Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               <------ZmHOX2a(1)           <---------TOE1(2)           --------->LBD16          <-----------RAV1(2)          --------->HSFB2a(2)          <---------LBD16          <---------HSFB2a(2)      ------>NtERF2      <---------SPL7                                                                                <      <---------RAP2.6(3)                                                                      <-----      <-----------HVH21                                                                        ------     --------->DEAR3(1)                                                               ------->TEIL  <     <---------ANAC58                                                  --------->At4g35610     <-----     <---------ANAC58                                                  <---------At4g35610 <---------ANAC58   <---------At5g28300                             <---------ANAC46 <---------At4g35610    <---------ANAC46  <-----------GT1                      --------->ZAT6               --------->At4g35610    <---------ANAC58   aaatttgccgtcccaggaagagtaagtcatttgctactctctcactaagtgtctcgttgaattgtgtctgagcagcttaagctatatgtatttgctggtg  20906300         <----------DOF2        <---------ANAC58        <---------ANAC58     ---------->ID1     <---------RAP2.6(2)   ----------------------->TaNAC69(2)   <-----------RAV1(1) <----------DOF2 ---------ANAC58 ------RAV1(1) --->ALFIN1 ---------ANAC58                  <-----------RAV1(1) ----REM1(1)  <-----------GT1   ------>ZmHOX2a(1)      <----------DOF2           <-----------RAV1(1)   ttgctttgtggcttttctacttctctaaactttcctctgtggaagtaagacttgtttctttctatgtagtttcgcttatttcactggtgcaaaaaacagc  20906400                                                                                      <---------YAB1                                                  --------->MYB52(2)                 <---------AHL20(2)                                             <---------TOE2(3)                       <---------AHL20(1)                                       <---------AHL20(2)                          <---------YAB1                                   --------->AHL20(2)                           <---------AHL20(2)                                   <---------AHL20(2)                           --------->AHL20(1)                                  --------->AHL20(2)                            <---------AHL20(1)  -                                  --------->AHL20(1)                       <XXXXXXXXXXXXXXXXXXXXMIR417                                  <---------AHL20(2)                   --------->ANAC58             -                      <-----------GT1  --------->AHL20(1)              --------->ANAC58             <                 <---------At4g35610   --------->AHL20(2)     <----------DOF2   --------->AHL20(2)  <                 --------->At4g35610   <---------AHL20(1)     <---------DAG2  ------->TEIL<----------   atgtagtcgaggtttaggcagaagaaaccctacaaatttaataaattttggttatttgttttctctttttgacacgaatgaatttattatttttgttgga  20906500                 <------MYB83                 <------MYB46(1)                 ----------->GT1                --------->MYB59           --------->AHL20(2)           <---------AHL20(1)      <---------YAB1                                                           <---------AHL20(2)     <-----------GT1                                                           --------->AHL20(2)  <---------AHL20(1)                                                  --------->AtLEC2  --------->AHL20(1)                                             --------->ANAC58              <-----  --------->ARR11(3)                  <-----------GT1      ---------->DOF2     --------->AHL20(1)  <---------ARR11(3)          ----------->GT1             <---------AHL20(2)--------->YAB1  --------- -------->ARR11(3)          ----------->GT1             <---------YAB1----------->GT1      <---------GLK1(2) -------->AHL20(1)      <---------AHL20(2)         ----------->GT1  ---------->DOF2      ----------->ARR10 ---------AHL20(1)     <---------AHL20(2)     --------->AHL20(2) --------->ANAC58   <---------AHL20(2) ---------ARR11(3)     --------->AHL20(2)     <---------AHL20(2) --------->ANAC46   --------->AHL20(2) -RAV1(1)  <---------AHL20(2) <---------ZAT6--------->TOE2(3)    --------->LBD16    --------->AHL20(1)   aaaatattttcattttatttggtaaataaatagtgtaaaataacttcattaattagttattaaaagcccgaaatgcaaaaataaaataaaatagattctc  20906600                                                                     ------>MYB46(1)                                                                     --------->MYB52(1)                                                                     ------>MYB83                                                                   <---------MYB111(1)                                                                   <---------MYB46(2)                                                                   --------->MYB46(3)                                                                   <---------MYB59                                                              ------>MYB46(1)          --------->ANAC58                --------->MYB52(1)  ------>MYB83           ----------->GT1          ----------->GT1         ----------->GT1        <-----------GT1            <---------ZAT6 ----------AGL15      ----------->GT1    --------->RVE1(1) --------->DEAR3(2)       ----------->GT1 >GLK1(2) --------->ANAC58   --------->AHL20(2)   ----------->GT1  <---------MYB111(2)   ttcttggtaaacaagtaaaaaaaacagcaaaaaaaatagaaaaatatcggagtagaaataaaccgactaccaaacagtggataagagagttaaaacgagc  20906700                                                <------ZmHOX2a(2)                                          <-----------GT1                               <---------ICU4                                   <-----------GT1                                     <---------YAB1                                  <-----------GT1                                    --------->YAB1                                 *TSS <----------DOF2                           <-------TEIL                            <---------MYB52(1)  <---------ATHB12         --------->TOE1(2)   ccataaaacctgtttccaaacagtccatctgttaattttccttttctccgatcaattccaaaaccctacttcaaccctgcgattcattcatcattcacag  20906800                                                                              <------ZmHOX2a(2)                                                                              --------->GLK1(1)                                                                             <---------ARR14(2)                                                              <---------GLK1(2)                                                            ----------->ARR10--------->AGP1                                                            --------->ICU4   --------->ARR14(2)                                                          <---------------AGL15             <--------                              <------NtERF2               --------------->AGL15  <---------ANAC55(2)                            <---------ANAC46             ----------------->AGL1  --------->ANAC55(2)                            <---------ANAC58             ----------------->AGL3------>ZmHOX2a(2)                      <---------ARR14(2)             <-------GAMYB           <---------AGP1 ---------                      --------->ARR14(2)            <-----------RAV1(1)      --------->ARR11(3)            ----------------->AGL1                  <---------MYB46(3)       <---------ARR11(3)            ==============================================================MADS_MADS   --------->At4g35610            <-----------------AG                  ----------->RAV1(2)       <---------CCA1(2)          <----------ID1    <---------ANAC58  ------>ZmHOX2a(2)     ---------->DOF2   <---------At4g35610   agtttgaagaaaacgccgaaatcggaaatggcgtctattgttcttcgatctcgcctgttgccaagattagcaaagctcagatctcgtaatctgagatgtt  20906900                                                                                                   --                                                                                                 <---                                                                                                <----                                                                                                -----                                                                                               ------                                                                                              ------>NtERF2                                                                                              <------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                             <-------                                                                                             ------->GAMYB                                                                                             --------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                            ---------                                                                                            ---------                                                                                            ---------        --------->HSFC1(2)                                                                 --------->At4g35610        <---------HSFC1(2)                                                                 --------->ZAT2        --------->HSFB2a(1)                                                       ------>NtERF2<-----        <---------HSFB2a(1)                                                      --------->DEAR3(1)<-       --------->ANAC58                                                          --------->DREB2C(2)       --------->ANAC58                                                          --------->ANAC46----    --------->LBD16                                                              --------->RAP2.6(2)  <---------At4g35610                                                            ------->GAMYB<------  --------->At4g35610                  <---------LBD16                          --------->MYB46(3)---  <---------LBD16                     <---------LBD16<---------REM1(2)        <---------ALFIN1<------ -ARR11(3)                          <---------ARR14(2)                     <-----------GT1 <---------At4g35610 >ARR11(3)                 --------->REM1(1)<-----------HVH21         <---------YAB1       <---------ATERF1(1)   tctctgcggaagcatcttcgacgaattctacatctaggtattcgggagtcacctctacccagtcgatgttttctgattttccaccgccaaatcagccgcc  20907000                                      ----------->HVH21                                     --------->ATERF1(1)                                     <------NtERF2                                   <---------DEAR3(1)                                  --------->At4g35610                                  <------NtERF2                                  <---------At4g35610                                  --------->ATERF1(1)     <---------ALFIN1             --------->ZAT2   ------>ZmHOX2a(1)              <---------ZAT2  <---------ALFIN1               ------>NtERF2 ------->AtMYB61                <------NtERF2 ------ATERF1(1)                <---------DEAR3(1) -----ALFIN1                   <---------LBD16 ---->DEAR3(1)                 <---------At4g35610 --->ATERF1(1)                 --------->LBD16 ---RAP2.6(3)                  ------>NtERF2 ->DEAR3(1)                   --------->DEAR3(1) ->ANAC46                   ------>NtERF2 ->RAP2.6(2)                <---------At4g35610 --ATERF1(2)             <---------ZAT2 ->ATERF1(2)             <---------At4g35610                                      --------->ANAC58 ->ANAC58                --------->ZAT2                                           --------->ANAC58 ->RAP2.3(2)             ----------->RAV1(2)                                   <---------ZAT18 ->ANAC58------>ZmHOX2a(1) <-----------RAV1(1)                                <---------ANAC55(2) ->RRTF1(2)           --------->HSFB2a(1)                            ----------------------->TaNAC69(2) ->RAP2.3(3)          <---------HSFB2a(1)                           --------->GLK1(2) >MYB46(3)            <---------At4g35610                           --------->ARR14(2) >ERF1------>ZmHOX2a(1)  --------->At4g35610                        <---------ARR14(2)     <---------ZAT18 >RAP2.3(1)           --------->HSFC1(2)                            <---------ARR11(3)----------->RAV1(2) -NtERF2<---------ALFIN1<-----------RAV1(1)                         --------->ARR11(3)=============== --------ALFIN1       <---------HSFC1(2)     ---------->DOF2     --------->ANAC55(2)  ------>ZmHOX2a(1) -->NtERF2            <---------ZAT2<---------ATERF1(1)    --------->ARR11(3) --------->ANAC58 -----HVH21 ------>ZmHOX2a(1)--------->ATERF1(1)       ---------->DOF2        --------->ANAC58------- ------>bZIP60(2)     --------->At4g35610<---------ANAC46  <---------ARR11(3) --------->ANAC55(2)  <- ---ATERF1(1)    --------->ALFIN1<---------ATERF1(1)  <------ZmHOX2a(1)    --------->ARR14(2) -------   acctcctcctcctcctcaagtggaagctgctgccgcggctgcgacgggaaaggagaggaaaggtcttaagtatcttggttacgcactcctctgggcactc  20907100                       <---------ANAC55(2)                       --------->ANAC46                       --------->ANAC55(2)                       <-----------GT1                       --------->ANAC58                  <---------ARR11(3)       <---------HSFB2a(2)         <---------At4g35610                             --------->ARR11(3)<---------TOE1(2) ==========RAV         --------->ANAC58          --------->YAB1  ---------->ID1   --------->HSFB2a(2) -->ANAC58          <---------ARR14(2)          <-------TEIL    <-----------GT1   <---------------AtSPL8 ----------RAV1(1)  --------->ARR14(2)  ------->TEIL     <-----------GT1<---------ANAC46 -->ANAC58  <---------At4g35610     --------------->AtSPL8  <----------DOF2<---------TOE2(2)   actggtgctaccgctgctactggttacgcaagttttggtatgtacttgcattcatgaattatcttttttccctctcgtagatttctagtacaaagttgtt  20907200  Previous    Next  AGI:  At1g55890.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G13160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65949.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 20905011    to: 20906465    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g55900.1    Description:  TIM50 (EMBRYO DEFECTIVE 1860). Identical to Import inner membrane translocase subunit TIM50, mitochondrial precursor (TIM50) [Arabidopsis Thaliana] (GB:Q8VYE2;GB:Q56X01;GB:Q9LG22); similar to NLI interacting factor (NIF) family protein [Arabidopsis thaliana] (TAIR:AT1G29780.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41172.1); contains InterPro domain NLI interacting factor (InterPro:IPR004274) Range:  from: 20906733    to: 20909393    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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