Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   ================HOX2a_HOX2a                                                       <---------TOE1(2)         ------>ZmHOX2a(1)                                                     <---------SPL7       <---------SPL7           <-                                                     --------->TOE1(2)   <---------ANAC58          --                                                    <---------HSFC1(2)   --------->ANAC55(2) --------                                                    ====================================HOX2a_HOX2a<-                                                    --------->HSFB2a(1)  <---------ANAC58  --------->YAB1                 --------->ANAC58                   <---------HSFB2a(1)  <---------ANAC46 <------ZmHOX2a(2)                 --------->ANAC46                   ------>ZmHOX2a(2)   --------------->AtSPL3     -- ->MYB52(1)      --------->ANAC58  <xxxxxxxxxxxxxxxxxsmallRNA(fl3)     <---------TGA2(2) <---------ARR11(3)   atgtgtccaatagaaccccaagcaagaacatcaacaatgttgaatccaattggatcgttcgatttcaagagactgacgtactccttagcacgatcatctc  20806700                                 --------->ANAC58                                 --------->ANAC58                                --------->SPL7                               <--------P                             --------->LBD16                           <---------LBD16                        <---------At4g35610                                          <------NtERF2                        --------->At4g35610                                --------->ANAC46                    <---------ARR14(2)                                     --------->ANAC58                    <---------MYB52(1)                                     --------->ANAC58 --------At4g35610  --------->ARR14(2)                                  <----------ID1  <------ZmHOX2a(1) ------->At4g35610<---------ANAC58                              <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ->At4g35610      <---------ANAC58                         --------->HSFB2a(2)  --------->MYB46(3) --------ZAT2   <-----------GT1---------->DOF2             <---------HSFB2a(2)--------->MYB52(1) ------->ZAT2  <-----------GT1<---------MYB52(1)          <---------LBD16 <---------------------WRI1   cagcttcgaaatgggtttttccgttctgctccggtaagccctgttttgctacgttctctctctggaagttgaagaagacgaaacggccgaggaagaggga  20806800                                                                             <--------P                                                                             <---------WOX13(1)                                                    --------->At4g35610     <-------GAMYB                                                    <---------At4g35610    --------->MYB55(2)                                                    <---------LBD16       --------->ALFIN1                                               --------->O2               <---------AtMYB61                                               --------->ANAC58          <---------MYB52(1)                                               =====================================MYC_MYB                                               ----------->HVH21       --------->LBD16                                               =======================================MYC_MYB       <                                               --------->TGA1a<---------ARR14(2)                  ---                                               --------->ANAC58       <---------LBD16            ----                                        --------->At4g35610   --------->ARR14(2)                 <---                 ----------->TGA1       <---------At4g35610   <-----------ARR10                <-----      --------->ZAT2                    <---------ZAT2        --------->ARR11(3)            <------MYB46(1)      <---------ZAT14                   --------->ZAT2       <------ZmHOX2a(1)              <------MYB83      --------->ZAT14              --------->At4g35610    <------ZmHOX2a(1)<---------MYB46(3)  ------      <---------ZAT2<---------YAB1 <---------At4g35610  --------->ALFIN1--------->LBD16    --------->SPL7      <---------At4g35610      <---------ANAC58<---------TGA1a<---------ARR11(3)          <--------P<      --------->At4g35610      <---------ANAC58--------->ANAC46      <---------LBD16      --------->ALFIN1   gagacctgtgctgagacttatgacgatggaagggcttagctcagctctcacgacagcggaggaggattttctcccggtggttgatagtttgggtagggcg  20806900                                                                                       <------MYB46(1)                                                                                       <------MYB83                                                                                      <---------MYB46(3)                                                                                      --------->MYB55(2)                                                                                      --------->MYB111(1)                                                                                      <---------AtMYB61        ------>NtERF2                                                                 <---------DEAR3(1)       <---------ALFIN1                                                               --------->MYB46(2)      --------->ATERF1(1)                                                             --------->MYB111(2)     <---------ATERF1(1)                                                             <--------P   <------ZmHOX2a(1)                                                                 <---------MYB55(1)   --------->ATERF1(1)                                                             <---------MYB46(3) --------->ALFIN1                                                                 --------->ALFIN1 xxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------>ALFIN1              --------->ANAC58                              --------->ZAT14 ----->ATERF1(1)            --------->ANAC58                             --------->ALFIN1 ---NtERF2           ----------->HVH21                                 <---------ANAC46<---------MYB46(3) ----DEAR3(1)        <----------ID1                       <-----------RAV1(1)  --------->GLK1(2)----- --->ALFIN1         --------->ATERF1(1)            <---------TOE1(3) --------->ZAT14 <--------------- ------ZmHOX2a(1) --------->ALFIN1                 <---------TOE2(3) <---------ZAT14<-------GAMYB  <-   gaggaggagccacctagacggaggggacgaaggccatggaatgagatggagttagggtttttgtgggagattgcagtggagaatgtggttggtgagagca  20807000                                                                                                   <-                                                                                                  ---                                                                                                  <--                                                                                             <-------                                                                                         ------>ZmHOX2a(2)                                  <<<<<<<<<TBF1                                         --------->At4g35610                               <<<<<<<<<TBF1                                           <---------ARR11(3) ----->DOF2                 <<<<<<<<<TBF1                                              --------->ARR11(3) ------WRI1            <---------ANAC58<---------HSFB2a(2)              <---------MYB46(3)----------- --------At4g35610     <---------ANAC58--------->HSFB2a(2)          --------->ATHB12 <---------YAB1<-   aagctgatgcgcttgtggccattttgcttcttcttcttcttctctaagaaaaatttcagtaatagaaaaatgagtggttttggatttatgatctgaaggt  20807100                                                       --------->CCA1(2)                                                      <---------ARR14(2)                            <                                           <---------YAB1                                           -                                       <---------ARR14(3)      <---------TOE2(3)           <------MYB83        --------->GLK1(2)              --------->ARR11(3)      <---------ANAC46            <---------DEAR3(2)       <---------ARR14(2)              <---------ARR14(2)      --------->ANAC55(2)         <---------MYB46(3) -----MYB83       <-----------RAV1(2)  <---------ARR11(3)      <---------ANAC55(2)        <---------TOE2(2) ------>MYB59    <---------ZAT2        <---------GLK1(2)      <---------LBD16             <---------TOE1(2) -------AtMYB61 --------->ANAC58     ----------->ARR10--------->ARR11(1)                 <---------MYB52(1) --TOE1(3)      --------->ANAC58--------->At4g35610   --------->ARR14(2)  <---------bZIP60(2)      <- >HVH21<---------GLK1(2)     --------->At4g35610     <------ZmHOX2a(1)    <---------REM1(1)<------MYB46(1) -----MYB46(1) *TSS  <------ZmHOX2a(1) --------->ARR14(3)<---------YAB1   <-----------RAV1(1)   <----   ttggttttggattctggcaagcaggagaagaagcagaagaagattttgtttgtgaggatacgattacggatggatgatgtggcattctctcgttggttct  20807200                                                                        <---------MYB111(1)           <---------GLK1(2)                                            --------->TOE1(2)           --------->ARR11(3)                                 <----------DOF2   <----------DOF2       <---------YAB1                                     <-------TEIL------->TEIL ---------HSFB2a(2)           <---------ANAC46           --------->CCA1(2)   --------->ARR11(3) -------->HSFB2a(2)           <---------ANAC58          <---------ARR14(2)------>MYB83 --------LBD16   ---------->DOF2                        --------->ARR14(2)------>MYB46(1)    <------- ------DOF2<---------ARR11(3) <---------ANAC58         <------ZmHOX2a(1)<---------MYB59      --------   ttctggattatgagattttcaaagaaatatttgcgttcaaacccttgtaatttagtaggatacactttgaagaacctactatcttttttttaaaagattt  20807300                                                                 ----------->GT1                                                              <-----------RAV1(1)                                                          <---------ANAC58                                                --------->AHL20(2)                       <----------DOF2          <---------AHL20(2)          <---------ALFIN1         --------->DAG2         <---------ANAC58            --------->ARR11(3) --ARR11(3)     --------->YAB1    ---------->DOF2    --------->YAB1              <-----------GT1 ->ARR11(3)  <----------DOF2   --------->YAB1   <---------AHL20(1)            <---------ICU4  <------   agtccataatctacactttaatagtcttttttctcataaagtgtttgtattttatttataacttgtgttgtaaaaactcaatattacaggtcttgataca  20807400                                                                                ----------->GT1                                                                                <---------At4g35610                       <-----------GT1                                          --------->At4g35610               ------->GAMYB                                                   --------->ANAC58     -              <---------MYB55(2)                                       <---------TOE2(3)            =              --------->MYB46(3)                                   ------>ZmHOX2a(1)   <---------ICU4              <---------MYB52(2)                                   ==================================              <------------MYB.PH3(2)                             --------->TOE2(3)   --------->AHL20(2)             ------>MYB46(1)                       <---------ATHB12<----------DOF2    <---------AHL20(2)             ------>MYB83                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <---------ATHB51            ----------->RAV1(1)               ----------------->AGL1   <---------TOE1(3)            =  ------->TEIL<---------MYB111(2)         ---------->DOF2  --------->YAB1      --------->ANAC58   <-- -TEIL    --------->MYB46(3)       --------->MYB52(1)<---------HSFB2a(2) <------ZmHOX2a(1)    ------>NtERF2   tatgaaactaaaaccaacaaacttataaccataggcccaacgagaaaagcccaatcgagaaacataatcctttaaggaagtaagctaaataattcccgac  20807500        ------->MYC2        <-------MYC2        ------->MYC4        <-------MYC4        <-------PIF5        ------->PIF5        ------->MYC3        <-------MYC3       <---------PIF3(3)                                                                 ------->GAMYB       <---------ANAC46                                                                --------->MYB52(1)       --------->TGA1a                                                                 -------->P       <---------TGA1a                                                                --------->MYB55(1)       <<<<<<<<<<HY5                                                                  ------->GAMYB       --------->PIF3(3)                                                             <---------MYB111(2)       <---------O2                 <---------ANAC58                                 <---------MYB55(2)       --------->O2                 --------->O2                                     <---------MYB52(2)       =============================bZIP_DOF                                       ----------->RAV1(1)    ---------------->PIF3(2)        <---------ANAC46                      ------>ZmHOX2a(2)  --------->ANAC58                  <---------bZIP60(2)                  <------ZmHOX2a(2)  --------->ANAC58                  <---------O2                   --------->DEAR3(1)--------->MYB46(3) --------->DOF2                     <---------TGA1a            <-------TEIL      --------->At4g35610 ================bZIP_DOF           <---------ANAC58          <---------MYB52(1) <---------At4g35610 ================bZIP_DOF --------->DAG2               <-----------HVH21<---------ARR14(2)          - ================bZIP_DOF---------->DOF2               <-----------TGA1 --------->ARR14(2)--------->LBD16 -------ZAT14            =====================bZIP_DOF--------->ANAC46--------->DEAR3(1)<---------LBD16   tgcaaagccacgtggaatgctaacaaataaagttgaagacgtggatagatgattcttcgtcaccgttcatcgccgatctgttcagcaacaaccggaaaac  20807600  Previous    Next  AGI:  At1g55670.1    Description:  PSAG. Identical to Photosystem I reaction center subunit V, chloroplast precursor (PSAG) [Arabidopsis Thaliana] (GB:Q9S7N7;GB:Q42310); similar to unnamed protein product [Vitis vinifera] (GB:CAO66840.1); contains InterPro domain Photosystem I reaction centre, PsaK subunit (InterPro:IPR016370); contains InterPro domain Photosystem I psaG/psaK protein; (InterPro:IPR000549) Range:  from: 20806336    to: 20807115    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g55675.1    Description:  unknown protein Range:  from: 20807370    to: 20808239    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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