Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100    -------->P --------->TOE2(3)  ------>MYB46(1)  ------>MYB83 --------->MYB55(1) ---------MYB55(2)                                                                                --- ---------MYB111(2)                                                                           ------- ---------MYB46(2)                      --------->YAB1                                     --------->TOE1(3) -------->AtMYB61              --------->ANAC58                                            --------->TOE2(3) -------->MYB46(3)             --------->ANAC58                                            --------->YAB1 ---------MYB111(1)          ---------->DOF2                                             -------->P-- >YAB1  <---------ARR11(3) <---------HSFB2a(2)  --------->AtMYB61                       --------->WOX13(1)   cacctaccaatatcacattaaaaccaattccaaaagcatcaatgacaaaaccaaaacaatgaaacaaaaacagaacacaaaaacaagaatcaaccataaa  20990200                        <------ZmHOX2a(1)          <-----------GT1      <----------DOF2  --------->ANAC46                                                          ----   <---------ARR11(3) --------->LBD16                                                           -----   --------->ARR11(3)<---------LBD16                  --------->HSFC1(2)                      ------- ------>AHL20(2)<---------ARR11(3)      ----------->GT1                             --------->ANAC46 -->AHL20(2)    <---------AHL20(1)     <---------TOE1(3)                            --------->ANAC58 -------->DOF2  --------->ARR11(3)     <---------TOE2(3)                            --------->ANAC58   ttaaagctctttctacaatatatccaggaaatttgaactataaggttttaaatcgaagtgtctactctagctctaaatacaagaacaagctactcaacac  20990300                                                                        <---------ANAC58                                                                        <-------GAMYB                                                                        <---------ANAC58                                                                    <---------ANAC58                                                                    <---------ANAC58                                                                 --------->WRKY38(1)                                                                 --------->WRKY12                                                                 --------->WRKY45                                                                --------->DOF5.7(2)                                                              <---------ANAC46      ------->TEIL                                            <---------DEAR3(1) ------->RAV1(1)                                             <------NtERF2                      ----- ---->ANAC46            --------->YAB1        ----------->HVH21<-------GAMYB            <---------At4g35610 -->ANAC46 --------->ANAC46          --------->ICU4        <---------DEAR3(1)           --------->At4g35610   aacacatgaatatacagaacaaagaataagaagagagtaatgaagagtctgaccttcagagacggcgttgacttggttgagagcatcgagagcagactca  20990400                           --------->ANAC58                               --------->ZAT14                           --------->ANAC58                               <---------ZAT14                           --------->ANAC46                      ------->GAMYB                    ---                         <---------ALFIN1                        --------->DEAR3(1)              <---                <---------At4g35610                             --------->DEAR3(2)               <---                --------->At4g35610                            --------->SPL7  <-----------HVH21 <---                <---------ZAT2                <---------DEAR3(1)--------->MYB46(3)               <--- >>>>>>>>>NAM   --------->ZAT2              <-----------HVH21 --------->ARR14(2)      ------>ZmHOX2a(2) ----->DOF2 <-----------HVH21   ---------->DOF2 <------NtERF2 <---------ARR14(2)     <------ZmHOX2a(2)   aagggatgaaacgctgtgagctgaacaacacggccaaagcgactgaggtcggagacagaagtccgaaccgcctcagtgttctgtccgatctcatctagtc  20990500                                                                                          ------>MYB83     <---------------------WRI1                                                           ------>MYB46(1)  ------->TEIL                                                                          <---------MYB59 ------>LBD16          <------NtERF2                                                  --------->ARR11(3) ------ANAC55(2)      --------->LBD16                                                 <---------ARR11(3) ------ANAC46       <---------LBD16                                            --------->TOE1(3) ------ANAC58  --------->AtMYB61             <-------TEIL                      --------->TOE2(3) ------ANAC58 ----------------->AGL1<---------TOE2(2)          <------ZmHOX2a(1)  ---------->DOF2   cgtgaacctcgaagagaccatagccggaagaagactcgtagataacatacatcgccattttttgaggagaagaaactaaaaccctaaagacctactgagc  20990600                                                               <------NtERF2                                                               --------->ATERF1(1)                                                              <---------At4g35610                 --------->ANAC58                   <---------MYB46(3)                 --------->ANAC58                ------->TEIL<---------DEAR3(1)                *TSS     <---------TOE2(3)       <---------ARR14(2)               --------->MYB52(1)  ----------->GT1  <-----------RAV1(1)                            <-              ------->GAMYB      --------->LBD16 --------->ARR14(2)                               <--             <---------MYB52(2)<-----------RAV1(2)<---------At4g35610                  <-----------RAV1(2)             --------->MYB46(3)<---------LBD16   --------->GLK1(2)            ------------>CBF    ---   gagaagaaatatacaacgaacgaaactagggtttcaggggtttaataagcgcatctgttgatggcgctgctcttgaaaaattcaatgggccaggcccatt  20990700                                                                                            <--------                                                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           --------------->AtSPL8                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          <-------GAMYB                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         --------->MYB52(2)                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <---------MYB52(1)                --------->YAB1        <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  --     --------->ALFIN1              ------>NtERF2              <------------------------ANAC81  ------   <---------ANAC46               <---------ATERF1(1)      <----------DOF2              --------->WRKY18(1) --------At5g28300               --------->ANAC46         <------------------------ANAC81  <---------YAB1 ---------GT1                   <---------LBD16        <----------DOF2  <------------------------ANAC81 ------>MYB52(1)         --------->AHL20(2)     ----------->GT1<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --   taacggtgtgttagttgtactagcttataaaatgcccggcccatcacaacaggttaactttctttttttttttttttttttttttttttggtcatccttg  20990800             ----------->GT1                       --------->ATHB51             <---------MYB46(3)                    --------->ATHB12  --------->CCA1(2)                               <---------YAB1                      ------>ZmHOX2a(1)  --------->GLK1(1)                            <---------AHL20(2)                    --------------->AGL15 <---------ARR11(3)                            <---------YAB1                        --------->TOE2(3) --------->ARR11(3)                         --------->AHL20(1)                       <---------------AGL15 -ICU4    ------------>MYB.PH3(2)           --------->AHL20(2)     --------->GLK1(1)----------------- ------->ANAC58          ----------->GT1    <---------AHL20(1)     <---------GLK1(1)----------------- --->AtLEC2  --------->MYB52(2)             <---------AHL20(2)----------->GT1  <---------ALFIN1 ------->ANAC58       --------->DAG2  --------->At4g35610   ---------->DOF2 <-----------GT1   caagatatcaaaagtttgttacaaaaattgaaaaattgtcaactaaaatattattattgaatgaaagtgaaatctgtttctccacatccttatatagaag  20990900                                                                               --------->ATHB12                                                                              <---------ATHB12                                                                              --------->MYB46(3)                                                                             -------->P                      --------->YAB1                                         ------>MYB46(1)       <-                    --------->ANAC58                <---------At4g35610      ------>MYB83        ----                    --------->ANAC58           --------->YAB1      ------>ZmHOX2a(2)            ----- >AGL2 --------->At4g35610                   --------->GLK1(2)   --------->ARR11(3)       <---------GLK1(2) >AGL3 <---------At4g35610              --------->ZAT18          <---------ARR11(3)     ----------->ARR10   aaaattgtcaacttccatatacaagcatatcaaattatagaggggacaatcttcatcttccctccttgatcttgaatccaaccattggcttcgattcgcc  20991000                    <-----------RAV1(2)                  <-----------HVH21                  ------>NtERF2                --------->LBD16            <---------ARR14(2)           <---------GLK1(1)                             <---------ANAC58                --------->bZIP60(1)           --------->At4g35610                           <---------ANAC58             <---------AtMYB61           --------->GLK1(1)            <---------HSFB2a(2)                       <---------ANAC58 ----------------AGL1      <----------DOF2  --------->GLK1(2)                     <---------ANAC58 -->NtERF2 <---------At4g35610          --------->HSFB2a(2)    ---------->DOF2 <------ZmHOX2a(1) ---->DEAR3(1)<---------LBD16 ---------->DOF2         <----------DOF2--------->At4g35610 <---------bZIP60(1)   gtctctaagtggcatctccgggccaggcgctataaagctcgtcgagaagctagtgtctttcgtttgaaagttgctgaatgaggagcttgtggtgtcatca  20991100  Previous    Next  AGI:  At1g56110.1    Description:  NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56). similar to nucleolar protein Nop56, putative [Arabidopsis thaliana] (TAIR:AT3G12860.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ80441.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68269.1); similar to hypothetical protein OsI_011243 [Oryza sativa (indica cultivar-group)] (GB:EAY90010.1); contains InterPro domain Pre-mRNA processing ribonucleoprotein, binding region (InterPro:IPR002687); contains InterPro domain NOP5, N-terminal (InterPro:IPR012974); contains InterPro domain NOSIC (InterPro:IPR012976) Range:  from: 20988054    to: 20990616    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g56120.1    Description:  leucine-rich repeat family protein / protein kinase family protein. similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G56130.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G56145.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G56140.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43415.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46803.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43419.1); contains Int Range:  from: 20990953    to: 20996737    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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