Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --      --------->YAB1                                                                               -- --------->YAB1                    <---------HSFB2a(2)                     --------->ANAC58        -- --------->AHL20(2)            <----------DOF2                             --------->ANAC58---------- ---------ATHB51   ---------->DOF2 --------->HSFB2a(2)              --------->WOX13(1)    --------->YAB1 ---------ATHB12  --------->AHL20(2)             ---------->DOF2 --------->TOE2(3)       <---------YAB1   caataatatcaaaatgtcaataaaagaaaatgactttatagaagagaaatgaaaagggttttgaaatcgtcaatcgcaaaccagaacatttatcaaagta  20734500                                                       <------MYB46(1)                                                       <------MYB83                                                      <---------AtMYB61              <---------ANAC58                                                      --------->MYB59                <---------ANAC58     ----------->GT1                           <----------DOF2                  <-----------ARR10     --------->YAB1                     --------->CCA1(2)                       <---------ARR14(2) ------->ANAC46                        --------->ARR11(1)    <---------ARR14(2) --------->GLK1(2) ------->ANAC58                        <---------ARR11(3)    --------->ARR14(2) --------->ARR14(2) ------->ANAC58      ---------->DOF2   --------->ARR11(3) --------->ETT(1)     <---------GLK1(2) >DOF2   ---------->DOF2           ---------->DOF2    <---------MYB46(3)---------->DOF2   gacgaaatcgtaaaagtttacaacaaagtcatcgattcaaagatatgagcttttgtttggtcggattcaaaatcgaaagaagaatctgcgttccatcttg  20734600          ---------->DOF2       --------->TOE1(3)       --------->YAB1               ---------->DOF2                                                --       --------->TOE2(3)       ----------->GT1                                              --------- --------->TOE2(3)      ---------->DOF2                   <---------DAG2             <---------ARR14(2) --------->TOE1(3) <---------RAP2.6(3)   --------->MYB52(1)<----------DOF2       --------->At4g35610   aaaccctaaccataaatcagccgttttaaagaaacgataaaagtaacagaaattagcaaaccttttgagtcttgttgttcgatagcagaaaccgagaagc  20734700                                                                                               <-----                                                                                              -------                                                                                      --------->ANAC58      <---------REM1(1)                                                               --------->ANAC46 --------->GT1            --------->ARR11(3)                             <----------DOF2---------->DOF2 ->DOF2                  <------ZmHOX2a(1)                 ---------->DOF2            --------->ANAC58   acagaaaaatgtagcgacgatgaagaaggattttgagttttgaaaattgaagaagatgagaaaaagagagggtttctttgttttatgtacgaaaggagga  20734800                                                                                              =======                                                                                              ------>ZmHOX2a(1)                                                                                              =======                                                                                           ==========                                                                                           ------>ZmHOX2a(1)                                                                                           ==========                                                                                         ============                                                                                         ------>ZmHOX2a(2)                                                                                        =============                                                                                        =============HOX2a_HOX2a                                                                                        <------ZmHOX2a(2)                                                                                       --------->ARR11(3)                                                                                       <---------ARR14(2)                                ---------->DOF2                                   ---------->DOF2        --------->ANAC58    >>>>>>>>>TBF1   ---------->DOF2            ----------->GT1 <---------ARR11(3)        --------->ANAC58 ------------------------>ANAC81           --------->ANAC46    --------->ARR14(2)     <---------SPL7 ------------------------>ANAC81 <------ZmHOX2a(1)---------->DOF2  <------ZmHOX2a(1) -ZmHOX2a(1)       --------->DAG2 ----------->GT1--------->CCA1(2) --------->ANAC58   =============== ---->GT1         ---------->DOF2 ------------------------>ANAC81  --------->ANAC58   ===============   gaattgtcgtaagaaattagaaaagtagaagaagaaaagaaaaaaaaaaagataggagagagtttatccaagaaagaaaaaatgaaaaggatcctcctct  20734900                <---------GLK1(1)         ------>ZmHOX2a(1)       --------->HSFC1(2)       <---------HSFC1(2)       ------>ZmHOX2a(2)      <------ZmHOX2a(2)     --------->ARR11(3)     <---------ARR11(3)     --------->ARR14(2)     <---------ARR14(2)     --------->AGP1     <---------GLK1(2)  --------->HSFB2a(2)  <---------HSFB2a(2)  <---------CCA1(2)                                                      <------ ============HOX2a_HOX2a                                                                      <------ =============HOX2a_HOX2a                                        <----------DOF2              ------- =============HOX2a_HOX2a                                   <---------At4g35610           --------->HSFB2a(2) ============HOX2a_HOX2a                         *TSS       --------->At4g35610     <---------AHL20(2) ===============HOX2a_HOX2a                      --------->TOE2(3)      <---------AHL20(2)<---------HSFB2a(2) ===============HOX2a_HOX2a           --------->ALFIN1   <---------At4g35610  <---------At4g35610 <-- =============HOX2a_HOX2a           <-----------RAV1(1)  --------->At4g35610  --------->At4g35610 === ============HOX2a_HOX2a   <----------DOF2     <---------YAB1    <---------DAG2     --------->AHL20(2)   tcttccagatccttctgggtttctcatttcttttctctctgtgggtcttattcttaattagctgctccttttttttaatcagctcattaattccagtaga  20735000                  <-------MYC3                  ------->MYC3                  ------->MYC2                  <-------MYC2                  ------->MYC4                  <-------MYC4                 --------->ANAC55(2)                 <---------ANAC55(2)                                                               <-                 =====================================bZIP_DOF                                     --                 =================================================bZIP_DOF            --------->ATHB51                 <---------TGA1a                                                      -------->ATHB1                 --------->TGA1a                                                      <---------ICU4                 <---------O2                                                        --------->AHL20(2)                 ==========================bZIP_DOF                                  <---------AHL20(2)   <---------HSFB2a(2)                                                            <---------AHL20(2)   --------->HSFB2a(2)------->TEIL                                                --------->AHL20(2) ---ZAT18        --------->O2              <----------DOF2             <----------DOF2--------->ATHB12 ---ZAT14 --------->TOE2(3)            <---------ZAT18                 <---------DAG2--------->ICU4-- -->ZAT14--------->YAB1     <---------GLK1(2)          <---------------AGL15  ----------->GT1      <- --------DOF2  <---------ALFIN1 <----------DOF2        <----------DOF2<----------DOF2<---------ATHB51 ==========================bZIP_DOF <-----------RAV1(1)--------------->AGL15 <---------TOE2(3)  <----   cttttctacaaacatcaacacgtgtacttggattctttttgtgggcttttaagtatacttttattagatgggcctttttgatgttaaattattggatagg  20735100            --------->ATHB12            <---------ICU4            --------->YAB1           <---------YAB1                                              --------->CCA1(2)         --------->YAB1                                               --------->ARR11(3)    <-------- --------HSFB2a(1)                   --------->ZAT18       <------ZmHOX2a(2)                <-------- ------->HSFC1(2)                    <---------ZAT18      --------->ARR11(3)                --------- ------->HSFB2a(1)           <-----------GT1   <---------ZAT18        --------->AHL20(1)    <-------- --------HSFC1(2)       --------->AHL20(2)     --------->ZAT18       --------->AHL20(2)    <---------LBD16 --ZmHOX2a(1)        --------->AtMYB61   ---------->DOF2  <---------ARR11(3)              --------->MYB52(1)   aagtttcttatttatgattaccaccaaaaaataacattgtccacaaaggtgctctctctagatcatccaaaatatatggagttttgttgaaattacggat  20735200                      ------->TEIL                     --------->MYB52(1)                             --------->ANAC55(2)             --------->GLK1(1)                                      <---------ANAC58  --------->ZAT6          --------->LBD16                                           <---------ANAC55(2)       --------->MYB52(1)                                           <---------ANAC58<-----------GT1 - -ANAC55(2) --------->ARR14(2)                                      <---------ANAC55(1)             - -ANAC46<---------LBD16               ----------->HVH21        <------MYB83------>ZmHOX2a(1)--------- >ANAC55(2) <---------GLK1(2)         ----------->TGA1         <------MYB46(1) ====================== -TOE2(3)--------->HSFB2a(2)     <---------REM1(1)             ----------->GT1 ------>ZmHOX2a(2)  <--   gaattctactaccggaatttcatgaacggctcgtgatgtagtgacggtattactacaatcccatttggttacatgtcctgatcgttttactctataacaa  20735300                          --------->AHL20(2)              ------->GAMYB                                            <---------ARR11(3)             --------->DEAR3(1)<-----------GT1                         --------->ARR14(2)    -------- -------->ANAC58          <---------AHL20(2)                           --------->ARR11(3)    -------- -------->ANAC58    --------->ARR11(3)                                 <---------ARR14(2)--------->ANAC46 >YAB1       --------->ANAC46 --------->AHL20(2)                  ---------->DOF2        --------->ANAC55(1) ====HOX2a_HOX2a    <---------ARR11(3)           ------------------------>ANAC81         --------->ANAC58 ----ZmHOX2a(1)    --------->GLK1(1)    <---------ALFIN1      ---------->DOF2            --------->ANAC58   ggacgacacatatcaacgccgaaatcttttaatttactatctccacttgcaaaccaaaaacataaaaagaaagtatctccattccatttacacgcaagaa  20735400  Previous    Next  AGI:  At1g55530.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G56340.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22124.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 20732848    to: 20734949    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g55535.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13420.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22125.1) Range:  from: 20735312    to: 20737663    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version