Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <---------ZAT18         --------->ZAT18   <-----------RAV1(1)  ------>ZmHOX2a(2) --------->CCA1(2) <------ZmHOX2a(2) -------->ARR11(3) -------->AGP1                                                                     --------->At4g35610 ---------ARR11(3)                                                                --------->DEAR3(1) ---------AGP1                                  <---------ARR14(2)              <---------At5g28300 -------->ARR14(2)  <---------AHL20(2)          --------->ARR14(2)      <---------HSFB2a(2) ---------ARR14(2)<---------ANAC55(2)     --------->ANAC58              --------->HSFB2a(2) -------->ARR10   --------->ANAC55(2)     --------->ANAC46       <---------At4g35610             <--- ->GT1  --------->PCF5    ---------->DOF2 --------->ANAC58       ----------->RAV1(2)         <-------   tagatctgtggtccacaagtatgtaattgaaagaagtttgtagcacccaagaactggtttaagactcatctgttccaaaactcaccgctcaatctgttag  20717000                                  <-----------ARR10                                  <---------ARR11(1)          <------NtERF2                                  --------->GLK1(2)          ------>NtERF2                                  <---------ARR11(3)         ----------->RAV1(1)                                  <---------ARR14(2)        ----------->HVH21                                  --------->ARR14(2)      ------>NtERF2                                  --------->ARR11(3)      <---------ATERF1(1)                            ------>ZmHOX2a(2)           <---------ANAC58                           <---------GLK1(1)            <---------ANAC58                          <---------AGP1                <---------ANAC46            <-----------ARR10                          --------->ARR11(3)           <---------LBD16  <---------ICU4                   --------->ATHB12  <----------DOF2<---------ANAC58  --------->GLK1(2)                <-----------------AGL3    --------->LBD16--------->LBD16--------->YAB1                <-----------------AGL2  ----------->RAV1(2) <---------ETT(2)        --------->GLK1(2)     ----------->GT1      <---------ARR11(3)        <---------ANAC58 --------->YAB1<---------GLK1(2) ---ZmHOX2a(1)<---------YAB1=====================HOX2a_HOX2a--------->ETT(2) ------->TEIL         <-- --MYB52(1)<-------TEIL  <---------CCA1(2)------>ZmHOX2a(1)--------->SPL7 <---------YAB1  ------>ZmHOX2a(1)   gagcaagaggtgattcattcttgatttggatctcagtatctttcctgagttattgtttgcgggcgacataagaatcatgaaactagaatctcctctgttt  20717100                                                                 <---------AGP1                                                              --------->HSFB2a(2)                                                      ---------->ID1            --------->YAB1------->TEIL      <-----------RAV1(1)  <---------ARR14(2)           <---------ATHB12      <---------ALFIN1 <---------ANAC58           ----------->HVH21 --------->DOF5.7(2)  <---------ANAC58        --------->ICU4       <----- --------DOF2          ----------->HVH21<-----------HVH21     <---------HSFB2a(2)              <-----   ctttagagagccaatgacacttgctctgaacgttaccacttctgtcatgttgccttgtcttcttgtagaactggtcatattgagtcaaaactcaattgtt  20717200                                                                                          <------NtERF2                                                                                        --------->ALFIN1                                                                                       <-------MYC3                                                                                       <-------PIF5                                                                                       <-------MYC2                                                                                       ------->MYC3                                                                                       <-------MYC4                                                                                       ------->PIF5                                                                                       ------->MYC4                                                                                      >>>>>>>>>>HY5                                                                                      --------->O2                                                                                      >>>>>>>>>>AtMYC2                                                                                      --------->TGA1a                                                                                      <---------O2                                                                                      <---------bZIP60(2)                                                                                      >>>>>>>>>>ABI5                          --------->GLK1(1)                                           <---------ANAC55(2)                          <---------GLK1(1)                      --------------->AtSPL3------->MYC2                  ----------->HVH21                            =================================bZIP_DOF                  ------->GAMYB                                --------->MYB52(1)     --------->ANAC55(2)           <---------ARR14(2)               ----------->GT1    ---------->DOF2        <---------TGA1a           --------->GLK1(2)               >>>>>>>>>TBF1<------ZmHOX2a(2)        ----------->HVH21      --------->MYB52(1)  --------->At4g35610     ==============================================bZIP_DOF ----ANAC58------->TEIL   <---------At4g35610     ---------->DOF2--------------->AtSPL8-------->ABF1 ----ANAC58--------->ARR14(2)      <---------AHL20(2) <------ZmHOX2a(1)    ------------>CBF   tgtgtaataaacgaatccaactgaagggagatgcgaatttatgaagaagaaaaaaaggatcaaactaaaggtaccattacaatatgacacgtggcgaaac  20717300                                                                                   --------->ANAC55(2)                                                                               <-----------TGA1                                                                               <-----------HVH21                                                                              --------->bZIP60(2)                                                                              --------->TGA1a                                                                              --------->ANAC58                                                                              <---------O2                                                                              =======================                                                                              --------->O2                                                                              --------->ANAC46                                                                              --------->ANAC58                                                                             ------>MYB46(1)                                                                             ------>MYB83                                                                            --------->MYB52(1)                                                                           --------->AtMYB61                                                                           --------->TOE2(2)                                                                           ------->GAMYB                                                                           =============MYC_MYB                                                                          <---------MYB55(2)                                                                          --------->MYB46(3)                                                                          --------->DEAR3(2)                                                                          <---------MYB52(2)                                                                         --------->ANAC58                                                                         ------>MYB83                                                                         ------>MYB46(1)                                                                         --------->ANAC58                                                          <----------DOF2-------->P<---------ANAC55(2)                                                  ======================================bZIP_DOF                           --------->ANAC58       <----------DOF2        ===============MYC_MYB                           --------->ANAC58       *TSS    ==============================bZIP_DOF                       --------->ARR11(3)    --------->LBD16           --------->AtMYB61          --------->YAB1   --------->AtLEC2 --------->ANAC46          --------->MYB46(3)            <   accaagactgaagcatagccactaaaatcatgcaaacttgtgtaatccgaaactttgaagcttttgcgaaaaaccaaccaacgtcacataatcgtcttct  20717400                         ----------->RAV1(2)                         --------->At4g35610   --------->MYB52(1)    <---------At4g35610           --------->At4g35610  ------->GAMYB<---------MYB52(2)                      <---------ZAT2       --------->GLK1(2) --------->MYB46(3) --------->YAB1                     --------->ZAT2       <-----------ARR10 <---------MYB52(2) <---------ICU4          <---------ANAC58               <---------GLK1(2) -------- =========MYC_MYB  --------->ICU4           <---------ANAC46           ---------->DOF2       <------- ---------At4g35610<---------ATHB12         <---------ANAC58     ---------->DOF2         <----------DOF2   tcaactaacaaaatccaactaatcatcatctgtctctctggctctggcttgtgtctgagctcgaacttaaagaaaaagaatctcaccatgtctttagctc  20717500                                                        --------->YAB1                                                      --------->ANAC58                                                      --------->ANAC58                                                      --------->ANAC46                                                      --------->AtLEC2                         ------                                              --------->At4g35610                              ------                                      --------->ANAC58------>MYB83                            -------                                      --------->ANAC58------>MYB46(1)                        <-------    <---------MYB52(1)       <---------ZAT14  --------->ZAT2               --------->ANAC58<---------ARR14(2) ->At4g35610                <-----------HVH21--------->ANAC58              --------->ANAC58--------->ARR14(2) --At4g35610 --------------------->WRI1      --------->ANAC58 --------->TOE2(3)        <-------TEIL--   cgagcagttatccatctctgtattcttcgccttcactgccaagaacccagcaaaccaagcaaaaccctagtttgatcactcaatccagtttcatttccgc  20717600                                                                                  <------NtERF2                                                            <------NtERF2       <---------DEAR3(1)                                                           --------->LBD16      <---------ANAC46                                                          --------->RAP2.6(2)  <------NtERF2                                                          --------->LBD16      --------->ATERF1(1)                                                         <---------LBD16      <-----------HVH21 --->LBD16                                             --------->ANAC46      <---------DEAR3(1) >NtERF2                                               ------->GAMYB         <---------ANAC58       - -->ANAC46                                            --------->MYB46(3)     <---------ANAC58    ---- --LBD16   <----------DOF2    <----------DOF2        <---------ALFIN1<----------DOF2     <---------GLK1(2) -------->DOF2        --------->RAP2.6(3)    <-----------RAV1(1)     --------------------->WRI1  <---   caaaagtctcttcctttcgagcaattcggcttctttatgcaatacccatgttgccaaacgccggaatttagctttgaaggcgtcggagacagagtcttca  20717700                                                                          <---------TOE1(3)             <------ZmHOX2a(1)                                        <----------DOF2          <-----------RAV1(2)                                     --------->ATERF1(1)   <---------At4g35610                                           --------->At4g35610   --------->At4g35610      >>>>>>>>>TBF1                    --------->ALFIN1                      -- --------->DOF2  ----------->HVH21                  <---------AHL20(2)<---------DAG2      ---------->DOF2 ----->At4g35610 <---------ARR14(2)            --------->TOE2(2) --------->ZAT2          <------ZmHOX2a(1) ------At4g35610<------ZmHOX2a(1)              --------->TOE1(2) <---------At4g35610  <---------LBD16   gctaaagctgaagcaggaggagacggagaagaagaagagaagtatgaaacatatgaaattgaagtggagcagccttatggtttgaaattcaggaaaggaa  20717800                                           ----------->HVH21                                         ----------->RAV1(2)                                         <---------ZAT2                                         --------->ZAT2                                         --------->At4g35610                                         <---------At4g35610                                       <-----------RAV1(2)                                     --------->ARR14(2)         <-----------RAV1(1)                                     <---------ARR14(2)     --------->ZAT18                                  --------->ALFIN1          <---------ZAT14      <------NtERF2             --------->ZAT2       --------->LBD16 <---------AtMYB61            <-----------RAV1(2)  <---------LBD16   <------NtERF2                 <- --------->ALFIN1           -------->P<------ZmHOX2a(2)---------->DOF2         --------->ATHB12 ----- ------->CCA1(2)      xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->ZAT14 <---------ZAT6    <------   gagatggtggcacttacattgatgctatcttaccaggtggatcagctgacaaaaccggaaagttcactgttggcgatagagttattgccacaaggtttgt  20717900  Previous    Next  AGI:  At1g55475.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13480.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83624.1) Range:  from: 20715180    to: 20716976    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g55480.1    Description:  binding / protein binding. similar to LPA1 (LOW PSII ACCUMULATION1), binding [Arabidopsis thaliana] (TAIR:AT1G02910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22110.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain PDZ/DHR/GLGF; (InterPro:IPR001478); contains InterPro domain Tetratricopeptide region (InterPro:IPR013026) Range:  from: 20717350    to: 20719213    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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