Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      <---------ARR11(3)        <----------DOF2                                  <---------TOE2(3)         ------>MYB83                              --------->At4g35610           ------>MYB46(1)                       <---------ANAC58                   <---------MYB59       ----------->GT1 <---------ANAC58             --------->ARR14(2)      <---------MYB46(3)      <---------At4g35610   <---------ARR14(2) -------PIF5        --------->GLK1(2)              <------ZmHOX2a(1) ------>PIF5       <---------GLK1(2)--------->ARR11(3)   --------->DEAR3(2) ------->ANAC46   <---------HSFB2a(1)--------->GLK1(1)  <---------At5g28300                      ---- ------AtLEC2     --------->HSFB2a(1)--------->CCA1(2) <-----------GT1                         <-----   cacgtcgatgggtaaatgaaagattccttggctgctaagatatcaattcacgaggatttaccgactttaaaccaaaatagcattagtttttagagtgtaa  20767300                             -------->ATHB1                             <---------ICU4                            --------->ICU4                            <---------AHL20(2)                            <---------ATHB51                            --------->AHL20(2)                      --------->YAB1                     <---------YAB1                                                <----------DOF2                     ----------->GT1                                               <---------DAG2                     --------->ICU4                                             <-----------GT1                   -------->HAHB4                                           --------->ATHB12                   --------->YAB1                                           -------->HAHB4                  --------->ICU4                                            <--------ATHB1                --------->YAB1 <---------YAB1                              <---------ATHB12             --------->ANAC55(2)                                           --------->ICU4      --------->TOE2(3)  <---------AHL20(2)                       --------->AHL20(1)   ----------->RAV1(1)-------->HAHB4                              <---------AHL20(1)  --------->REM1(1)<---------ICU4         <---------ICU4          --------->AHL20(2) ------->GT1 <---------ANAC55(2)  <-----------GT1 --------->TOE2(3)        <---------YAB1 ------GT1  <-------TEIL --------->AHL20(2)       --------->TOE1(3)<---------AHL20(2)         <------   cgttacaacataaatacataataatgataaattattaaactacataattaagccttaatttgttagaatataatgtaatgattcacttttctaaaatcat  20767400                                                                         <---------YAB1                                                                  <---------ANAC46                                                                  =============================bZIP_DOF                                                                  <---------ANAC58                                                                  <---------TGA1a                                                                  --------->O2                                                                  =============================bZIP_DOF                                                                  <---------ANAC58                                                                  --------->TGA1a                 <--                                                   ---------->DOF2<---------O2                    ---                                                --------->At5g28300--------->TOE1(2)              ---                                   ---------->DOF2 =========================bZIP_DOF              <--                                   =========================================bZIP_DOF            -----   --------->AHL20(2)      <---------YAB1     --------->ZAT6     <-------TEIL            <----------DOF2 ---ICU4----------->GT1<---------GLK1(2)--------->GLK1(2)     <---------At4g35610   <----------DOF2<-   ttcaaatatttagaaaaattagatagattatgaaaaaaaaagaatttgacagtaaaagttattaagctacgtgggattatagtaaacttttcttttaaaa  20767500                                                    <------MYB83         ---------->DOF2                            <------MYB46(1)      --------->TOE1(3)                             <---------DEAR3(2)                              -      --------->TOE2(3)                            <---------DEAR3(1)                               <     --------->ZAT6        <---------YAB1          <---------MYB46(3)                               -   <-----------GT1     <---------ARR14(2)          --------->MYB59                                  < -------ATHB51         --------->ARR14(2)         <---------ORA47(1)                                - ------>ICU4           <---------GLK1(2)        <------MYB46(1)                            <---------AHL20(2) ------>AHL20(2)      <------ZmHOX2a(1)         <------MYB83                             --------->AHL20(2) -------AHL20(2)    <---------TOE2(3)        <---------ANAC58                            <---------AHL20(2) ---->YAB1     --------->ZAT2                <---------ANAC46                          ----------->TBP --------ICU4  <---------ZAT2    ------->TEIL<---------ANAC58           --------->TOE2(3)----------->TBP   ataattaaccctaaaccagcttgaggattctcatggacccttcaattgcttggtcggtccaacttcatctctatccataaaactatgttatatatatatg  20767600                                                  --------->ANAC58                                                  --------->ANAC46                                            -------->HAHB4                                            --------->YAB1       --------->ANAC58                    <---------YAB1                              --------->ATHB51       --------->ANAC58                  --------->YAB1                             <---------AHL20(2)      ------->MYC2                      <---------YAB1                          --------->ICU4      <-------MYC3                     --------->AHL20(2)                     --------->YAB1      <-------MYC2                     --------->AHL20(1)                     --------->AHL20(2)      ------->MYC3                     <---------AHL20(2)                    *TSS<---------ICU4  <---------ZAT14                      <---------AHL20(1)              ----------->GT1 <---------ICU4 -------->ZAT18                       --------->YAB1                  ----------->GT1 <---------YAB1 ---------ZAT18                      <---------YAB1------------>CBF   <---------TOE2(3)--------->ATHB12 -------->REM1(2)                 <---------AHL20(2)           <-----------RAV1(2) --------->AHL20(2) ---------ZAT14    <---------ANAC46 --------->AHL20(2)   <-----------GT1    --------->AHL20(2) -------->ZAT14    <---------ZAT6--------->YAB1   --------->ANAC58  ---------->DOF2--------->ICU4   -   tgtgtacacatgctatagctagtgtggattatctataatattataataatacaagcaatataccttcaggtaaaggaaaataatatttattattgccatt  20767700                                             --------->ANAC58                                             --------->ANAC58                                     ---                                --------->ATHB12                       <---------ANAC58          <---                              --------->GLK1(2)          <---------CCA1(2)           --------->ARR14(2)                         ---------->DOF2   ---------->DOF2   <----------DOF2         <---------ARR14(2) --------->DOF2------>ZmHOX2a(2)<--------HAHB4     <----------DOF2     <---------ANAC58  ------>ZmHOX2a(1)   gaaaaagactcatttgatcgagagagaaaaagaatcatttgaaccaaaagcatctttttctatcttttcaaatgcttacttccttcaaatcctctagctc  20767800                                                                                  ===================                                                                            ------>NtERF2                                                                        ------->GAMYB                                                                        --------->AtMYB61                                                                       --------->MYB46(3)                                                                   <---------At4g35610                                                                   <------NtERF2  --------->TGA1a                                                                   --------->At4g35610                                                                  --------->RAP2.3(2)                                                                  --------->ANAC46--------->bZIP60(1)                                                                  --------->ANAC58--------->ANAC46                        --------->DEAR3(1)                        --------->ANAC58<---------bZIP60(1)                        <---------ALFIN1                          --------->RAP2.6(2)                        --------->AtMYB61                    ------>ZmHOX2a(1)  <---------ALFIN1                       --------->MYB46(3)       <---------AtLEC2------>NtERF2--------->ANAC46                       <---------MYB55(2) <----------DOF2 ------>ZmHOX2a(1)--------->ANAC46              --------->MYB46(3)          ==================================================bZIP_DOF              <------NtERF2         ------>ZmHOX2a(1)  <---------ATERF1(1) <---------ALFIN1       --------->HSFB2a(1)      --------->ARR14(2)     ------>NtERF2<---------ALFIN1    --------->LBD16  --------->AtMYB61 ------>ZmHOX2a(1) <---------ALFIN1  --------->DEAR3(1) ------>ZmHOX2a(1)  --------->MYB46(3)<---------ALFIN1--------->DEAR3(1)====================MYC_MYB --->ZmHOX2a(1)    -------->P   --------->GLK1(2)XXXXXXXXXXXXXXXXXXXX>MIR408--------->LBD16  <------- ------ALFIN1------>NtERF2      <---------ARR14(2) --------->DEAR3(1)<---------ALFIN1   --------->DEAR3(1)   ctcctccgaagatgccaccgctaccaccaccgagaatcctcctcctttgtgcatcgcctcctcctcggccgcaacctccgcctcacatcacctccgtcgt  20767900                                             --------->At4g35610                                             ------>NtERF2                                             <---------At4g35610                                    -                                            --------->RAP2.3(2)                                   <--                                            --------->DEAR3(1)                                   <---         --------->At4g35610               --------->RAP2.3(1)                                -------         <---------At4g35610              --------->ABI4(1)                            --------->MYB52(1)        --------->DEAR3(1)                ------>NtERF2                               ----------->HVH21      <---------At5g28300                --------->DEAR3(1)                  --------->ZAT6  <-------     <-----------GT1<---------ANAC58     --------->ANAC46                <---------MYB52(1)  ------>NtERF2 <----------DOF2<---------ARR14(2)      --------->MYB46(3)              --------->TOE2(3)   --------- ===========bZIP_DOF<---------ANAC58   <---------At5g28300              --------->TOE1(3)--------->ANAC46 --MYB52(1) ------>NtERF2     --------->WRKY18(1)                  ------>ZmHOX2a(1)  ------>ZmHOX2a(1)   cttcttttcaccgctgcgaatttcgtctcccagtcaaacttcaccgccgctcaaaacttactctcaatcctctcccttaactcttctcctcacggcgact  20768000                                                                                                  ---                                                                                         --------->ALFIN1                                                                                        ------->MYC2                                                                                        <-------MYC2                                                                                        <-------MYC4                                                                                        <-------MYC3                                                   <-----------TGA1                     ------->MYC3                                                   <-----------HVH21                    <-------PIF5                                                  ------->GAMYB                         ------->PIF5                                                  ===============================================MYC_MYB                                                 --------->MYB46(3)                     ------->MYC4                                         --------->ANAC58                              <---------O2                                        --------->SPL7 <---------At4g35610             --------->TGA1a                                       --------->SPL1(1)             <---------DEAR3(1)<---------TGA1a                                       <---------SPL1(1)            --------->RAP2.6(3)--------->O2 -                                      <---------SPL1(2)--------->At4g35610             <---------PIF3(3)        <---------ANAC46              <---------SPL7<---------MYB52(1)   ----------->HVH21       <--- --------->DEAR3(1)                  <---------ANAC58 --------->ANAC58 <---------At4g35610      <---- -------->ANAC46                     <---------ANAC58 --------->ANAC58 --------->At4g35610  --------- -------ALFIN1            ---------->DOF2--------->ANAC58----------->RAV1(1)           --------->PIF3(3) ------ZAT14         --------->ZAT14<---------------AtSPL3        ----------->HVH21    <---------ANAC46 -->ATERF1(1)        <---------ZAT14--------------->AtSPL3      <------ZmHOX2a(2)      <<<<<<<<<<HY5- --ATERF1(1)  <---------ALFIN1      --------------->AtSPL8     <---------ARR11(3)   ---------------->PIF3(2) >DEAR3(1)   <---------ZAT18      ------------------>SPL14     --------->ARR11(3)  <-----------------PIF3(1)   ccaccgagcgacttgtacacctcttcactaaagccttgtccgtacgaatcaaccgtcagcaacaagatcagacggctgaaacggttgccacgtggacgac  20768100     ----------->TGA1     ----------->HVH21 ------>MYB52(1) -------->ANAC58 ------SPL7 -----MYB52(2)         --------->ANAC46 >SPL7               <---------ALFIN1                  --------->ARR11(3)                           < -------->ANAC58<-----------GT1               ---------->DOF2                     <---------ICU4 ----   gaacgaaatgacgatgagtaactccacggtgttcacgagcagtgtatgcaaagaacagttcttgtttcgaaccaagaacaacaattctgacttcgagtct  20768200  Previous    Next  AGI:  At1g55580.1    Description:  LAS (LATERAL SUPPRESSOR); transcription factor. similar to RGL2 (RGA-LIKE 2), transcription factor [Arabidopsis thaliana] (TAIR:AT3G03450.1); similar to hypothetical protein [Capsella rubella] (GB:CAC36387.1); contains InterPro domain GRAS transcription factor (InterPro:IPR005202) Range:  from: 20767677    to: 20769418    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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