Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   --------->AHL20(2)                                                                    --------->ANAC46    --------->MYB52(1)                                                                 ------>ZmHOX2a(2) <-----------GT1                                                           --------->YAB1     ------>MYB46(1)       -                                                        <----------DOF2       ------>MYB83          <                                              ---------->DOF2    ====================================    <-------TEIL                   --------->MYB46(3)<---------ALFIN1     >>>>>>>>>>MYB80      <-----   gtcagtttcatcttcaatccaaaaatccaaaaattcaaccaattgagtaaaagacacactttgatgatccaagtcaaaccaaatttaacaaaactgagga  20979600           <---------YAB1    <-----------GT1 --------->ATHB51 <--------HAHB4 --------->YAB1                                    ---------->DOF2 -------->ATHB1                             <-------TEIL <---------ICU4                            <----------DOF2 -------->ICU4                           <---------ZAT2                                             - ---------YAB1                           --------->At4g35610                                   ------ =HOX2a_HOX2a                            <---------At4g35610            --------->GLK1(2)      ------ -ZmHOX2a(1)                             --------->ZAT2      ---------->DOF2          <-------TEIL  <   gaattattacattttcatcgacaacattcttcaaactcgagtcagcttcatggtaaagtctttcaaaggaagagactctgtcttcaagttcatgaacaag  20979700              <---------HSFC1(2)              <---------HSFB2a(1)    ------>ZmHOX2a(1)  --------->HSFC1(2)                                                                        <--------  --------->HSFB2a(1)          <------NtERF2                                                <--------  <---------HSFC1(2)          --------->LBD16     <-------TEIL                           ------>ZmHOX2a(1) <------ZmHOX2a(2)          <---------LBD16     --------->ARR14(2)                     ----------->RAV1(2) -------->ARR14(2)        --------->ANAC58      <---------ARR14(2)                  ------>ZmHOX2a(2) --->ANAC58   --------->HSFB2a(1)               <---------GLK1(2)                 --------->ARR11(3) --->ANAC58   --------->HSFC1(2)            ----------------->AGL1        --------->AtLEC2  <-------- ---------ARR14(2)        --------->ANAC58--------->GLK1(2)  ---------->DOF2      <---------ARR11(3)   ccgatccttctcaagaagcttctgtctcaagccggagacttgagattccagattcgaaacccttgaagcgatagccatggaagtgatcttcctggcgagg  20979800                           <---------At5g28300                   --------->ALFIN1                  <-------GAMYB                                                                 -----                 <------MYB83                                      <----------DOF2             <-----                 <---------MYB46(3)                             --------->RAP2.3(2)            ------                 <---------DEAR3(2)                             --------->DEAR3(1)             <-----                 <------MYB46(1)                               --------->RAP2.3(1)            <------                <---------DREB2C(2)                            --------->DEAR4(2)             -------                <---------DEAR3(1)                            --------->ABI4(1)               <------                <---------DEAR4(1)                            ------>NtERF2                   -------                --------->MYB46(2)       <-----------HVH21   --------->DEAR3(1)               <------                --------->MYB111(1) <---------ARR14(2)      --------->MYB46(3)                <------                --------->MYB55(2)  --------->GLK1(2)       --------->ATERF1(1)               -------                --------->MYB111(2) --------->ARR14(2)      --------->DEAR3(2)            <---------LBD16       --------->YAB1      <---------LBD16 <---------DEAR3(1)--------->ANAC46            <---------LBD16      <---------YAB1      --------->MYB52(1) <------NtERF2 <---------ATERF1(1)       --------->ZAT18 -ANAC58        <---------AtMYB61   <-----------ARR10      <---------At5g28300       --------->PCF2 -ANAC58        <---------MYB46(3) <---------GLK1(2)    <-----------HVH21            <---------ZAT18 -ANAC46      <-----------HVH21<---------ANAC46 <---------AtMYB61------>NtERF2  ---------->DOF2<-----   tcgagttgatcataagggtcggtgggaatcacggcgagaatctcgtcggagaggttgaagtcaccgccgctttgagacatcgcaaagggccctcgggatc  20979900                                         --------->CCA1(2)                                         --------->ARR14(1)    ------>NtERF2               --------------------->WRI1 --------->At4g35610   <---------ANAC58 --------->ARR11(1) <---------At4g35610   <---------ANAC55(1)          <---------AHL20(2) ->ZmHOX2a(2)          <---------ANAC46 <---------ARR14(2) ----HSFC1(2)          <---------bZIP60(2)<-------TEIL --->HSFB2a(1)         <---------ANAC58 --------->ARR14(2) ----HSFB2a(1)        <------NtERF2     <---------GLK1(2) ---ARR14(2)      <---------ANAC55(2)  <---------HSFC1(2) -->ARR14(2)      --------->O2 --------->ATHB12 <---------DAG2 -----ARR10       <---------ANAC46     --------->HSFB2a(1) -->ARR14(3)      <---------bZIP60(2)  <---------HSFB2a(1)                                <---------- ---ARR11(3)      <---------O2<---------YAB1  <---------TOE1(2)                         --------->AHL20(1) ---ARR14(3)      <---------ANAC58     --------->HSFC1(2)                               <---------AHL20(1) -->ARR11(3)      <---------ANAC58    ----------->ARR10 *TSS<----------DOF2       ----------->GT1 -ZmHOX2a(2)--------->AHL20(2)<---------AHL20(2)<----------DOF2     ----------->HVH21   --------->ARR11(3)   ttcggctgcctaaataaactacgtggcgtgtttttattggaagattcgcactttttatttgtctttgtccgagacagagagagatagttatatattgacc  20980000                  <---------AHL20(2)                            --------->TOE1(3)                 --------->AHL20(1)                           <---------ARR11(3)                 <---------AHL20(1)                           --------->ARR11(3)              --------->AHL20(2)                         --------->AHL20(2)               <----------           <----------DOF2            <---------MYB52(1) <---------AHL20(2)    ----------->GT1    ----------->RAV1(2)              <----------DOF2<---------YAB1     <----------DOF2   <-----------GT1 --CBF----------->HVH21        <-----------GT1   ---------->ID1 --------->TOE2(3) <-----------GT1 <--   atgaaaccctgaccttttatatatttcatgtttaaacccctttagctatttgttcttatttaaataccttcaactttggttttgttacaatttaaccctt  20980100                                                                                <---------LBD16                        --------->ARR14(2)                                 ---------->DOF2                        <---------ARR11(3)                           --------->MYB52(1)            --------->ARR11(3)                                       ----------->RAV1(1)     <-------   <-----------GT1     <---------GLK1(1)                           --------->LBD16      <-------GAMYB -GT1       <---------ARR11(3)                     <----------DOF2--------->HSFB2a(2)  <---------MYB46(3) --------DOF2          --------->GLK1(1)<----------DOF2<-----------GT1 --------->ZAT6  --------->MYB52(2)   cttttaaaccccaagaacttgaacgatatctgaaaaactcaactttggttcttcttttttcttcccttccccaacagtaatgctcgggtttgttgatgaa  20980200                   <---------ZAT18                  <---------ANAC58                  <---------ANAC58                 --------------->AtSPL3                 --------------->AtSPL8                 <---------------AtSPL8               --------->DAG2              ---------->DOF2                                         <---------ZAT18          <---------ZAT6                                 <---------ARR14(2)    --------->ANAC58                                     --------->ARR14(2)    --------->ANAC58 --------->SPL7                   <---------TOE2(3)                   -----------  --------->CCA1(2)--------->ZAT18                    <---------TOE1(3)             <---------YAB1 --YAB1 ----------->GT1   <----------DOF2            <-----------RAV1(2)    <-----------HVH21   tgagataagctagtgaaaaagcgtactactttcttctcacttctaatttttggtttcaggttatgcaggtagtgaacatgtcagttcttattgtgacaag  20980300                                                                       --------->ANAC58                                                                       --------->ANAC58                                                                  ------>ZmHOX2a(2)                                                                 --------->CCA1(2)                                                                 <------ZmHOX2a(2)                                                                <---------AGP1                                             --------->AtLEC2   --------->AGP1                                         <---------WRKY18(1)    --------->ARR11(3)        --------->ARR14(2)                                        --------->WRKY38(1)     <---------ARR14(3)        <---------ARR14(2)                             --------->AHL20(2)                 <---------ARR14(2)       <---------CCA1(2)                   --------->ARR11(3)   --------->WRKY12        --------->ARR14(2)     <---------ANAC58              <---------WOX13(1)        ----------->HVH21       --------->ARR14(3)     <---------ANAC58  <---------ANAC46 <---------ARR11(3) <----------DOF2           <---------ARR11(3)   <-----------GT1 >HVH21     --------->ATHB12 <---------AHL20(2)               ----------->ARR10  <----------DOF2   tcttggggatagagtgattgatatctaacaaataaatgccctttgacctgcaaaaaactttcttaagatctgcaagtaagtgtctttttgcctatctact  20980400                     <---------ICU4                  --------->YAB1                  <---------ICU4                                           <---------ANAC58       ---             --------->ARR11(3)                               <---------------AtSPL3          -------             <---------ARR11(3)                               <---------------AtSPL8    --------->ANAC46            --------->YAB1              <-----------GT1     <------ZmHOX2a(2)           <---------ALFIN1 <-----------GT1 <-------TEIL      ----------->GT1        <------ZmHOX2a(1)<---------ANAC58   <------   aagtaacatttccatgatattcattatgtctcttaaggggtttaacttactatatggataggatcaagtactacaatgggtgtctcttccacacagtgca  20980500  Previous    Next  AGI:  At1g56080.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G16520.1); similar to unknown [Populus trichocarpa] (GB:ABK96045.1); contains InterPro domain Paired amphipathic helix; (InterPro:IPR003822) Range:  from: 20977826    to: 20979956    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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