Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               --------->WRKY12                             --------->WRKY38(1)               <---------HSFC1(2)               --------->HSFB2a(1)               <------MYB83  --------->WRKY45                               ----------->HVH21               <------MYB46(1)                                       <---------ANAC58               ----------->GT1                                       <---------ANAC58               --------->HSFC1(2)                                  <-----------GT1           <-------      --------->YAB1        <---------MYB52(1)               <---------AHL20(2)              --------   --------->YAB1           --------->DOF5.7(2)             <---------AHL20(2)             --------->YAB1  --------->ICU4  <-------TEIL                              --------->AHL20(2)            <---------YAB1 ---->DOF2     <---------HSFB2a(1)--------->MYB52(1)       <---------WOX13(1)       --------->ATHB12 -ID1<---------YAB1        <-------GAMYB     <---------MYB52(1)<---------YAB1      <---------ATHB12--   agaaattatcatatggaaggttcatttttcgttgactaacaaataccgttttttttctctgatttatttttacttggtttgacaaatgatttatgattat  20909400                                                                         <---------ZAT18                                                                         --------->ZAT18                                                                     <---------------AtSPL3                                                                     <---------HSFB2a(2)                       --------->ANAC58                              <---------------AtSPL8                       ----------->GT1                         <---------------AGL15               <---------MYB46(3)                              <---------DAG2           -------->ATHB1                                      --------------->AGL15           --------->ATHB51                                   ----------------->AGL1           --------->ATHB12                                   <-----------------AGL3          <---------AHL20(2)                                  ----------------->AG          --------->ICU4                                      ----------------->AGL2 <----------DOF2       --------->ANAC58                       <-----------------AGL2  <-----------GT1 --YAB1   <---------ATHB51                                  <-----------GT1----------->GT1 ->ICU4   <---------YAB1--------->TOE2(3)            ----------->GT1 --------->HSFB2a(2) ----->TEIL<---------ICU4                        ---------->DOF2<----------DOF2   <---------ICU4   gaactttgagaaattattggttgaaacgtcaatttgtatgtattgctaaaaaaaagagtaaattaccttttctagtacgcttaatatttatctgtctgtt  20909500                                                                                       <---------DAG2                                                                                       <----------DOF2                                                                                    <-----------GT1                                                                                 <---------------AtSPL8                                                                                 --------------->AtSPL8                                           <---------ATHB12                    <---------ICU4                <-------TEIL             --------->WOX13(1)                    <--------ATHB1                --------->ZAT18         >>>>>>>>>GT-1                          --------->ATHB51            <---------TOE1(3)        ----------->GT1                           -------->HAHB4<-------            --------->DAG2           <------MYB46(1)       <---------ANAC58   --------->AHL20(2)   <---------ANAC58                  <------MYB83    <---------GLK1(2)        <---------ATHB12   --------->ANAC55(2)               <---------ANAC55(2)   <---------ANAC58   --------->ICU4 --------   <---------ANAC55(2)              --------->MYB46(2)   <-----------GT1      <---------ATHB51------>ZmHOX2a(1)   <---------ANAC55(1)              <---------TOE2(3)--------->ARR11(3)       <---------AHL20(2)   <---------ANAC58                 --------->MYB59  <---------ARR11(3)     ------>MYB83     --------   <---------ANAC46            <---------YAB1--------->WOX13(1)             ------>MYB46(1) ---------   tcaatgcgtgtcttaaggtgcaatatcaggtttacaattaggtaaatcaattacagatttttcttgttaatctgaaccaaataattgtactttttcctaa  20909600                                                                                       ------->GAMYB                                                                                      --------->MYB46(3)                                                                                     ------>MYB46(1)                                                                                     -------->P                                                                                     ------>MYB83                                                                                   ------->GAMYB                                                                                   --------->MYB46(3)                                                                                   --------->AtMYB61                                                             ------>ZmHOX2a(1)     <---------MYB111(1)                                                             <----------DOF2      --------->MYB46(3)                                                     --------->ANAC55(1)          <---------MYB52(2)                                                     <---------ANAC55(2)          <---------MYB55(2)                                       ---------->DOF2--------->LBD16            -------->P                               --------->MYB46(3)    --------->ANAC58            --------->ANAC58         ---------->DOF2     ------->GAMYB           --------->ANAC46            --------->ANAC58      --------->YAB1        <---------MYB111(2)      --------->ANAC58           --------->WOX13(1) --------AGL15              <---------MYB55(2)       --------->ANAC55(2)      <---------ATHB12 ->TOE2(3)                  --------->MYB46(3)   <---------ALFIN1        <---------ANAC58        ---- ------->AGL15              <---------MYB111(1)------>ZmHOX2a(1)         <---------ANAC58     ------- -------->AG    <---------PCF2-------->P       <-----------HVH21         <---------ANAC46     -------   atttgaattcataaagagggtccaagtctaacaaccacttacaaagctccttcacccgtaatccttttcaatgtgtcgtaatcaaccaaccaaaaaccat  20909700       <---------------AtSPL8   <------------CBF                                                  --------->ANAC58 --------->AHL20(2)                                                  --------->ANAC58 --------->AHL20(1)                  --------->TOE1(2)           <-----------GT1 <---------AHL20(2)                <---------------AtSPL3    --------->AHL20(1) <---------AHL20(1)                --------------->AtSPL3    <---------AHL20(1)                     - ----->AHL20(2)                    <---------------AtSPL8   <---------CCA1(2)                       - -->TOE2(3)                       ---------->DOF2     <---------ALFIN1          <----------DOF2     - -->TOE1(3)                    <----------DOF2     --------->ANAC46  --------->ANAC46              *TSS   aaatttattgtagtacaaaacaaaactccatgactttaaagtacgactcttaaacaccacttatatattacacgacatatcgcttaacttcgaatttcag  20909800          --------->ANAC46                                  <---------ANAC58         ------>MYB46(1)                               <---------ANAC58                    --------->LBD16         ------>MYB83                                  <---------ANAC58                  <---------LBD16 -------->ANAC58                                  ------>ZmHOX2a(1)        <---------CCA1(2)   <----- -------->ANAC58                            <<<<<<<<<TBF1   <---------ANAC58           --------->ARR14(2) -------->ANAC46                      ---------->ID1<----------DOF2<---------SPL7      <---------ARR14(2)   acacacaaacccactgaacattcaaatgtctcgttctcttgtcttcttcttcctctttcttgtcttggtcgtcccttgtctctcccatggaaccggagga  20909900                                                                              <---------ANAC58                                                                       ------>ZmHOX2a(2)                                                                <---------MYB52(1)                                                      ------>ZmHOX2a(1)==============================                                                      =======================HOX2a_HOX2a                                                      ========================HOX2a_HOX2a                                      =======================HOX2a_HOX2a   <---------CCA1(2)                                      <------ZmHOX2a(2)        <-----------HVH21   --------->YAB1                               --------->GLK1(1)     --------->TOE1(3)===============================                               <---------GLK1(1)     --------->TOE2(3)<------ZmHOX2a(2)      ------>NtERF2    --------->ANAC58           --------->ARR14(2) <---------ARR11(3)   <----------DOF2     --------->DEAR3(1)--------->ANAC58           <---------ARR14(2) --------->ARR11(3) <---------YAB1  --------->ANAC46    <---------TOE1(2)======================HOX2a_HOX2a  <---------TOE1(2)      ---- -ZmHOX2a(1)          <---------TOE2(2)------>ZmHOX2a(2)      --------->ANAC46<---------ANAC58-------   gaccacgacgacgatgaggcttcgcacgttaagagttccgatctcaaatccaaatccttaatctccgtcaagatcgcatgtcttgtcatcatctttgtcc  20910000                                                                                      <---------ANAC58                                                                                      <---------ANAC46                                                                                      <---------ANAC58                                                                                   <---------CCA1(2)                                                                               <---------ANAC58                                                                               <---------ANAC58                                                                            <---------DEAR3(1)                                                                           --------->ATERF1(1)                                                                           <------NtERF2      -------                             <---------------AGL15                        <---------SPL7      -------                            <---------ANAC58                              <---------ATERF1(1) -------                            <---------ANAC58                              --------->LBD16    --------                            <-----------------AGL3                       --------->DEAR3(1)  <-------    --------->YAB1    ------>ZmHOX2a(1)                                 <---------LBD16      <-------   <-------TEIL --------->ARR14(2)                             --------->ANAC58<---------ANAC46 ===HOX2a_HOX2a ------->TEIL<---------ANAC46                   --------->ANAC58<---------ANAC55(1) ===HOX2a_HOX2a <---------ARR14(2)                            --------->ZAT18 <---------------------- -->ZmHOX2a(1) <---------CCA1(2)          --------->MYB52(1)  <---------ZAT18 <------NtERF2  -------- --->ID1     --------->ALFIN1--------------->AGL15        --------------->AtSPL8 --------->ALFIN1   tcacgttcataagcggtgtatctccttatttcttgaaatggagccaagggtttttggttcttggtacacaattcgccggaggcgtgtttcttgcaaccgc  20910100                                                 <---------LBD16                                                 <------NtERF2                                                ------>NtERF2                                                <---------RRTF1(1)                                                <---------RAP2.3(1)                                               <---------RAP2.3(2)                                               <---------RAP2.3(3)                                               <---------RRTF1(3)                                               <---------RRTF1(2)                                               <---------RAP2.6(2)                                               <---------DEAR3(1)                                               <---------ATERF1(2)         <---------ANAC58                      --------->ATERF1(2)     ------->TEIL                           ----------->HVH21 >GAMYB  <---------ANAC58                 <-------GAMYB -->RAP2.6(2)                            <---------MYB46(3) -->DEAR3(1)       <---------At4g35610   --------->MYB52(2)                ------>NtERF2 ->DEAR3(2)      --------->SPL7        <---------ANAC46                    --------->LBD16 --MYB55(2)    ----------->HVH21  <---------ANAC46              <------NtERF2            <---------ANAC58 -----AtMYB77  <---------SPL7     <---------ANAC58      <------ZmHOX2a(1)<---------LBD16 <---------ANAC58 -TaNAC69(2)  --------->ETT(1)    <---------ANAC58  <------NtERF2 ------>NtERF2          <---------ANAC46 ->MYB46(3) <-----------HVH21 <---------HSFC1(2)<---------ERF1<---------DEAR3(1)-------->P     <-----   cttgatgcatttcttgtcggacgctgatgagacgtttcgtggtttgttgacggcggaaggagagtcggagccatctccggcttacccatttgcttatatg  20910200                              <---------At4g35610                           <---------ANAC58                           <---------ANAC58                    >>>>>>>>>>WRKY6                    >>>>>>>>>>WRKY11                    <---------WRKY18(1)            --------->ARR14(2)                <-----------RAV1(1)                <---------ARR14(2)      <---------At4g35610<---------YAB1            --------->ARR11(3)                         ------- <---------ANAC58  --------->WRKY45                <---------ARR11(1)                 <---------TOE2(3) <---------ANAC58  --------->WRKY38(1)            <---------CCA1(2)               <----------DOF2 <---------ANAC46  --------->WRKY12    <-----------HVH21   ---------->DOF2      <---------At4g35610 ------RAV1(1) <---------TOE2(3)  <---------GLK1(2)<-----------ARR10            --------->At4g35610   ttggcttgtgctggttttatgttgaccatgcttgctgattctgtcatcgctcatatctactcaaagacccaaaacgatttggagcttcaaggtaccaaaa  20910300  Previous    Next  AGI:  At1g55900.1    Description:  TIM50 (EMBRYO DEFECTIVE 1860). Identical to Import inner membrane translocase subunit TIM50, mitochondrial precursor (TIM50) [Arabidopsis Thaliana] (GB:Q8VYE2;GB:Q56X01;GB:Q9LG22); similar to NLI interacting factor (NIF) family protein [Arabidopsis thaliana] (TAIR:AT1G29780.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41172.1); contains InterPro domain NLI interacting factor (InterPro:IPR004274) Range:  from: 20906733    to: 20909393    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g55910.1    Description:  ZIP11 (ZINC TRANSPORTER 11 PRECURSOR); cation transmembrane transporter/ metal ion transmembrane transporter. Identical to Zinc transporter 11 precursor (ZIP11) [Arabidopsis Thaliana] (GB:Q94EG9;GB:Q9LG21); similar to ZIP2 (ZINC TRANSPORTER 2 PRECURSOR), transferase, transferring glycosyl groups / zinc ion transmembrane transporter [Arabidopsis thaliana] (TAIR:AT5G59520.1); similar to putative zinc transporter [Solanum lycopersicum] (GB:ABL61268.1); contains InterPro domain Zinc/iron permease; (InterPro:IPR003689) Range:  from: 20909799    to: 20911078    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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