Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           ---------->ID1                                                                                     <----------DOF2                                   <----------DOF2                                 <------NtERF2                                  <---------ANAC58                                ------>NtERF2                                  <---------ANAC46                                <---------ERF1<----                                  <---------ANAC58                                <---------RAP2.3(1)                               <--------P                                        <---------RAP2.3(3)                              <-------GAMYB                                      <---------RAP2.3(2)                              <---------ANAC58                                   <---------RAP2.6(2)                              <---------ANAC58                                   <---------DEAR3(1)                             <---------MYB46(3)                 <---------ZAT18  <---------ANAC46----   --------->At4g35610  <---------ALFIN1                       --------->YAB1   <---------LBD16------ -------ZAT14        --------->ANAC46                 <------ZmHOX2a(1)         --------->RAP2.6(3)   taaacagttgaagaaactcaaactcgacacttggttgctttaatccacagctatgaggaatgctagcatactctatcgatttggcggctttgtcgtaatc  20987200                                                   <---------ANAC58                                                   --------->O2                                                   <---------bZIP60(2)                                                   <---------ANAC58                                                   <---------ANAC46                                                   <---------O2                                                   ==================================================bZIP_DOF                                                   --------->TGA1a                                                   <---------TGA1a                                                <---------DEAR3(1)                                                --------->ETT(2)                                                ----------->HVH21                                                --------->DEAR3(1)                                                <---------ETT(2)                                             --------->DEAR3(1)                                            --------->DEAR3(2)                                            --------->MYB46(3)                                           ------>NtERF2                                          <---------ALFIN1                                         --------->ATERF1(1)                                 <-------                                         <------NtERF2                            <-----------GT1                         ----------->RAV1(1)<------NtERF2                   --------->ARR11(3)          <-----------------AGL1     <---------ANAC58                       <xxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------MYB52(1)     ----------->HVH21<---------ABI4(2)                  <---------ARR11(3) -------GT1             <---------ETT(1)<---------ATERF1(1)           ------>ZmHOX2a(1)   <----------DOF2 ----->MYB52(1)     <---------ANAC58 <---------ANAC58 <-----------HVH21     <---------GLK1(2)<------- --->MYB46(3)       <---------ANAC58 <---------At4g35610   --------->ARR14(2)   <-----------GT1    --   accggttttcagacctgttttggcttccgacagtagtttaggtgccaccgtcgacgtgtcatttctgcaatcctccaagatttttctcacttctttcgtt  20987300                               --------->HSFB2a(2)               --------->AHL20(2)               <---------AHL20(2)               --------->ARR11(3)               --------->AHL20(1)                   <---------AHL20(1)        ----------->HVH21      <---------HSFB2a(2)  --------->AHL20(1)                    <---------AHL20(1)  ------>ZmHOX2a(1)      ----------->GT1            --------->AHL20(2)        <---------ARR11(3) --ANAC58      <---------AHL20(1)       --------->AHL20(2)                   <---------CCA1(2)      - --ANAC58      <---------ARR11(3)       --------->YAB1            --------->GLK1(2)       --------->AHL20(1) ---->ZmHOX2a(1)<---------AHL20(2)<<<<<<<ZML2  <---------WOX13(1) <---------ARR14(2) --------->AHL20(2)   cctcctcccagtgacaatatatttgtaatgttactagaacaataaaaagattgatatattagttagagaatattgtcatatatctaagttaatatatatg  20987400                                                                                 <---------ALFIN1                                                                                <---------REM1(2)                                                                         <---------ATERF1(1)                                                                        <---------DEAR3(1)                                                                       <------NtERF2                                --------->ARR11(3)                   <---------DEAR3(1)                         <------MYB83                              ------>ZmHOX2a(2)                         <------MYB46(1)                         --------->ARR11(3)                 -                      <---------ANAC46                           <---------ARR11(3)                 <           ----------->GT1    <---------YAB1                     <-----------ARR10             ------     <---------YAB1   <---------ANAC58   ================================================MYC_MYB   <-  <---------YAB1      <---------AtLEC2   <---------O2          <---------YAB1   -------->P    ------- ---------->GT1       <---------ANAC58   <---------TGA1a     --------->YAB1 ------>NtERF2 <---------AtLEC2   tatggttattagaagggaaaacttgcttggtgatgatatcgagacgagagtcgagacagtgtatgatgatctcggcgatgccaacacggtctgcatgaac  20987500           --------->ARR14(2)           <---------ARR14(2)     <------MYB83     <------MYB46(1)     <---------ANAC46    <------MYB83    <---------MYB46(3)    --------->MYB59       --------->AtLEC2                                              --------->ARR14(2)    --------->MYB55(2)    --------->ANAC58                                              <---------ARR14(2)    <------MYB46(1)       --------->ANAC58                                           <------NtERF2  <--------P            <---------AtLEC2                                            ------>NtERF2  --------->ALFIN1      <---------ANAC58          <---------ICU4                  <------NtERF2  <--- <-------GAMYB  --------->ANAC58                <----------DOF2                   --------->RAP2.3(1) -------->MYB55(2)<---------ARR11(3)          <---------ZAT18               ========================= ---------MYB46(3)--------->ARR11(3)   --------->ARR14(2)                   ------>ZmHOX2a(1)    ---- ->TEIL --------->ETT(1)<---------ANAC58      --------->ZAT18     --------->YAB1<---------DEAR3(1) --------TOE2(2)--------->ANAC46       <---------ARR14(2)      <----------DOF2 <---------HSFB2a(2)<-- -->MYB52(1)    --------->ANAC58    --------->ETT(1)         ------>ZmHOX2a(1) --------->HSFB2a(2)===   ggaggttgggtcggattcaagacattgcatgcaaatggtcggaacttgtgcattatggcattcctctttcatcaggtccttctcggcgcaaatcggagag  20987600            --------->MYB52(1)          --------->ICU4           ----------->HVH21         <---------YAB1                    ----------->GT1         --------->At4g35610   --------->ICU4                          <---------YAB1         <---------At4g35610   <---------YAB1                   <---------WOX13(1)         <---------ANAC46    --------->ZAT2           --------->YAB1                    <------------CBF            ---------- ------ARR11(3)              <--------HAHB4                   --------->ATHB12             --------->ALFIN1 ====HOX2a_HOX2a             <---------ICU4                  <---------ATHB12            <---------ANAC58 ----->ARR11(3)             <---------YAB1                   <---------YAB1              <---------ANAC46 ----ZmHOX2a(2)  <------ZmHOX2a(1)  <-----------TGA1        <---------TOE1(2)            <---------ANAC58 =======================HOX2a_HOX2a--------->YAB1          ------>ZmHOX2a(1)      <----------DOF2   atcacgagcagagctaacaggagaaacttgatcattatcgtcattatgcgaagtatatttcctatgattgattatgttatatttctttgaggggtgtgaa  20987700                                       <-----------HVH21                                      <------MYB46(1)                                      <------MYB83                                      <---------MYB46(3)                                     <---------MYB46(3)                                     <---------AtMYB61                    --------->At4g35610                                    <--------P                  ---------->DOF2                --------->GLK1(2)  <-------GAMYB   <<<<<<<<<GATA-1        <---------At4g35610     <---------------AtSPL8       <---------MYB46(3)      ------>ZmHOX2a(1)    <------------CBF ->GT1       <---------TOE2(3)   --------->ALFIN1 <-----------GT1       <--------P                  <   tttcttatttgtactaagaatatgggactgggaatgtggttggtcacgagtttatctatccttctcaaaaggaggtagctctattgtttacttacacaag  20987800                                                                                            <--------                                                                                         --------->YAB1                                           --------->AtLEC2                            --------->AHL20(2)                                     ------->GAMYB                                    --------->YAB1                               --------->YAB1         --------->ZAT2             ----------->GT1                               --------->TOE2(3) --------->ANAC58       <-----------------AG---------                     <----------DOF2 ----------->HVH21<---------ZAT2    <-----------------AGL1           <---------AHL20(2)<---------TOE2(3)   --------->ANAC58       =============================          ------------>CBF   <---------TOE1(3)   --------->ANAC46       <-----------------AGL2 <-----------GT1    <---------DAG2 --------->At4g35610--------->At4g35610<---------------AGL15 -----------GT1  <-----------GT1   <---------At4g35610<---------At4g35610--------------->AGL15  -----   ttttaacatctattcaattttaccttttgttaatgttaactgaccattcaaacgcgagctgctcttcttctattactccatttgggtaaaataataaatc  20987900                                                     <---------MYB52(1)                                                   --------->MYB46(2)                                                   --------->MYB111(1)                                                   --------->MYB111(2)                                                   <---------MYB46(3)                                                  <--------P                                                <------MYB46(1)                                                <------MYB83                                               --------->MYB59    --------->ATHB12                                         ----------------->AG     --------->ATHB51 -AHL20(2)                               ------------>CBF         -------->ATHB1 >AHL20(2)        <-----------GT1       <-----------------AG     <---------YAB1 =========================================================MADS_MADS ---->YAB1 <-------TEIL                 <-----------------AGL1   --------->ICU4  ---------->DOF2   atatggctccaaattcattttcacaaacttgttaagctagttttccaatttggtagttagtttagctattattgaaacatttgcaaagcactggaattgg  20988000                                  <-------GAMYB                            ------>ZmHOX2a(1)                       --------->ATERF1(1)                      <---------ATERF1(1)                     --------->ARR14(2)    --------->TOE2(3)                           --------->TOE1(3)                     <---------ARR14(2)   --------->ANAC58                 --------->ARR11(3)                    <------ZmHOX2a(1)     --------->ANAC58  <---------MYB59--------->AHL20(1)                    --------->ATERF1(1)   --------->ANAC46  --------->TOE2(3)          --------->TOE2(3)            <---------AHL20(2)------------>AtMYB77          --------->TOE1(3)       <---------ALFIN1           --------->AHL20(2)<---------REM1(2)       <---------ZAT6        <---------AHL20(1)       -       <---------AHL20(2)   <-----------HVH21      ----------->GT1         <---------ARR11(3)       <   taattgtattttataaaatggaggagcctccttcacggttgcaaacgtcaaaatagtgaaaacctaaacaaacttaagatattgccaaaccttgaatcgt  20988100  Previous    Next  AGI:  At1g56100.1    Description:  pectinesterase inhibitor domain-containing protein. similar to COP1-interacting protein-related [Arabidopsis thaliana] (TAIR:AT2G01800.3); similar to unnamed protein product [Vitis vinifera] (GB:CAO47926.1); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) Range:  from: 20984034    to: 20987644    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g56110.1    Description:  NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56). similar to nucleolar protein Nop56, putative [Arabidopsis thaliana] (TAIR:AT3G12860.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ80441.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68269.1); similar to hypothetical protein OsI_011243 [Oryza sativa (indica cultivar-group)] (GB:EAY90010.1); contains InterPro domain Pre-mRNA processing ribonucleoprotein, binding region (InterPro:IPR002687); contains InterPro domain NOP5, N-terminal (InterPro:IPR012974); contains InterPro domain NOSIC (InterPro:IPR012976) Range:  from: 20988054    to: 20990616    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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