Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   ----                                                                                             <-------                            <---------ATHB12                      <---------YAB1             --------                            --------->ICU4                 --------->YAB1                    <-------                           <---------TOE2(3)        <-----------GT1--------->YAB1       --------->YAB1                    ---------->DOF2               --------->AHL20(2)                   <---------YAB1                 <----------DOF2            <---------ARR11(1)  --------->YAB1        <--------------           <---------ARR14(2)         <-----------GT1    <-----------HVH21         <----------DOF2           --------->ARR14(2)--------->YAB1<---------ARR14(1)<---------CCA1(2)     <---------DAG2<---   gtgaattgacgactattcgcttgaaagctaatgatgttcttcaccgtatcaataaaaccagtcatatcatcataagaaatcgtccctttatcattctgga  20930700                                      --------->ANAC58                                      --------->ANAC58                                 <---------ICU4                                                     <         <---------ANAC58        --------->YAB1                                                   <xx         <---------ANAC46       <---------YAB1                                                   ----   <---------ATHB12           --------->YAB1                                                     <xxx  -------->P            <------ZmHOX2a(2)                                                        xxxx --------->WOX13(1)    --------->ARR14(2)                                                      xxxxxx ----->GLK1(1)         <---------ARR11(3)                                                    <xxxxxxx --HSFB2a(2)           --------->ARR11(3)                                                   <-------- ->HSFB2a(2)           <-----------ARR10                                  --------->At4g35610<------- --HSFC1(1)--------->AtLEC2  <---------YAB1                           <---------ARR14(2)  --------->YAB1 ---AGL1 <---------ANAC58------>ZmHOX2a(2)                            --------->ARR14(2) <---------YAB1 ------GLK1(1)         <---------ARR14(2)                     <----------DOF2   xxxxxxxxxxxxxxxxxxxxx   aatcaaccatgccttgcaacaagacgatcttatcatcatcactcaatattctttgaaaatacttctttttggtatctgttgacaccatcttatcatcatt  20930800                         --------->ARR14(2)                         <---------ARR11(3)                         --------->ARR11(3)                         <---------ARR11(1)                         <-----------ARR10                        <---------CCA1(2)                        --------->GLK1(1)                       <xxxxxxxxxxxxxxxxsmallRNA(i)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     --------->LBD16                    --------->ANAC58                    --------->ANAC58                   --------->MYB46(3)                 --------->ARR14(2)               ------->GAMYB              --------->ANAC46                                                             ----------              --------->ANAC58                                                           <---------YAB1            --------->MYB52(1)                                                      --------->YAB1     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                           <xxxxxxxxxxxxxxxxx ---------ICU4--------->ANAC58                                                 --------->At4g35610 xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            <-----------HVH21<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ----->YAB1--------->MYB46(3)                      --------->GLK1(2)           <xxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxsmallRNA(i2)                  xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->ICU4 xxxxxxxxxxxxxxxxx>smallRNA(i2)       <---------At4g35610     xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxx>smallRNA(i2)       <---------ZAT2     ------->TEIL         --------->RAP2.6(2) xxxxxxxxxxxxxxxxsmallRNA(i2)         --------->ZAT2  <---------YAB1        --------->At4g35610 -YAB1  --------->REM1(1)<---------ARR14(2)       <---------GLK1(2)    <----------DOF2 --------->YAB1 --ICU4xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------YAB1 xx>smallRNA(fl3)<---------ARR14(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------At4g35610  ----   catcttggctacaacaacggaaccgcaaatcttcttctccagctcggtttcagaatatgaatcggagtcatgcctttcagcagcaacgatgataaaagca  20930900                                                                                    <---------GLK1(1)                                                                                   --------->ARR14(2)                                                                                   <---------ARR14(2)                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                              <---------DEAR3(2)         --------->GLK1(2)                                                   <---------At1g77200        --------->ARR11(3)                                                   <---------DREB2C(2)        <---------GLK1(2)                                                    <---------DEAR3(1)        <---------ARR14(2)                                                <---------ANAC58        --------->ARR14(2)                                                <---------ANAC58        <---------ARR11(3)                                             --------->GLK1(2)       <---------HSFB2a(1)                                            <---------GLK1(2)<<<<<<<<<<<<<<       --------->HSFB2a(1)                                           xxxxxxxxxxxxxxxx>smallRNA(i)       --------->HSFC1(2)                                        <xxxxxxxxxxxxxxxxsmallRNA(i)       <---------HSFC1(2)       ------>ZmHOX2a(1)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <------NtERF2           <-----------GT1                    <------NtERF2 <---------MYB46(3)   --------->LBD16   <---------RVE1(1)                        ------>NtERF2<-----------HVH21 <---------LBD16     <---------CCA1(1)                      <------NtERF2 <---------ANAC46          x >DOF2----------->ARR10   <-----------GT1                   --------->ATERF1(1)<-------GAMYB <------- xxxxxxsmallRNA(fl3)--------->ARR11(3)                     <---------ATERF1(1)<---------MYB46(3)    x xxsmallRNA(i2)     <---------AHL20(1) ------>ZmHOX2a(1)  <---------DEAR3(1)<---------MYB52(1)  <---- ----->At4g35610    <---------ARR11(3)--------->TOE2(3)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<--------   gaagccggaagattcttaccaagatatttttctccttcttcctcagtctccattttctcgtcgtcgccataagattccgtcggtggattttccaatggtt  20931000                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                               --------->MYB46(3)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                        ------>ZmHOX2a(2)                       <---------HSFB2a(1)                       --------->HSFC1(2)                       --------->HSFB2a(1)                       <------ZmHOX2a(2)                  <---------At4g35610                  <------NtERF2<xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                <---------DEAR3(1)               <---------LBD16<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)      <----------DOF2 <---------ARR14(2)   <---------ARR11(3) --------->ARR14(3)   --------->ARR11(3) --------->ARR14(2)  <---------CCA1(1)   <-----------ARR10  <---------GLK1(1)   <---------ARR11(1)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->GLK1(1)   <---------ARR14(3)               <----------DOF2  --------->RVE1(1)   <---------ARR11(3)              ------>ZmHOX2a(2)  --------->CCA1(1)   --------->ARR11(3)            <---------AGP1  <---------RVE1(1)  <------NtERF2                  ------->TEIL --------->ARR11(3)  <---------ARR14(1)             --------->ARR11(3) <---------ARR11(3)  <---------CCA1(2)              <---------ARR11(3)                      --------- xxx>smallRNA(fl3)<---------LBD16                   <---------ARR14(2)                      --------- <<<LFY        ===============HOX2a_HOX2a           --------->ARR14(2)                   xxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <-----------HVH21      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --MYB46(3)    ------>ZmHOX2a(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                <---------MYB52(1) xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      <---------At5g28300<---------LBD16         <-------GAMYB -----REM1(1)  ================HOX2a_HOX2a --------->DEAR3(1) --------->LBD16      <-----------RAV1(1) -ATHB12xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   gtagatatcttttcttcctcggcggatcttccaacaatctcttcaccgtcgatggatctttctccggtttgagacacttgttcttctgttgggaacgctt  20931100                                                                        <-----------RAV1(1)   <---------ANAC58                                               ---------->ID1   <---------ANAC58                                          <---------AHL20(2) >ANAC58         <----------DOF2      ---------->DOF2<------------------------ANAC81 >ANAC58    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     <----------DOF2 <----------DOF2 xxxxxxxxxxx>smallRNA(fl3)  --------->ALFIN1      <---------YAB1 <-----------GT1----------->GT1    <-   gtttttcttggccatcaaacttttgagagagtgggaggccaaaagttttgttattcttttcattttttttccttttgttgtcaagataaaaaaacgtttc  20931200                                                                   <----------CDC5                            <---------ARR11(3)<-----------RAV1(1) <---------At4g35610                            --------->ARR11(3)<---------ANAC46    --------->At4g35610                        ---------->DOF2       --------->ALFIN1    ------>NtERF2                  --------->YAB1       <------------CBF          --------->DEAR3(1)                --------->ARR11(3)    <---------AHL20(2)      --------->ANAC46                <---------ARR11(3)   --------->AHL20(2)  --------->ZAT14         --------->ALFIN1 --------MYB52(1)<---------YAB1     <-----------TBP      <---------ZAT14        <-------GAMYB     ---   agttttgtaatgagataatatcatagtaaaggtcttctatttattgtggtgttggactcttcactcgccgcttagcatctagggttgagctatagttgct  20931300                     --------->DAG2                                               ------------>CBF                    ---------->DOF2                                         ----------->RAV1(2)        ---------->DOF2                                                     --------->At4g35610     <---------HSFB2a(2)                                --------->TOE2(3)   <---------At4g35610     --------->HSFB2a(2)                    <----------DOF2          <---------TOE2(3)        ------- ------>REM1(1)----------->GT1        <----------DOF2   <----------DOF2  <-------TEIL  <---------ARR11(3)   acaacttccaaaaagaagggctaaaagtagacctcataagctttctctttagtctcaactttaatgtcactaatgttcatctgtcccaatatcaactaca  20931400                                       <---------WOX13(1)                                     --------->ATHB12                                   <---------WOX13(1)                                 --------->ATHB12                                <---------YAB1                                               <-------                                --------->ICU4                                          <---------MYB52(1)                              ---------->DOF2             <---------------AtSPL8       <----------DOF2                           --------->ANAC58         <---------MYB59             --------->YAB1                           --------->ANAC58       <---------ARR11(3)           <---------YAB1<-------  ------------>CBF         <---------ANAC55(2)    --------->ARR11(3)         --------->YAB1  <------- ----->CBF             --------->GLK1(2)      ---------->DOF2          --------->YAB1 --------->TOE2(3)   atcgaacaatttgtagtgactcaagaatcaagtaaagattgattgggataaagaccttacatagtacatacaattacaagaatgataacctttaggcttg  20931500                                     ------>MYB83    --------->ANAC58                                     ------>MYB46(1) --------->ANAC58                               -                                   --------->DREB2C(2)     <---------ZAT6                           - --ANAC46               --------->YAB1            <---------ARR14(2)          --------->REM1(1) ----- --ANAC58      <----------DOF2  <---------ALFIN1  --------->ARR14(2)     <---------------AtSPL8 ----- --ANAC58  ------->TEIL<-------TEIL--------->DEAR3(1)--------->ANAC46  <-----------RAV1(1)    -------   tatgtttataatgtatgcttttacattcatatcaacaccgacttgcattttgtatacgctagtggtagtactactgtggtacaacaatttgataccaaaa  20931600  Previous    Next  AGI:  At1g55950.1    Description:  similar to DNA-binding storekeeper protein-related [Arabidopsis thaliana] (TAIR:AT2G01370.1); similar to unknown [Populus trichocarpa] (GB:ABK93310.1); contains InterPro domain Protein of unknown function DUF573 (InterPro:IPR007592) Range:  from: 20930504    to: 20931115    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g55960.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13062.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13062.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41766.1); contains InterPro domain Lipid-binding START (InterPro:IPR002913) Range:  from: 20931308    to: 20933682    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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