Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-                                                                                             --------                                                                                            ---------                                                      ----------->GT1              --------->LBD16 --                            --------->MYB52(1)      <------ZmHOX2a(1)             <---------HSFB2a(2)                          <---------MYB52(2)----------->HVH21                     <---------ANAC46 <-                     <---------TOE2(3)      ----------->TGA1                      --------->HSFB2a(2)                <------ZmHOX2a(1)         --------->At4g35610      <---------MYB52(1)      ----------               --------->ICU4             <---------At4g35610     --------->LBD16----------------->AGL1 ---------GT1 <---------TOE2(3)           --------->CCA1(2)     <---------LBD16  <---------LBD16   --   aaactattccaagagtaaggattaagaaactaacagaagtagagagatgacgaaggaggttttatcaccggaagtttttggtttccggataagaaaaggg  20722800                                                     <----------DOF2    --------->ANAC58                            <------MYB46(1)    --------->ANAC58                            <------MYB83 --------At4g35610                              <---------HSFB2a(1) ->DAG2    ---------->DOF2      ------>ZmHOX2a(1)  <-------TEIL >DAG2  --------->ANAC58       *TSS             <---------HSFC1(2)<---------MYB52(1) ------->At4g35610   <------MYB83        <---------ANAC58 <---------TOE2(3)                         < --------ZAT2        <------MYB46(1)     <---------ANAC58 <---------TOE1(3)                        <- >DOF2  --------->ANAC58    <-----------GT1     --------->HSFB2a(1)              <----------DOF2  <-- ------->ZAT2       --------->MYB59      <---------ANAC46<-----------GT1 <----------DOF2    <--------   gagctgaagcaaggaaaggaagtaggtttatctccttactctcgcttggaaggtgcttttaacgttcccttacctctttcaagctttgagttaatcttgg  20722900                                 <---------AHL20(2)                          <------ZmHOX2a(2)                      ------>ZmHOX2a(1)                      --------->LBD16                     <---------LBD16                                        ------>ZmHOX2a(1)                    ------>ZmHOX2a(2)                                       =========================                   <------ZmHOX2a(2)                      <---------YAB1    <---------------AGL15 ---------MYB52(1)--------->ARR14(2)         <---------ARR14(2)     ------>ZmHOX2a(1) ------GAMYB      <---------ARR14(2)      ----------------->AGL1   XXXXXXXXXXXXXXXXXXXX>MIR868 -------MYB46(3)  --------->ARR11(3)      <-----------------AGL1   --------->TOE2(3)                - -ICU4        <---------LBD16    --------->AHL20(2)   <----------DOF2      <---------MYB59        ---   ccgttggattcaactcttcggatcctggatcagatttatattgggcctatttgggcctttattcttgctccttaattcctaacaatggaattggaatcag  20723000                                                          <---------ICU4                                                         --------->ICU4                                    <---------------------WRI1                                --------->ATHB12         <---------------AGL15        <---------ANAC58                               --------->AHL20(2)      --------->YAB1            <---------RVE1(1)        <---------AHL20(2)     <---------AHL20(2)      --------->AHL20(2)        <---------CCA1(1)    <---------AHL20(2)     --------->LBD16        <------ZmHOX2a(1)             --------->ARR11(3)    --------->AHL20(2)   <---------LBD16       --------->HSFB2a(2)    <---------AHL20(2)        ----- ========================================================================MADS_MADS    <---------ANAC58 -------->ICU4          <-----------GT1        <---------LBD16      <---------YAB1    <---------ANAC46 ------>YAB1           <-----------GT1         <---------HSFB2a(2)<---------ZAT6<---------ARR11(3)---   tgatatttattttaaaaattgattttttcccgattaattgcgaaattttcgaggaaataatatttatagtattattttgtgagatatttcgtagtgacta  20723100              <---------ANAC46         <-----------RAV1(1)        <---------TOE2(3)                                                                      ------     <---------YAB1                                                  --------->AHL20(2)       <------ZmHOX2a(2)     <---------AHL20(2)                                   ----------->GT1                    <-------    --------->YAB1                                       --------->DAG2                      --------    --------->TOE2(3)  <---------TOE2(3)                 <---------------AtSPL8              <-------  <---------AHL20(2) ---------->DOF2                    --------->DAG2                       -------- --------->YAB1 ----------->GT1                  ----------->GT1     --------->AHL20(1) --------->DAG2 ------>GT1   <---------ANAC58             --------->MYB52(1)       --------->YAB1 ----------->TBP ------>YAB1  <---------ANAC58   <---------AHL20(2)    ---------->DOF2 --------->YAB1  ---------->DOF2   gtataatattaatgtggctggaataaaggaagtattttaaaaaaaaaacgatggagaaaaaggtaaacaaaaataatagaaaaatataaaaaagggatct  20723200                                                                              <---------YAB1                                                                           <---------ARR14(2) >ZmHOX2a(2)                                                               --------->ARR14(2) --ARR11(3)                              *TSS                            <---------RAP2.3(1) ->ARR11(3)                            <---------DAG2                   <---------ANAC46 --ARR14(2)                            <----------DOF2                  <---------RAP2.6(2) ->ARR14(2)               --------->MYB46(3)        ------>ZmHOX2a(1)  <---------LBD16   tggaggtatttgaatcaaatcgaggtgaacgaacaaaaccacttttgcctcttcctcttcttctctcttctcttgcggctacgattcaatctcttaaacc  20723300                                                                                --------->YAB1                                                                            ------>ZmHOX2a(2)                                                                           <------ZmHOX2a(2)                                                                          --------->GLK1(2)                                                                          --------->ARR11(3)                                                                          <---------ARR11(3)                                                                          --------->ARR14(2)                                                                          <---------ARR14(2)                                                                       --------->ANAC58                                                                       --------->ANAC58                                                                  --------->ANAC46                                                                  ----------->HVH21           ------>NtERF2                <----------DOF2                                <---------ARR11(3)          --------->At4g35610             <---------ARR11(3)                                --------->ARR14(2)          <---------At4g35610             --------->ARR11(3)                    <---------YAB1 <---------ETT(1)<---------YAB1 <---------GLK1(2)                       ---------->ID1        <---------ARR14(2)<-----------GT1   ctagattccttctgagttcttttttgctctgatatttgtgtttgtctcaaactcttattgttcaatatccgacaaggatctattatcagtcttcgctgcc  20723400                                       <---------ARR14(2)                                       <---------ARR11(1)                                       --------->ARR14(2)                                      <---------CCA1(2)                                    ==============HOX2a_HOX2a                                    ====================================HOX2a_HOX2a                              <---------ZAT2                              <---------At4g35610                              --------->At4g35610                             ==============HOX2a_HOX2a                             ------>ZmHOX2a(1)                           ----------->RAV1(2)           <----------DOF2                      -------                          ------>ZmHOX2a(1)      <----------DOF2                <---------ARR11(3)                          =================HOX2a_HOX2a<-----------GT1           --------->ARR11(3)                 <-----------RAV1(1)------>ZmHOX2a(2)---------->ID1      <----------DOF2<-------TEIL                 ======================RAV ------>ZmHOX2a(1)     ------>ZmHOX2a(1)------>ZmHOX2a(2)   --------->ZAT14       <---------ALFIN1  <----------DOF2       ========================HOX2a_HOX2a   aactctgttctcatgtctactgttgctcctcctgctgatcgtatcctttgcctttgtttcttttctccttcatttcttttgtgatctacgttcatgaatc  20723500                                                                                                   --                                    --------->bZIP60(1)                                          ----                                    <---------bZIP60(1)                                       -------    <----------DOF2                 <---------TGA2(1)                                      --------->STY1(2)   <---------ANAC58                 --------->TGA2(1)   <---------MYB52(1)                 <---------STY1(2)   <---------ANAC58 <-------TEIL --------->ICU4       <---------YAB1          <-----------GT1 ------- >TEIL   --------->YAB1   ----------->GT1      <---------MYB52(1)         ------->TEIL ------>ZmHOX2a(1)   tagttgcttcatcgtaattcgattcatatagtgaaatgatgtcatttccatttgttctgtttgttttagctcgatgaatttgactgttcctgtagctagc  20723600                                                                                            ---------      --------->AHL20(2)                                                                    <--------      <---------AHL20(1)                                                                 <---------HSFC1(2)      --------->AHL20(1)                                                                 --------->HSFC1(2)      <---------AHL20(2)                                                                 --------->At4g35610     --------->AHL20(2)                                                                  <---------At4g35610 --------->GT1                                                                          --------->GLK1(2) ------>DOF2               --------->AHL20(2)                                         <---------At4g35610 -->ANAC58     ----------->GT1                                                      <---------HSFB2a(2) -->ANAC58 --------->ATHB12<---------AHL20(2) --------->CCA1(2)                     --------->HSFB2a(2)   aaagtgaataaattgattagaaaaatcaattttttagtcttgctgaagatagaaacctatttgtttccttcacttacattgttttttcagaagctgctga  20723700  Previous    Next  AGI:  At1g55490.1    Description:  CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding / unfolded protein binding. Identical to RuBisCO large subunit-binding protein subunit beta, chloroplast precursor [Arabidopsis Thaliana] (GB:P21240;GB:Q9SAV2); similar to ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G56500.1); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G13470.1); similar to ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G56500.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO22112.1); similar to RuBisCO large subunit-binding protein subunit beta, Range:  from: 20719229    to: 20722831    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g55500.1    Description:  ECT4. similar to ECT2 [Arabidopsis thaliana] (TAIR:AT3G13460.4); similar to ECT2 [Arabidopsis thaliana] (TAIR:AT3G13460.2); similar to ECT2, protein binding [Arabidopsis thaliana] (TAIR:AT3G13460.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96645.1); contains InterPro domain YT521-B-like protein (InterPro:IPR007275) Range:  from: 20723241    to: 20726399    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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