_HOX2a            --------->ANAC58          <---------LBD16 -----  ==============================HOX2a_HOX2a           --------->ANAC58      ------>NtERF2      <-----  <------ZmHOX2a(1)  ----------->ARR10  <---------GLK1(2)     <---------LBD16  <---------ATERF1(1) -- ---------TOE2(3)------>NtERF2    <---------REM1(2)  <---------LBD16 --------->ZAT18        <-------- ---->CCA1(2)  <---------LBD16    --------->ZAT14--------->SPL7      --------->ZAT14        <--------   ttgaggaatctaagagccccggcgagatcttttctcttcacagcatcttcgtactcccgccattccctgagtgcgctcggcctccgcaactcatgcttcc  21031600                                                                          ------>ZmHOX2a(2)                                                                          ====================HOX2a_HOX2a                                                                         --------->CCA1(2) -------->ANAC58                                                         =====================HOX2a_HOX2a -------->ANAC46                   --------->ANAC58                      <------ZmHOX2a(2) -------->ANAC58                   --------->ANAC58                     --------->ARR11(3) ------SPL7                 --------->ALFIN1                            --------->AGP1 ----->LBD16               <-------MYC3                                 --------->ARR14(2) -----HSFB2a(2)            ------->MYC3           <---------ANAC46      <---------AGP1 ---->HSFB2a(2)            --------->LBD16        <---------ANAC58      <---------ARR11(3) ----LBD16                <---------ANAC46        <---------ANAC58      <---------ARR14(2)  --------- ------->SPL7        <---------ZAT14   --------->ANAC58                <---------GLK1(1)   ---------- -ANAC58             --------->ZAT14   --------->ANAC58           ---------->DOF2      <------ZmHOX2a(1) -ANAC58             <---------SPL7--------->ANAC46     ---------->DOF2--------->GLK1(1)  --------->ATERF1(1)   ggacgctaccaaagactagagactgtacgcgtggaacaaggaagccaatttggcgagaaaaagaaggcgaaagagatctgagacatggaggagacgacgg  21031700                              --------->GLK1(1)                              <---------GLK1(1)                             *TSS                           <------NtERF2                          --------->LBD16                          ------>NtERF2                         <---------LBD16   --------->ANAC58      --------->LBD16   --------->ANAC58     <---------LBD16            <---------ANAC46  --------->DAG2 <---------ANAC58       --------->AHL20(1)                   --------->ATHB12 ---------->DOF2 <---------ANAC58       --------->AHL20(2)                  <-------TEIL  ---------->DOF2 >MYB52(1)      <-------TEIL --------->ARR14(2) --------->ANAC46   <------ZmHOX2a(1)  <------NtERF2 ->HVH21       --------->ALFIN1         <---------AHL20(2)     ---------->DOF2<------------CBF   agataaagccattagaggtgcttctcgccgggatttccaaaataaaataaacgacgtttatattcgaaaggacagaaattcattgggccgagtaaagccc  21031800                                                                                   <----------DOF2                                                                     <---------ARR14(2)                                                                     --------->ARR14(2)                                                                  <---------------AGL15                                             --------->AHL20(2)   --------------->AGL15                                             <---------AHL20(2)  <-----------------AG                                         <---------YAB1          <-----------------AGL3                                        <---------AHL20(1)       ----------------->AGL3                                        --------->AHL20(1)       ----------------->AGL1             <------------CBF           --------->AHL20(2)       ----------------->AG            <---------ICU4              <---------AHL20(2)       ----------------->AGL2      --------        --------->AHL20(2)     <-----------GT1 <---------YAB1    <-----------------AGL2    --------->YAB1        <---------AHL20(2)    <---------AHL20(2)                 <-----------------AGL1   <------ZmHOX2a(2)      <-----------TBP  ----------->GT1 --------->AHL20(2)    <----------DOF2       <---------DAG2   atttagctatttaaatattgcaaatgagttatttaacttcattatatttatttttagagttgtcttttccatatatggaagtaaacttttcgatcaaaag  21031900     <----------DOF2    ------>ZmHOX2a(2)   <---------YAB1  <---------WRKY38(1)                --------->YAB1   *TSS        --------->ALFIN1<---------At4g35610   <---------YAB1                                <-  <---------ARR11(3)           --------->At4g35610 --------->YAB1                                  --  --------->ARR11(3)  --------->ICU4               <---------ICU4          <----------ID1    -------- -->DOF2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)     --------->ICU4       --------->YAB1--------->TOE2(3)   acatgatctttgtgaatgtgggcaacgattgtaagcagagggaaggcgaagaattatgataacctctcatcaacgataagacaaaatccataaactagta  21032000                                                                                   <------------AtMYB77                                                                                  <---------At4g35610                                                                                  --------->At4g35610                                                                               --------->LBD16                                                                               ------>NtERF2                                                                               <------NtERF2                                                                              --------->DEAR3(1)                                                                              --------->ANAC58                                                                              --------->RRTF1(3)                                                                              --------->RRTF1(2)                                                                              --------->RAP2.3(3)                                                                              --------->RAP2.6(2)                                                                              --------->RAP2.3(2)                                                                              --------->ANAC58                                                                              --------->ANAC46                                                                             --------->RAP2.3(1)                                                                             --------->RRTF1(1)                                                                            ------>NtERF2                                                                            --------->ABI4(1)                                                                            <---------ATERF1(1)                                                                           <---------ALFIN1                                                                           --------->DEAR3(1)                                                                           --------->DREB2C(2)                                                                           --------->AtMYB61                                                                           ------->GAMYB                                                                    <---------ANAC58    <---------At4g35610       --------->ARR14(2)                                           <---------ANAC58------->GAMYB       <---------ARR14(2)           <----------DOF2            <---------O2--------->ANAC46        -- --------ARR11(3)       ------>ZmHOX2a(1)              --------->WRKY38(1)--------->MYB46(3)      <-- ------->ARR11(3)      --------->TOE2(3)             --------->At4g35610  --------->DEAR3(2)<-------- --->GT1   ------>ZmHOX2a(1)     <---------ALFIN1   <-----------RAV1(1) <---------ALFIN1--------->At4g35610   atatcatccaatcctctcacttcttccttattccctcactttcactctcactatctgttgacttcacatggcttccaccgccgcaactgcagctctttcg  21032100                         <---------MYB52(1)                      <------NtERF2                      --------->RAP2.3(1)                     --------->ABI4(1)                     ------>NtERF2                    --------->RAP2.3(3)                    --------->RRTF1(2)                    <---------DEAR3(1)                    --------->RAP2.3(2)                    --------->RRTF1(3)                    --------->DEAR3(1)                   --------->ORA47(2)                   --------->DEAR4(2)                   --------->RAP2.6(1)                   --------->ATERF1(1)                   <------NtERF2                   <---------ABI4(2)                   --------->RRTF1(1)                   --------->ERF1                   --------->DEAR3(2)                   --------->RAP2.3(1)                  ------>NtERF2                  <---------DEAR4(2)                  <---------RAP2.6(1)                  <---------RRTF1(1)                  <---------ATERF1(1)                  <---------ERF1                  <---------RAP2.3(1)                  <---------ORA47(2)                 <---------PCF2                 <---------RAP2.3(2)                                                   --------------                 --------->DEAR3(1)                                                   <------NtERF2                 <---------DEAR3(1)                                                  ------>NtERF2                 --------->TCP16(1)                                               ------->PIF5                 <---------RAP2.3(3)                                              <-------PIF5                 <---------RRTF1(3)          ------>NtERF2                       --------->O2                 <---------RRTF1(2)         <---------ALFIN1                     <---------O2                <------NtERF2               --------->DEAR3(1)                   --------->TGA1a                --------->RAP2.3(1)        --------->ATERF1(1)                   --------->bZIP60(2)                --------->ATERF1(1)        --------->DEAR4(2)                    <---------TGA1a                <---------ABI4(2)          <------NtERF2                         ====================               <---------ERF1             ------>NtERF2                          --------->ANAC46   -               <---------ATERF1(1)        <---------ATERF1(1)                    --------->ANAC58   -               ------>NtERF2             --------->ANAC58                        --------->ANAC58  <-               --------->ABI4(2)         <---------ALFIN1                       --------->SPL7     --              --------->ALFIN1--------->ANAC58                                 <---------ALFIN1   ---              ----------->HVH21          --------->ANAC58                    --------->ANAC46     ---              <---------DEAR3(1)        --------->LBD16                     <---------LBD16      <---             <-----------HVH21--------->ANAC46  ===========================================bZIP_DOF--     <---------ARR14(2) <-----------HVH21--------->ANAC46               <-----------HVH21    ========     --------->ARR14(2) <-------GAMYB  <---------ATERF1(1)           <---------At4g35610    <-------- ------->YAB1<---------MYB52(1)     ------>ZmHOX2a(1)                --------->At4g35610    <-------- ----ZmHOX2a(2)<---------RAP2.3(1) <---------ALFIN1           --------->ANAC46--------->LBD16<------- --DOF2  --------->MYB52(1)   --------->ANAC58  <----------DOF2  <---------ALFIN1====================   atcatcaaatccaccggtggcgccgccgttacacgctcctcccgcgcctcctttggacacattccctccacatctgtctccgcacgtcgccttggcttct  21032200                                   <------NtERF2       --------->WRKY38(1)       <---------ANAC58       --------->WRKY12          <---------ANAC46       --------->WRKY45         <------NtERF2      --------->DOF5.7(2)     --------->ALFIN1     =================================MYC_MYB     <-------GAMYB           ------->MYC3    <---------MYB46(3)       <-------MYC2   <------NtERF2             ------->MYC4  ------>NtERF2              <-------MYC3  <-----------HVH21          ------->MYC2 --------->DEAR3(1)          <-------PIF5 --------->RRTF1(3)          <-------MYC4 --------->RAP2.3(3)         ------->PIF5 --------->RAP2.3(2)        <---------O2 ------->WRI1               --------->ANAC46          --------->At4g35610 ============MYC_MYB        --------->PIF3(3)         <---------LBD16 -------->RAP2.3(1)         <---------PIF3(3)         --------->LBD16 -------->ATERF1(1)         <---------TGA1a          <---------ANAC46 --------ATERF1(1)          >>>>>>>>>>HY5           --------->SPL7         --------->ICU4 ---->NtERF2                --------->TGA1a       <---------SPL7   <-----------RAV1(2) ------>DEAR3(1)            --------->O2   <---------ZAT18--------->ARR14(2) ------>ANAC46              =========================================bZIP_DOF ------LBD16              <---------ALFIN1 --------->ZAT18<---------ARR14(2)--------->ATHB12 ------->LBD16           <---------WRKY12  <-------TEIL   ---------->DOF2----------->GT1 =====================================bZIP_DOF--------->ANAC46 --------->ZAT18 -ANAC58                 <---------WRKY38(1)<---------ALFIN1   <---------ZAT18                   ---- -ANAC58                ----------------->PIF3(1)<---------ANAC58 <------NtERF2     <---------DEAR3(1) ---DOF2                <----------------PIF3(2) <---------ANAC58 --------->ATERF1(1)  <---------ANAC46 ===bZIP_DOF    <---------CCA1(2)<---------ANAC58<---------ANAC46------>NtERF2   <---------YAB1  <---   ccgccgtcgttgactctcgtttctcggtccacgtggcgtccaaggtccactccgtgcgcggaaagggcgccaggggagtgattacgatggcgaagaagag  21032300           <---------GLK1(1)           --------->GLK1(1)       ------>ZmHOX2a(2)      --------->CCA1(2)                                                                      --------      <------ZmHOX2a(2)                                                                      <-------      --------->At4g35610                                                                    --------     --------->ARR11(3)                                                                      <-------     <---------ARR11(3)                                                                      --------     --------->ARR14(2)                                                                      --------     --------->AGP1                                                                          <-------     <---------ARR14(2)                                                                      --------     <---------ARR14(3)                              <---------ARR11(3)                   -----------     <---------AGP1                              --------->At4g35610                  <---------YAB1    --------->GLK1(1)                            <---------At4g35610                 <---------ARR11(3)    <---------GLK1(1)                     <---------MYB46(3)   ------->TEIL       <---------GLK1(2) ----->ALFIN1                          ------------>MYB.PH3(2)<-----------GT1  --------->YAB1-------- --------RAV1(1)    <---------ARR14(2)--------->ALFIN1 ------>ZmHOX2a(2)     -------->P   -----------   tgttggagatctgaattctgtagatttgaaggggaagaaggtgtttgttagagctgatctcaatgtacctctcgatgacaaccagaatatcactgacgac  21032400  Previous    Next  AGI:  At1g56180.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27290.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47878.1) Range:  from: 21029569    to: 21031729    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g56190.1    Description:  phosphoglycerate kinase, putative. Identical to Phosphoglycerate kinase, chloroplast precursor [Arabidopsis Thaliana] (GB:P50318;GB:Q9SGU6); similar to PGK1 (PHOSPHOGLYCERATE KINASE 1), phosphoglycerate kinase [Arabidopsis thaliana] (TAIR:AT3G12780.1); similar to Phosphoglycerate kinase, chloroplast precursor (GB:Q42961); similar to hypothetical protein [Vitis vinifera] (GB:CAN81990.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96267.1); contains InterPro domain Phosphoglycerate kinase, conserved site; (InterPro:IPR015911); contains InterPro domain Phosphoglycerate kinase; (InterPro:IPR001576); contains InterPro dom Range:  from: 21031903    to: 21034314    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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