Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       ---------->DOF2               --------->AHL20(2)<---------MYB52(1)                                              <---             <----------DOF2    ----------->GT1                                                  ----   <---------ARR14(2)          ----------->GT1  --------->YAB1                            <---------MYB52(1)  <---------CCA1(2)         ------------>MYB.PH3(1)   --------->YAB1             --------->YAB1  ----   atgcaaatctcaagactttaaatgagacagaaaccgttaaaaagaaacagtagtaatcagaaaacgtcgaaatcaaaaaaccatcatactctgttattcc  20816100                                                                                               <-----                                                                                               ------                                                                                               <-----                                     <---------GLK1(1)                                ------->GAMYB                                <---------MYB52(1)                              ------>ZmHOX2a(2)           <---------LBD16     --------->TOE2(3)                               <------ZmHOX2a(2) ------At4g35610         --------->YAB1                                       --------->ARR11(3) ----->At4g35610         --------->AHL20(2)   ---------->DOF2         <---------ANAC55(2)  <---------GLK1(2) ----->LBD16 ----------->GT1   --------->TOE1(3)            >>>>>>>>>TBF1     <---------ARR11(3)   gctgaatcagtgattcggaaaaaacaataaaaacgttagatttcgcagtaatgccgattgaagaagaacaatacggatgagatctcaaccctcgattctc  20816200                     --------->ORA47(1)                    --------->DREB2C(2)                    --------->DEAR4(1)                    --------->DEAR3(1)                    --------->At1g77200                    <---------ETT(1)                    ------->GAMYB                   --------->DEAR3(2)                   --------->MYB46(3)                                                          ------                  ------>MYB83                                                                <------ZmHOX2a(2)                  --------->MYB52(1)                                                         --------                 --------->MYB55(1)                                                          <-------        --------->ZAT6                                                         --------->TOE2(3)      --------->MYB52(1)                              --------->GLK1(1)        --------->TOE1(3)   ----------->GT1------>MYB46(1)         <---------ARR14(2)  --------->AHL20(2)           --------->ANAC58 ----LBD16  --------->ZAT14               --------->ARR14(2)  --------->YAB1  ----------------->AGL1 --->HSFB2a(2)  <---------MYB55(2)      XXXXXXXXXXXXXXXXXXXX>MIR415         <-----------GT1--------->ANAC58 ----HSFB2a(2)  --------->MYB46(3)   --------->MYB52(1)       <---------AHL20(2)      ----------->HVH21   ggaaggggtaacagtaaacccaccgacaaaccaaaaaaaaaacagaaccgaaacagaactctaattaaaactctgtttttaccttaatgtgacacgatct  20816300                                                      --------->ANAC58                                                      --------->ANAC58                                                      --------->ANAC46                                                     <-------TEIL                                                    --------->ARR14(1)                                                    --------->CCA1(2)                                               ---------->DOF2                                   <<<<                                            <---------ANAC55(2)                    --------->ANAC46                               ----------->ARR10 ----------->ARR10                 --------->ANAC58                  --------->HSFB2a(2)       --------->ANAC46                       --------->ANAC58                  --------->LBD16 --------->GLK1(2)<---------ARR14(2)            --------->MYB46(3) <      --------->ZAT6      --------->CCA1(2) --------->ANAC58                  <----------ID1<-------- --------->HSFB2a(2) ---------->DOF2        --------->ANAC58                --------->ANAC58<-------- >ZmHOX2a(2)      <---------HSFB2a(2)       --------->ANAC55(1)             --------->ANAC58--------- ->ARR11(3)   <---------ARR14(2) --------->ARR14(2)--------->ARR14(2)     ---------->DOF2  <------ZmHOX2a(1) --ARR11(3)   --------->ARR14(2) <---------GLK1(2) --------->ARR11(1)---------->DOF2   ---------->DOF2   cttcgataactctccaaatccgagaaagatagagagattctcaaacacgcaaagatacgaaagtttgcagagaaagtaaagcaacaagcaaaaggattct  20816400                                                                           --------->O2                                                                           <---------O2                                                                           <---------ANAC58                                                            --------->ARR11(3)                                                            <---------AGP1 <---------TGA1a                                                        =============================bZIP_DOF                                                        ---------->DOF2    ==========================                                                       =============HOX2a_HOX2a                                               --------->LBD16             --------->TGA1a                                              <---------ANAC46------>ZmHOX2a(2)                                             <-------TEIL   <---------ARR11(3)      xxxxxxxxxxxxxxxx>smallRNA(i)                                          --------->GLK1(1) --------->AGP1 <---------ANAC46                                          --------->At4g35610<------ZmHOX2a(2)     xxxxxxxxxxxxxxxx>smallRNA(i)                                          <---------At4g35610--------->CCA1(2)    <---------MYB46(3)   <<<<<<<<<TBF1            <------ZmHOX2a(1)<---------LBD16--------->ARR14(2) --------->ALFIN1 <<<<<TBF1       --------->YAB1           <---------GLK1(1) <---------ARR14(2) <-----------RAV1(1) <<<<<<<<TBF1    --------->ATHB12        ----------->ARR10----------->ARR10<---------ANAC58<<<<<<<<<TBF1 -ARR14(2)       <---------ICU4     --------->DAG2     <------ZmHOX2a(1)   =============MYC_MYB -GLK1(2)       <---------YAB1     ---------->DOF2     ==============HOX2a_HOX2a<-------GAMYB >ARR14(2)      --------->ICU4     ==================================================bZIP_DOF   <----   tcttcttcttcttagacgatgattacacgaggatgcaaaaagggagatgcggagagaggaaagatctgaaatttctcgcgtgtgttgttgttcttcttct  20816500                                                  <-----------GT1                                              --------->AHL20(2)                                             --------->AHL20(2)                                             <---------AHL20(2)                <----------DOF2          --------->AHL20(2)              --------------->AGL15      --------->AHL20(1)              <---------------AGL15      <---------AHL20(2)         <----------DOF2--------->ARR14(2)  --------->AHL20(2)      *TSS <-----------GT1               <---------AHL20(1)         <----------DOF2---------->DOF2    <---------At4g35610 <---------ARR14(2)  <---------AHL20(2) <----------DOF2   <---------YAB1 ===================bZIP_DOF        --------------->AGL15 <----------DOF2  <-------TEIL    --------->AHL20(2) -----CCA1(2) ======================================MADS_MADS <------------------------ANAC81     <--   atcttctgcttctttactcttttgagttttcgctactacttaataaattaatatactcttcttttcttttcttttggttcattttgaaagaaaaaaaatt  20816600                               >>>>>>>>>>>>>>>>>LFY                             <------MYB83                             <---------ANAC58                             <------MYB46(1)                             <---------ANAC58                            <---------MYB46(3)                    --------->ZAT14                 <---------ANAC46                 <---------ANAC58                                                                  <-       <------MYB83 <---------ZAT14                 --------->ZAT18                                <-       ----------->GT1      --------->MYB59         <---------ZAT18                                <-       <------MYB46(1)  <---------ZAT6        --------->YAB1                                      <--      --------->MYB59 <---------ANAC46    --------->ICU4 --------->MYB52(1)   ---------->DOF2    <---      --------->MYB46(2)<-----------RAV1(1)  <---------YAB1               ---------->DOF2     <------NtERF2 <---------TOE2(3)  --------->REM1(2)     ------>ZmHOX2a(1)     ---------->DOF2      <---------ZAT14 --------DOF2    <---------ANAC58   <---------ATHB12<---------ZAT14   ----------->GT1--------->ZAT18   ctttaggtttggtaatattgtgtgtagtgttgggtccaatggtccttatcagagtgaacaaatggagaaagaaggtaaaagaaagtgtgcattggcagcg  20816700                                                                                --------->ATHB12                                                                            <---------AHL20(2)                                                   ------>ZmHOX2a(1)        --------->ATHB12                                                   <----------DOF2          --------->ATHB51         <---------DAG2                         ---------->ID1              -------->HAHB4         <----------DOF2                    --------->ANAC55(2)             -------->ATHB1    <---------At4g35610                     <---------ANAC58                <---------ICU4 -----MYB46(1)                              <---------ANAC58               <---------YAB1       ----- --------MYB46(3)                           <---------ANAC55(1)            <---------ATHB51     <---- -----MYB83                                 <---------ANAC46               --------->ICU4       <---- -------AtMYB61      <---------MYB52(1) <---------ANAC58                --------->AHL20(2)      ----- ------MYB52(1) <-----------GT1         <---------ANAC58                <---------AHL20(2)     ------   ttggtcagtagctttttgttacccttggtctgtctctattttgcatgcgtgtccttttcttcccccatgagtatttaattattgatttcaatgtctaata  20816800       ----------->RAV1(1)   --------->ANAC46   --------->ANAC58   --------->ANAC58             --------->TOE2(3) <-----------GT1                --------->TOE1(3) ---->AHL20(1)          <---------ANAC58 -----AHL20(2)          <---------ANAC58                           <---------AHL20(2) -----AHL20(1)       <----------DOF2           --------->YAB1      --------->AHL20(2)              <- ---->AHL20(2)    <-----------GT1------>ZmHOX2a(1)    ----------->GT1  <-----------GT1       <------- --->AHL20(2) ------->TEIL   <-----------GT1  <---------YAB1  <---------AHL20(1)       >>>>>>>>>>>>>>   aattcaccccaacatgtatataactttcgtttttccttagaatttgttttcataaactgtttaatatgttttaataccacatttgttttccccagtgtca  20816900                                                 --------->AHL20(2)                                    <---------YAB1                                <---------AHL20(2)                                --------->AHL20(2)         --------->GLK1(2)      <---------YAB1            --------->YAB1   <---------AHL20(2)  --------->TOE2(3)      --------->ANAC58       --------->YAB1 ----------GT1           --------->ANAC58      <---------YAB1 ----HVH21           <-----------GT1<---------AHL20(2)--------->ZAT18 >>>LFY  <----------DOF2 --------->ANAC46   <---------MYB52(1)                        ---------->DOF2   tttacattattcttttttttttgttacaagtcatttatattattctgttattaaaatgcacaatctgtattctgtagtattttgttttgaaagcatgtag  20817000  Previous    Next  AGI:  At1g55690.1    Description:  SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein. similar to transporter [Arabidopsis thaliana] (TAIR:AT5G56160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45191.1); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074) Range:  from: 20811929    to: 20816506    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version