Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                --------->bZIP60(1)                              --------->ANAC58                           --------->WRKY12                      ---------->DOF2<---------AHL20(2)                                        ------              --------->ALFIN1<---------bZIP60(1)                                        --------->CCA1(2) --------->MYB46(3)--------->At5g28300 <-----------GT1                                  <---------ARR11(3) -->ATHB12  --------->ALFIN1  --------->ANAC58                                 --------->ARR11(3) ->MYB46(3) <-----------RAV1(1)------>NtERF2                                   <---------ARR11(3) --ATHB12  --------->ARR11(3) --------->ANAC46  ---------->DOF2   <---------At4g35610   --------->ARR11(3)   tgaaccaatagaagatgtggcagtgaaagttgacgccattttatccacttcaaagacagacaaaattcagcacttagataagatttcaaagatataaaaa  20722400                                                                 <---------At4g35610                                 --------->YAB1                  --------->At4g35610                                <---------ATHB12                --------->ANAC58                               --------->ANAC58         --------->ANAC58                               --------->ANAC58         --------->ANAC58                 ------->GAMYB                           --------->ZAT6               -------->P    ----------->GT1   --------->MYB46(3)                      --------->At5g28300             <---------MYB111(2)   --------->AHL20(2)                      <-------GAMYB                   <---------MYB55(2)    --------->AHL20(1)                 <---------ARR14(2)                   --------->MYB46(3)    <---------AHL20(2)                 --------->ARR14(2)         ---------->DOF2     --------->ANAC58        <---------MYB52(2)      <----------DOF2----------->GT1   --------->MYB52(1) ------->GAMYB     <---------AHL20(1) ---->DOF2    <---------------AGL15  --------->AHL20(2)------->GAMYB---------->DOF2<-----------GT1 --   agactcttcttttcatctatatacggttaacacaatcaatataacagaaagaaacaacaacccagtaagctaaagtaataaattttcacaacaaaccaga  20722500          --------->TOE1(2)        ------>NtERF2       <---------ALFIN1                                                               --------->ANAC46      <------NtERF2                                                          <-----------GT1      --------->ATERF1(1)                                                --------->AHL20(1)     <---------ATERF1(1)                                                 <---------AHL20(2)     ------>NtERF2                                                       --------->AHL20(2)    ----------->HVH21  <---------At4g35610                          --------->AHL20(2)--------->ANAC58 --------->DAG2        --------->At4g35610<-----------GT1--------->ZAT6 --------->AHL20(2) -------->DOF2 ---------->DOF2--------->YAB1  --------->GLK1(2)  --------->TOE2(3)    --------->ANAC58   agaaaggcgacaccttcgaaagcagagctcaataagaacacaattgacaatctgaagaaacactaatccataaattttattacaaaacacccaaaatcat  20722600                                                                                                  <--                                       <---------GLK1(2)                                      <------ZmHOX2a(1)                         ---------->DOF2                    <-------TEIL<-----------RAV1(1)<---------At4g35610   ggaagtaatgaactaatacaagttttcaaaagcttacaacaaattcttatccaaacaaaacatacacacataaactgtggcactaaaaaatgcagaggat  20722700                                                                                                   <-                                                                                             --------                                                                                            ---------                                                      ----------->GT1              --------->LBD16 <-                            --------->MYB52(1)      <------ZmHOX2a(1)             <---------HSFB2a(2)                          <---------MYB52(2)----------->TGA1                      --------->HSFB2a(2)                     <---------TOE2(3)      ----------->HVH21                     <---------ANAC46 --                <------ZmHOX2a(1)         --------->CCA1(2)        <---------MYB52(1)      ----------               --------->ICU4             <---------At4g35610     --------->LBD16<---------LBD16   -- ---------GT1 <---------TOE2(3)           --------->At4g35610   <---------LBD16  ----------------->AGL1   aaactattccaagagtaaggattaagaaactaacagaagtagagagatgacgaaggaggttttatcaccggaagtttttggtttccggataagaaaaggg  20722800                                                     <----------DOF2    --------->ANAC58                            <------MYB83    --------->ANAC58                            <---------HSFB2a(1) --------ZAT2                                   --------->HSFB2a(1) ->DAG2    ---------->DOF2      ------>ZmHOX2a(1)  <-------TEIL >DAG2  --------->ANAC58       *TSS             <------MYB46(1) --------At4g35610   <------MYB46(1)     <---------ANAC58 <---------TOE2(3)                         < ------->ZAT2        <------MYB83        <---------ANAC46 <---------TOE1(3)      <----------DOF2   <- >DOF2  --------->ANAC58    <-----------GT1     <---------HSFC1(2)<---------MYB52(1)              <-- ------->At4g35610  --------->MYB59      <---------ANAC58<-----------GT1 <----------DOF2    <--------   gagctgaagcaaggaaaggaagtaggtttatctccttactctcgcttggaaggtgcttttaacgttcccttacctctttcaagctttgagttaatcttgg  20722900                                 <---------AHL20(2)                          <------ZmHOX2a(2)                      --------->LBD16                      ------>ZmHOX2a(1)                     <---------LBD16                                        <---------------AGL15                    ------>ZmHOX2a(2)                                       ------>ZmHOX2a(1)                   <------ZmHOX2a(2)                      <---------YAB1    ========================= ---------MYB52(1)--------->ARR11(3)         <---------ARR14(2)     ------>ZmHOX2a(1) ------GAMYB      --------->ARR14(2)      <-----------------AGL1   --------->TOE2(3) -------MYB46(3)  <---------ARR14(2)      ----------------->AGL1   XXXXXXXXXXXXXXXXXXXX>MIR868      - -ICU4        <---------LBD16    --------->AHL20(2)   <----------DOF2      <---------MYB59        ---   ccgttggattcaactcttcggatcctggatcagatttatattgggcctatttgggcctttattcttgctccttaattcctaacaatggaattggaatcag  20723000                                                          <---------ICU4                                                         --------->ICU4                                    <---------------------WRI1                                --------->ATHB12         <---------------AGL15        <---------ANAC46                               --------->AHL20(2)      --------->YAB1            <---------RVE1(1)        <---------AHL20(2)     <---------AHL20(2)      --------->AHL20(2)        <---------CCA1(1)    --------->AHL20(2)     --------->LBD16        <------ZmHOX2a(1)             --------->ARR11(3)    <---------AHL20(2)   <---------LBD16       --------->HSFB2a(2)    <---------AHL20(2)        ----- ========================================================================MADS_MADS    <---------ANAC58 -------->ICU4          <-----------GT1        <---------HSFB2a(2)  <---------YAB1    <---------ANAC58 ------>YAB1           <-----------GT1         <---------LBD16    <---------ZAT6<---------ARR11(3)---   tgatatttattttaaaaattgattttttcccgattaattgcgaaattttcgaggaaataatatttatagtattattttgtgagatatttcgtagtgacta  20723100              <---------ANAC46         <-----------RAV1(1)        <---------TOE2(3)                                                                      ------     <---------AHL20(2)                                              --------->AHL20(2)       <------ZmHOX2a(2)     <---------YAB1                                       ----------->GT1                    <-------    --------->TOE2(3)                                    <---------------AtSPL8              --------    --------->YAB1     <---------TOE2(3)                 --------->DAG2                      <-------  <---------AHL20(2) ---------->DOF2                    --------->DAG2                       -------- --------->YAB1 ----------->GT1                  ----------->GT1     --------->AHL20(1) --------->DAG2 ------>GT1   <---------ANAC58             --------->MYB52(1)       --------->YAB1 ----------->TBP ------>YAB1  <---------ANAC58   <---------AHL20(2)    ---------->DOF2 --------->YAB1  ---------->DOF2   gtataatattaatgtggctggaataaaggaagtattttaaaaaaaaaacgatggagaaaaaggtaaacaaaaataatagaaaaatataaaaaagggatct  20723200                                                                              <---------YAB1                                                                           --------->ARR14(2) >ZmHOX2a(2)                                                               <---------ARR14(2) --ARR11(3)                              *TSS                            <---------RAP2.3(1) ->ARR14(2)                            <---------DAG2                   <---------RAP2.6(2) --ARR14(2)                            <----------DOF2                  <---------ANAC46 ->ARR11(3)               --------->MYB46(3)        ------>ZmHOX2a(1)  <---------LBD16   tggaggtatttgaatcaaatcgaggtgaacgaacaaaaccacttttgcctcttcctcttcttctctcttctcttgcggctacgattcaatctcttaaacc  20723300  Previous    Next  AGI:  At1g55490.1    Description:  CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding / unfolded protein binding. Identical to RuBisCO large subunit-binding protein subunit beta, chloroplast precursor [Arabidopsis Thaliana] (GB:P21240;GB:Q9SAV2); similar to ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G56500.1); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G13470.1); similar to ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G56500.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO22112.1); similar to RuBisCO large subunit-binding protein subunit beta, Range:  from: 20719229    to: 20722831    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g55500.1    Description:  ECT4. similar to ECT2 [Arabidopsis thaliana] (TAIR:AT3G13460.4); similar to ECT2 [Arabidopsis thaliana] (TAIR:AT3G13460.2); similar to ECT2, protein binding [Arabidopsis thaliana] (TAIR:AT3G13460.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96645.1); contains InterPro domain YT521-B-like protein (InterPro:IPR007275) Range:  from: 20723241    to: 20726399    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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