Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   ------>MYB83              --------->ANAC55(2)              <---------ANAC55(2)    --------->YAB1  --------->ANAC58                                       --------->ANAC58  --------->ANAC58                                     --------->MYB46(3) --------ATHB12  ------>MYB46(1)                       ---------->DOF2 ----->WOX13(1)<---------MYB111(1)         --------->YAB1--------->ANAC58                      ------ ->ZAT18      --------->ANAC46             <-----------GT1                            --------->TOE1(2) --ZAT18      --------->ANAC55(1)         <---------YAB1 --------->ANAC46       <------ZmHOX2a(2)  --   aatcaagcatgaaaacacctaatagattacgactccatgagattataacaatctccaacaagcaaatcgctcagaaacaaggatcaaacctgcaatctat  20811200                                       <---------DDF1                                       ----------->RAV1(1)                                      --------->DREB2C(2)                                      >>>>>>>>>>DREB1C                                      --------->At1g77200                                      >>>>>>>>>>DREB1B                                      >>>>>>>>>>DREB2A                                      ------->GAMYB                                    --------->MYB52(1)                       --------->LBD16>>>>>>>>>>AtTINY2                     <---------AHL20(2)                      --------->HSFC1(1)                                    <---------ICU4                      --------->HSFB2a(2)                                  --------->AHL20(2)               <-------TEIL       <---------MYB52(2)                     --------->YAB1               ----------------->AGL2 >>>>>>>>>>DREB1A                  --------->AHL20(2)          ---------->DOF2    --------->AtMYB61                        ------>MYB46(1)          ------        <---------YAB1<---------HSFB2a(2)                             ------>MYB83      --------->ANAC58 --------->AtSPL8     <---------HSFC1(1)                      --------->ANAC58          --------->ANAC46 ------->ZAT18 ----------------->AGL1--------->DEAR3(2)       --------->ANAC58          --------->ANAC58   gtacacaaatatcaaagtccatttccagaaaccaaaactaccgacataatcgaagatgggagaaacgaaaccaaataataaatacttcacaagcctcctc  20811300                                                                                            ---------                                                                                            <--------                                                                            <---------TOE2(2)                  ----------->GT1                                           <---------TOE1(2)                  --------->YAB1                                          --------->TOE2(2) ---------                 <---------ATHB12                                         --------->TOE1(2) <--------                ------>MYB83                                      <------NtERF2             ---------                ------>MYB46(1)                  --------->ANAC58----------->GT1          <----------              --------->MYB46(3)                 --------->ANAC58--------->LBD16         <-------TEIL            -------->P                           ----------->GT1<---------DEAR3(1)     <---------GLK1(2)            ------>MYB46(1)                 <------ZmHOX2a(1)   <---------ANAC46 ------>ZmHOX2a(2)  - >ZmHOX2a(1)------>MYB83                 <---------LBD16       <---------LBD16<------ZmHOX2a(1)     -   aagaacacaaaccctaccaatcgtaaaattcgattccaaaaactcaggaacaagaaaaaatcagaggcggagaaaacctaggatcgatagattcacctgg  20811400                                        <---------HSFB2a(2)                                     --------->ARR14(2)                     <-------TEIL                                 ----------------->AGL2                  --------->At4g35610                                --------->At4g35610                      --------->ZAT2 >ZAT2                          <---------At4g35610       --------------->AGL15                ------ -O2                        <-----------HVH21       <---------YAB1       <---------At4g35610  <------ZmHOX2a(2) -->RAV1(2)                 <-----------TGA1   --------->DAG2            <---------ZAT2      -------- -At4g35610               <-------TEIL  --------->HSFB2a(2)           <---------ANAC58       <------- >At4g35610             <---------ARR14(2)    --------->DAG2          <---------ANAC58 --------->YAB1 -GT1                   --------->ARR14(2)   ---------->DOF2     <---------TOE2(3)    <---------YAB1 -------->ANAC58        <---------GLK1(2)--------->LBD16  <---------------AGL15     --------->YAB1 -------->ANAC58   --------->MYB52(1)<---------ARR14(2)  ----------------->AGL3 --------->AHL20(2)   cgaagcaactcgtgcaattgaaaacggattcgtcagccaaatccagaaaaaggtatgattctaaattaagtttcgagctgcataaattatcatcggatcg  20811500                    --------->MYB52(1)          <---------ZAT14 <---------ANAC58 --------->ANAC58 <---------ANAC58 --------->ANAC58 >ZmHOX2a(2)   <---------ZAT18   >>>>>>>>>TBF1 ->ARR14(2)    --------->ZAT14------------------------>ANAC81                            <---------AHL20(2) --ARR14(2)    <---------ZAT14>>>>>>>>>TBF1                                  <------ZmHOX2a(1)   atttcgagcgagtccagagcacgaacggagaagaagaagaagagagagagagagagagagagagagagagagagagagaggaatagcgaaatttatcttc  20811600                                                         <---------ANAC55(2)                                              ------>ZmHOX2a(1)                                          <-----------GT1--------->ANAC55(2)                                    <---------AHL20(2) <-----------GT1             --------->AHL20(2)                            <-----------GT1  <---------------AGL15        <-----------GT1         ---------->DOF2  <---------AHL20(2) --------->TOE2(3)   <-----------GT1   <---------AHL20(2)      *TSS   <------ZmHOX2a(1) <---------YAB1--------------->AGL15       <-----------GT1------------>CBF   gttcacagtggaaaaggacggtctctattttttctgatttaaaatttccttattttgttacttattttgacggttttacccttatataattccaatacag  20811700                                                  <---------YAB1                                                <--------HAHB4                                                <---------ICU4                            --------->TOE1(3)                                               <---------YAB1                             --------->TOE2(3)                                             --------->YAB1                              <---------ICU4                        <----------DOF2 <---------ATHB12                           --------->YAB1                      ---------->ID1    <---------YAB1                            <---------YAB1 ----               <----------DOF2 --------->ATHB12--------->ICU4   <---------YAB1    <---------ATHB12 --  <---------YAB1 <---------MYB52(1)     --------->ICU4     --------->TOE2(3)    --------->YAB1 ------   ggttctgattacgagggctgttttgtctttatctcattggccatcattcattattatgcaaccttgatgatatatcaaactctaatcataaacattaaca  20811800                               --------->AHL20(2)                               <---------AHL20(2)    --------->ARR14(2)    <---------YAB1        --------->AHL20(2)    <---------ARR14(2) --------->GLK1(2)        --------->YAB1<----------DOF2 ----->At4g35610      --------->ARR14(2)        <---------AHL20(2) ----->GAMYB          <---------GLK1(2)   --------->ANAC55(2)<---------ANAC58 --->MYB46(3)         <---------ARR14(2)<-----------GT1      <---------ANAC58     <---------GLK1(2)   actgcaaatccacttgaaatatcagattctgatataaatgttttacttaataatatagtttttgctttcatgttaaacaaaatggattcttcagagactc  20811900                                                                               --------->ZAT14                       --------->ARR11(3)   --------->ARR11(3)                 <---------ZAT14                      --------->CCA1(1)     <---------ARR11(3)          <---------ANAC58           --                      --------->RVE1(1)    <---------GLK1(2)            <---------ANAC58      -------                 --------->YAB1       <-----------GT1            --------->ZAT14         <----------ID1                <---------YAB1      --------->CCA1(2)            <---------ZAT14    <---------ICU4 <-             --------->ICU4        --------->ARR11(3)            <---------ZAT18   --------->ICU4 ===          <---------YAB1           <---------ARR11(3)     <---------At4g35610  <---------REM1(2)  <--   aagagtgtttttctcattatcaaaataccttgggaaagatttacaaaatctcatttgtttagcttagtgtagtttcttatctacactgattacaacaaaa  20812000                                     <---------ICU4   <------MYB83                --------->TOE2(3)              <---------GLK1(2)   <------MYB46(1)             --------->YAB1             <---------YAB1 ------->ARR14(2)    ------>ZmHOX2a(2)                    --------->At4g35610            <<<<<<<<<TBF1 --->DOF2     --------->GLK1(2)>>>>>>>>>RAP2.2   <------ZmHOX2a(1)<----------DOF2     <<<<<<<<<TBF1 --------ARR14(2)    ===================================HOX2a_HOX2a            <---------ARR11(3) ===========================HOX2a_HOX2a<---------YAB1   --------->YAB1         --------->ARR11(3) --- ----ZmHOX2a(1)     --------->GLK1(1)--------->YAB1<---------WOX13(1)    <-----------HVH21    <------   ggatttggtttttaaaattctgatctctctcaatctaaattatcacagacaggattgatcatcagagtctttctctgtcactatcttcttcttcttcttt  20812100  Previous    Next  AGI:  At1g55680.1    Description:  WD-40 repeat family protein. similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G56190.1); similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G56190.2); similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G13340.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66839.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 20808258    to: 20811606    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g55690.1    Description:  SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein. similar to transporter [Arabidopsis thaliana] (TAIR:AT5G56160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45191.1); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074) Range:  from: 20811929    to: 20816506    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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