Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         --------->ANAC58       --------->ANAC58       --------->ANAC46                                                   ----------->GT1   --------->MYB46(3)                                                  --------->MYB52(1)  --------->At4g35610             <----------DOF2                      ------>MYB46(1) --ARR14(2)                       --------->TOE2(3)                    ------>MYB83 ----ARR10                  <-----------GT1                   <-----------HVH21 ->GLK1(2)               <---------ICU4                    <---------MYB52(1)                  ------ ->ARR14(2)           --------->YAB1              --------->ZAT6     <---------MYB59 ---------->DOF2 -GLK1(2)            ----------->GT1            <-----------GT1      --------->AtMYB61         <-----   gatcaccagacgaaacaagtagaatgaaaattacatctttaactcataaatcacactatcagttcgtcagaccaaacagaaaatagcaaaagaacatcga  20904600                                                                                  --------->YAB1                                                <------ZmHOX2a(1)                <---------YAB1                                             --------->At4g35610             <---------MYB52(1)                                      <---------ANAC55(2)                    <---------CCA1(2)    ---                                      --------->ANAC55(2)              --------->ANAC58 <---------WRKY45 --->HSFB2a(2)                        --------->ANAC58                 --------->ANAC58 <---------WRKY38(1) ----HSFB2a(2)                        --------->ANAC58               --------->MYB46(3)<<<<<<<<<WRKY6   gaaaaacctcacatccagtagcctcagagagactattgatacgaatcagaggagtattgccaatggcatcaacaagcccgtttctcatagtcaacttctc  20904700                                                                     ----------->RAV1(1)                                                                <---------At4g35610                                                                --------->At4g35610                                                             <---------At4g35610                                                             ------>NtERF2                                                             --------->At4g35610                           ---------->DOF2                  <---------DEAR3(1)                  -----                      ----------->GT1                       --------->DEAR3(1)      --------->YAB1<--             <---------LBD16                              ------->GAMYB--------->MYB46(3)       -----             <---------HSFB2a(2) --------->At4g35610     --------->DEAR3(1) --------->At4g35610 -----             --------->HSFB2a(2)--------->GLK1(2)        --------->ANAC46  ------->GAMYB  <----------        <<<<<<<<<TBF1 --------->ANAC58                --------->MYB46(3)----------->RAV1(1)    ------  ------>ZmHOX2a(1)   --------->ANAC58        --------->ANAC58  <---------ZAT2----------->RAV1(1)---- --->ZmHOX2a(1)     --------->CCA1(2)         --------->ANAC58  --------->ZAT2------>NtERF2   <------   cttcctcttcttcttctcggagagacggaaaaagaagctgtaagaagtaagcatcaacaacgccgctgctgcaacaacagcgccagtcatattaacaggc  20904800                                                            <------NtERF2                                                           ------>NtERF2      --------->At4g35610                                  <---------DEAR3(2)   ---------->DOF2                                        <---------DEAR3(1) ---->RAP2.6(2)                                          <------NtERF2 ----NtERF2              <---------ANAC55(2)            <---------SPL7 ---->RAP2.3(2)          --------->ANAC46               <---------ATERF1(1) ---->ANAC46--------->ZAT2                         --------->MYB59 -GT1 <---------At4g35610--------->ANAC55(2)    *TSS<------MYB46(1)             <---------YAB1 --->RAP2.3(1) --------->ANAC58         --------->ZAT14<---------DEAR3(1)     --------------->AGL15-- -->NtERF2  <---------ZAT2--------->LBD16 ----------->GT1--------->ATERF1(1)  <---------------AGL15<- ---ATERF1(1)  --------->ANAC58      --------->LBD16<------MYB83     --------->ZAT6       <---------YAB1   gccattgaagctcaagctcgccttctcccgtaatcaaaccggtgaagtaaaattaggtcgtcggcaaaacaacactatttctattatttgttattctagc  20904900                                                      <---------ANAC58                                                      <---------ANAC58                          <---------ZAT18            <-------TEIL                        --------->ANAC46          --------->At4g35610                       ---------->DOF2   <---------AHL20(2)           <---------MYB52(1)           <---------AHL20(2)                               ----------->HVH21          <----------DOF2 --------->ZAT18--------->AHL20(2)  --------->ATHB12            ------>ZmHOX2a(1) ---------->CBF     --------->YAB1      --------->AHL20(2) ------>ZmHOX2a(1)           ----------->RAV1(2) -----NtERF2 ----------->GT1 <---------MYB52(2)   <---------At4g35610                  --------->At4g35610   ccccaatatttcctttagttaaaaataaggcactaacattttttaaattatcagatgcgtccttcatttgatttgttcttaaactcgtctcctgaaggct  20905000                                                                                                  <--                                                                                                 ----                                                                                                -----                                                                                                <----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                              -------                                                                                              <------                                                                                              ------>NtERF2                                                                                             --------                                                                                             <-------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                           --------->LBD16                                                                                           <---------At4g35610                                                                                           ------>NtERF2                                                                                          --------->ANAC46                                                                                          <---------ALFIN1                                                                                        ------>ZmHOX2a(1)                                                                                    <-----------GT1                                                                             ------>NtERF2--------->DEAR3(1)                                                                           ------>ZmHOX2a(2)---------                                                                           --------->MYB46(3)--------                                                                           --------->DEAR3(2)--------                                                                           ====================HOX2a_HOX2a                                                       ------>NtERF2      =====================HOX2a_HOX2a                                                  --------->LBD16         <------ZmHOX2a(2)--------->ABI4(1)                                          <---------ANAC58               --------->ARR14(2)<---------ATERF1(1)                                          <---------ANAC58  --------->REM1(1)--------->LBD16---------           *TSS              <---------ANAC58     <-----------HVH21      <---------ARR14(2)--------->At4g35610    <----------DOF2          <---------ANAC58   <---------LBD16<---------ALFIN1  <---------MYB52(1) -   gaaaccctttgctctcactcccaaaacgatgtcgtctctatctcgcgttctccgtggcaccttcaacacttgcccgatccgccgtttttcctccgccgcc  20905100 ----NtERF2 -->NtERF2 ---->DEAR3(1) -----ALFIN1 --->ERF1 -NtERF2 --->ATERF1(1) --->MYB46(3) ----ABI4(2) -->ABI4(1) ---ATERF1(1) ->RAP2.3(2) --ATERF1(2)         <-----------HVH21 ->ANAC58         --------->LBD16 ->DEAR3(1)       --------->ZAT14 ->RAP2.3(3)      <---------ZAT14 ->ATERF1(2)      <---------ZAT18 ->RAP2.6(2)     --------->DEAR3(1) ->ANAC58       --------->ANAC46 ->DREB2C(2)   ------>MYB83  --------->RAP2.6(2) ->RRTF1(2)   --------->MYB55(1) >RRTF1(1)    --------->ANAC46 >ERF1        <---------ALFIN1                                              --------->MYB52(1) >ORA47(2)   <---------ABI4(2)------>NtERF2                                <---------SPL7 >RAP2.6(1)  --------->MYB46(3)          ------>NtERF2           <---------ANAC46              ------ >ATERF1(1)  <---------MYB55(2)         --------->DEAR3(1)       <---------O2 --------->ANAC58 <----- ->RRTF1(3) --------->DEAR3(2)<---------RAP2.6(3)        -------->P       <---------ANAC58   <------- ->ANAC46  --------->PCF2    --------->RAP2.3(2)      <---------MYB52(2)  <---------ANAC58   -------- >RAP2.3(1)------->TEIL <---------At5g28300 ------>ZmHOX2a(1)    --------->O2 --------->ANAC58<------ZmHOX2a(2) -------->ZAT14------>MYB46(1)--------->LBD16  ---------->DOF2 ------------->DYT1       --------->MYB52(1)   accgtagtctccgaacccaccgcagtcactgccgcaatctcgcctcctcaaaagtcactaaccagtctcgtgaatggcgaacgaaaccccaaacggatcg  20905200                                                                               --------->ARR14(2)                                                                               <---------ARR14(2)                                                                        ------>NtERF2                                                                        <-----------HVH21                                                                       --------->RAP2.3(3)                                                                       --------->RAP2.3(2)                                                                       --------->DEAR3(1)                                                 <---------ANAC58     --------->ATERF1(1)                                          ------>MYB46(1)             --------->RAP2.3(1)                                         ----------->RAV1(1)          --------->DEAR4(2)                                      --------->SPL7                  <------NtERF2                                    --------->LBD16                   --------->ORA47(2)                                   <---------HSFB2a(2)             <---------ZAT14                                   --------->HSFB2a(2)          <---------ANAC58     ---------->DOF2                                  <---------LBD16<---------ANAC46  --------->ZAT14 --------->LBD16                                <---------ARR14(2)  --------->REM1(2)<---------ATERF1(1) >ZmHOX2a(2)              <------NtERF2--------->MYB46(3)       <---------ANAC58  --------->RAP2.6(2) ----ANAC46             <---------DEAR3(1)------>MYB83--------->SPL7 <---------RAP2.3(1)       ------ --ARR14(2)       ------->MYC3  --------->ARR14(2)  --------->ZAT14--------->SPL7--------->RAP2.3(1) ->ARR14(2)       <-------MYC3<---------MYB46(3) <---------ANAC58 --------->ALFIN1--------->ANAC46   tggagaaattcaagaaggcatgtgagtcggagcggttccggaccaacatagccgtgtacgatagaaccgtgcgccgtctcgtagccgcaaagagattaca  20905300                                                                                            <------NtERF2                                                                                            <--------                                                                    <------ZmHOX2a(2)      ------>NtERF2                                                                   --------->ARR11(3)      <---------RAP2.6(3)                                                                   <---------ARR11(3)     --------->RAP2.6(2)                                       <---------O2               <------ZmHOX2a(1)       <---------ATERF1(2)                                     ----------->RAV1(1)      <---------ANAC46            --------->ATERF1(2)                        --------->At4g35610   ---------->DOF2 --------->DEAR3(1)         --------->RAP2.6(3)                     --------->At4g35610  <-----------HVH21  ------>NtERF2               <---------LBD16                   <------ZmHOX2a(1) ------>NtERF2           <------NtERF2            --------->DAG2           --------->GLK1(2)        --------->ANAC46       <---------DEAR3(1)        ---------->DOF2          --------->ARR11(3)        ----------->HVH21     <---------LBD16      <---------AtLEC2          <---------GLK1(2)        --------->LBD16    <---------ARR14(2)   --------------->AGL15          <---------ARR11(3)    <---------At5g28300   <---------GLK1(2)    <---------------AGL15 --->ZAT6<---------RVE1(1)  <---------------AtSPL8    --------->ARR14(2)  <-----------------AGL1   ctatgtcgaagagattttggaggagcagaagaagtaccgcgacatgtcaaaagagggattcgcggcgaggatcatttctctgtatggaaaagccggcatg  20905400                                                                            --------------------->WRI1                                                               ------>ZmHOX2a(1) <---------ZAT18                                                        --------->ZAT14    <---------ANAC58        <-                         <---------ARR14(2)             <---------ZAT14<---------ANAC58          ----      --------->ZAT18    --------->ARR14(2)       <-----------HVH21    <---------ANAC58          ---- -MYB52(1)      --------->ALFIN1 --------->MYB52(1)    <-----------RAV1(1) <---------ANAC58      ----   tttgaaaatgcacagaaggtgttcgaagaaatgccaaacagagactgcaagaggtcagtgttgtccttcaatgccttgcttagtgcatatagactttcca  20905500  Previous    Next  AGI:  At1g55880.1    Description:  pyridoxal-5'-phosphate-dependent enzyme, beta family protein. similar to cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative [Arabidopsis thaliana] (TAIR:AT5G28030.2); similar to cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative [Arabidopsis thaliana] (TAIR:AT5G28030.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80713.1); contains InterPro domain Pyridoxal phosphate-dependent enzyme, beta subunit; (InterPro:IPR001926); contains InterPro domain Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site Range:  from: 20902563    to: 20904848    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g55890.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G13160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65949.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 20905011    to: 20906465    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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