Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      --------->TOE2(3)                                                                          --------->ARR14(2)                                                    <----------DOF2       <---------ARR14(2)          ------>ZmHOX2a(1)                --------->ZAT14    <---------YAB1     <---------CCA1(2)          <----------DOF2                  <---------ZAT14  <-----------GT1   <----------DOF2       ---------->ID1            <----------DOF2<---------ZAT14   <-----------RAV1(1)     -----------   tctatttatgtccttttgcaattctctgcattcttctttagtcactagagtgttctttaatatcaccattgttgcagacccttttatctcaattgtgaaa  20880000               <---------ICU4               --------->ATHB12              <---------YAB1            --------->REM1(1)    ------>ZmHOX2a(2)   --------->GLK1(1)   <---------GLK1(1)   <------ZmHOX2a(2)  --------->ARR11(3)  <---------ARR11(3)  <---------AGP1  --------->ARR14(2)  <---------ARR14(2)                              <---------YAB1  <-----------ARR10                 <---------ARR14(2)  --------->ARR14(3)                --------->ARR14(2)     ---------->DOF2                       ----  <---------ARR14(3)           <---------ANAC46 --------->YAB1             <---------TOE2(3) <------- >GT1     ----------->RAV1(1) --------->ATHB12 <---------ATHB12            <---------YAB1----------->HVH21   ccaagatctctgcaacatcattggtcatacactgagtggatttgattcaatgataatacaataaagaaatagagattaacatagctactctctgactttt  20880100      <---------ATHB12      --------->MYB46(3)     ------>MYB83                            <---------------AtSPL8     ------>MYB46(1)                         --------------->AtSPL8     -------->P                            --------->ATHB51    --------->MYB55(1)  <-------GAMYB      <---------ICU4                --------->ANAC58   <---------MYB46(2)  <---------MYB46(3)  <--------ATHB1                --------->ANAC58   <---------MYB111(2) --------->MYB55(2)  -------->HAHB4                --------->ANAC46   <---------MYB111(1) --------->MYB111(2)<---------AHL20(2)          --------->DEAR3(1)   --------->MYB46(3)<---------ANAC58     <---------ATHB51            <---------DEAR3(1)   --------->DEAR3(1)<-------GAMYB        --------->AHL20(2)       =============================HOX2a_HOX2a   --------->AtMYB61<---------MYB46(3) --------->AHL20(2)          ------>ZmHOX2a(2)   <---------MYB55(2)<---------ANAC58 --------->AHL20(2)         --------->ARR11(3)      ------>ZmHOX2a(1) ----->YAB1    <----------DOF2        <---------AHL20(2)         <---------ARR11(3)      --------->ICU4 ---DOF2 <---------MYB52(1)     ----------->GT1                <---------YAB1         ---------->ID1   catcaccaaccattagtctttttggttgttgataagataaataaataattgtactctcaaacaagatgatcgtcgacgctatctatctgtccttatttga  20880200                                        --------->TGA2(1)                                         <--                                        --------->ANAC55(2)                                      <---                                        <---------ANAC58                                         ----                                        <---------ANAC46                                        >>>>>                                        <---------TGA2(1)                                       >>>>>                                        <---------ANAC55(2)                                     -----                                        <---------ANAC58                                        -----                                        <---------bZIP60(1)                                     <----                                        --------->bZIP60(1)                                     -----                                       ----------->STF1         <---------ALFIN1                -----                                      <---------TGA2(2)       <---------ALFIN1                  -----                                     ----------->TGA1       --------->CCA1(2)                   -----                          ------------>AtMYB77              <------ZmHOX2a(2)                   >>>>>                         ----------->HVH21                 --------->ARR11(3)                   >>>>>                       --------->ZAT2<---------ATHB12      --------->ARR14(2)                   >>>>>                --------->YAB1       ----------->HVH21     <---------ARR11(3)                  ------        ----------->GT1<---------At4g35610                 <---------ARR14(2)              ----------      ---------->DOF2  --------->At4g35610                 --------->AGP1   ------------>CBF   ------   ctgaaatagaaagtagaaacatagtagctgacagttccaatgacgtaagagagtgtctcgagatccacacttgttcttgacaatgtccagagttatagcc  20880300 ----NtERF2 ------RAP2.6(3) -->NtERF2 <---------ARR14(2) >>>>AtERF-1 >>>>AtERF-2 ---->DEAR3(1) ---->ATERF1(2) -----ATERF1(2) ---->ANAC46 ---->RAP2.3(3)                                                                              <-------GAMYB ---->RAP2.3(2)                                                                           ------>NtERF2 ---->RAP2.6(2)                                                                     <---------O2 >>>>AtERF-3                                                                        ================= >>>>AtERF-4                                                                        =================MYC_MYB >>>>AtERF-5                       <---------DAG2                                   --------->O2 --->RAP2.3(1)        ----------->TBP                            *TSS               <---------TGA1a >DOF2  --------->MYB59 ---------->DOF2      ----------------------->TaNAC69(2)     --------->TGA1a --->ERF1  --------->ARR14(2)   <-----------GT1         <---------ALFIN1     <---------DAG2<------NtERF2   gccactaaattcggttcttcttgtataaaaggcttaacctttccacttgtctgagagaccacttctcttatccctctcaccttctcacttggcaccgttg  20880400                                                                     <----------DOF2                                                                ------->TEIL                                                              <---------ZAT14                                                              --------->ZAT14                                                            --------->At5g28300                ----------->GT1                          <------NtERF2             --------->YAB1                             ------>NtERF2<---------DAG2            <---------ATHB12                            --------->MYB52(1)           ------>MYB83---------->DOF2                 ----------->HVH21                     <-------           ------>MYB46(1)                             --------->DEAR3(1)                --------->MYB52(1)         <---------------AGL15                        --------->DEAR3(2)                --------->ARR14(2)         <---------MYB59         --------->LBD16     <---------At4g35610                <---------ARR14(2)        ----------------->AGL1--------->MYB52(1)  ---------->DOF2--------->MYB46(3)   ----------->ARR10 =================================bZIP_DOF    <-------TEIL<---------DEAR3(1)      <------ZmHOX2a(1) -   cagagagagaaccaaacatggtaaacaaagacgaccggattagaccggttcatgaagccgacggtgaaccgctttttgagactaggagaagaaccggtag  20880500             --------->ARR14(2)        --------->SPL7        --------->MYB52(1)      <---------SPL7                            --------->ATHB12     <---------ANAC58                   ------->TEIL                                  <---------SPL7     <---------ANAC46                   <---------ARR14(2)                           ------->GAMYB     <---------ANAC58                   --------->ARR14(2)                          --------------->AtSPL8     <---------ANAC55(2)               <---------CCA1(2)                            --------------->AtSPL3     --------->ANAC55(2)           <---------ANAC46                         <------MYB46(1)  <---------WOX13(1)             <---------ANAC46              <---------GLK1(2)  <-----------GT1 --MYB52(1) <---------MYB52(1)   <---------ANAC58    <------MYB83           <------MYB83--------->SPL7 -------->ATHB12                 <---------ANAC58    <------MYB46(1)        ----------->GT1   agtgattgcgtaccggtttttctcagcctcggttttcgtgtgtatctgtttgatttggttctacagaattggtgagattggtgataaccgtaccgtttta  20880600                                          <------MYB83                                          <------MYB46(1)                                          ----------->GT1                                         --------->MYB59                             --------->ARR14(2)                                     <------MYB46(1)                             <---------LBD16                               ----------->ARR10                         --------->LBD16       <-----                            <---------ANAC46                     <-----------ARR10 --------->LBD16                      <---------YAB1 <------MYB83            --------->ANAC58  <---------ARR14(2)                   <---------YAB1 --------->CCA1(2)          --------->ANAC58  --------->ARR14(2)              <---------MYB46(3) --------->ARR14(2)  <---------ANAC46   --------->LBD16      --------              --------->MYB52(2) <---------ARR14(2) <---------MYB46(3) <---------LBD16       <-------   gatcgattaatctggtttgttatgtttattgtggagatttggttcggtttatattgggtagtcacacaatcttcccggtggaatccggtttggcgatttc  20880700                                                                                    --------->RRTF1(3)                                                                                    --------->RAP2.3(3)                                                                                    --------->DEAR3(1)                                                                                    --------->RAP2.6(2)                                                                                    --------->RAP2.3(2)                                                                                   --------->ATERF1(1)                                                                            <---------MYB46(3)                                                                            --------->ATHB12                         --------->ANAC58                                 <---------MYB52(1)   <-----                         --------->ANAC55(1)                             --------->LBD16      <------                         <---------ANAC55(2)                           ------>ZmHOX2a(2)      <------MYB83                         --------->ANAC46                              <---------LBD16        <------MYB46(1)                         --------->ANAC58                             <------ZmHOX2a(2)      <-------                         --------->ANAC55(2)                         --------->ARR14(2)   <----------                        <---------LBD16                              <---------ARR14(2)   <---------MYB46(3)                        <-------TEIL ------>MYB46(1)                 --------->GLK1(2)   <---------MYB52(1)                       --------->CCA1(2)                            --------->ATERF1(1) <-------GAMYB                       --------->ARR14(1)                           <------NtERF2  --------->DEAR3(2)                      --------->ARR14(2)                           <---------ATERF1(1)<------NtERF2                      --------->ARR11(1)                           <---------MYB46(3)------>NtERF2                      <---------ARR14(2)                         <---------LBD16   --------->RAP2.3(1)                     --------->GLK1(1)        ----------->HVH21--------->ANAC46    --------->ERF1----                     <---------GLK1(1)  --------->LBD16        --------->ANAC58    --------->MYB46(3) ------GT1          ----------->ARR10------>MYB83--------->O2  <---------DEAR3(1) --------->At4g35610 ->GLK1(1)      <---------LBD16    --------->AtMYB61           --------->ANAC58   <---------At4g35610 --GLK1(1)<---------GLK1(2)   --------->DEAR3(2) <---------O2<---------AtLEC2 <---------WOX13(1) <---   ccttctccgatagactctctcggagatacggaagcgaccttccgaggctcgacgtcttcgtttgcacggcggatccggtgattgagccgccgttgttggt  20880800                                    ------>MYB46(1)                                    -------->P                                    ------>MYB83                                 <---------ZAT2                                    --------->MYB52(1)                           <---------At4g35610                                   --------->MYB55(1)                            --------->ZAT2                                   <---------ALFIN1                        <---------ARR14(2)                                   --------->ANAC46                        --------->ARR14(2)                                  --------->MYB46(3)                     --------->MYB55(2)                     <<<<<<<<<AtERF-3                                    <---------MYB46(3)                     <---------RAP2.3(1)                             <---------DREB2C(2)                     <<<<<<<<<AtERF-4<---------LBD16                 <---------DEAR3(1)                     ------>NtERF2<---------MYB111(1)              --------->MYB52(1)                    <---------DEAR3(1)                            ----------->TGA1    <---------ANAC58 ----ANAC46         <---------RAP2.3(3)                           ----------->HVH21   <---------ANAC58 ---MYB46(3)        <---------RAP2.6(2)                         --------->At4g35610 <---------TGA2(2) --AtMYB61          <---------RAP2.3(2)         --------->ANAC46<---------At4g35610----------->HVH21 -RAV1(1)          --------->RAP2.6(3) --------->LBD16        <-----------RAV1(2)--------->At4g35610 ------->GT1     ----------->HVH21<---------MYB55(2)   <---------CCA1(2) --------->ABI4(2)          < ------MYB46(3) <-----------HVH21 <---------MYB111(2)<---------MYB52(1) --------->ALFIN1          ---   ggtaaacacagtcttatctgtgacggctcttgactacccaccggagaaactcgccgtttatctctcagatgacggtggttctgagctgacgttctatgct  20880900  Previous    Next  AGI:  At1g55840.1    Description:  SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein. similar to SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G47730.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64059.1); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074) Range:  from: 20877268    to: 20879938    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g55850.1    Description:  ATCSLE1 (Cellulose synthase-like E1); cellulose synthase/ transferase, transferring glycosyl groups. similar to ATCSLG2 (Cellulose synthase-like G2), transferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G24000.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21198.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45145.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21196.1); contains InterPro domain Cellulose synthase; (InterPro:IPR005150) Range:  from: 20880365    to: 20883148    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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