Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       <---------ANAC58              <---------TOE1(3)           ----------->GT1           <---------ANAC58       ----------->GT1  --------->GLK1(2)                 --------->STY1(2)     <-----------RAV1(2)  <---------ARR14(2)                <---------STY1(2)   <-----------HVH21                          --  --------->ARR14(2)            <---------At4g35610=========================HOX2a_HOX2a       <------ -------------->AG              --------->At4g35610<------ZmHOX2a(2)                          ------- -------------->AGL1            --------->ZAT2---------->DOF2      <---------TOE2(3)    --------->MYB55(2) ----TaMYB80                  <---------DEAR3(1)  --------->ARR11(3)                    <---------MYB46(3) -TGA1  ---------->DOF2      <---------At4g35610  <---------ARR11(3) <------ZmHOX2a(1) --------->ALFIN1   tccaaatctgaaaaggaataaatccaattcgagcggctggctagcttataaagatcaaggtcaggttttaaggaaatgagagtgagagggtgggaggggt  20694300                      ---------->DOF2                 ------>NtERF2                 --------->LBD16        <---------ANAC58        <---------ANAC58 --------->DAG2 --------->ANAC46             --------->GLK1(1) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          <---------GLK1(1)                                   <--- -------->DOF2  <---------ETT(1)        <---------LBD16                              --------->ZAT18 ---ANAC46     <---------LBD16         <---------ANAC46                          <-----------GT1 <--- ---->GT1 <---------CCA1(2)  ----------->HVH21                       --------->YAB1  <---------ZAT18   gaaaagggtgtcttatctccggcaaaaagaagtgacacattttgtggaattccaaattgcaagtagcacagtagtaatagtatatactgccctccaaatg  20694400                                             <------NtERF2                                            ------>NtERF2                                            --------->LBD16                                           --------->RAP2.3(2)                                           --------->RRTF1(2)                                           --------->RAP2.3(3)                                           --------->ATERF1(2)                                           --------->RAP2.6(2)                                           <---------ATERF1(2)                                           --------->DEAR3(1)                                           --------->DREB2C(2)                                          <---------LBD16                                          --------->ATERF1(1)                                          --------->RAP2.3(1)                                          --------->ERF1                                          --------->ORA47(2)                                         --------->LBD16                                      -------                                         <---------ATERF1(1)                                  <------                                         ------>NtERF2 --------->ALFIN1        --------->ANAC46                                        --------->ANAC46    --------->ALFIN1   --------->ANAC58                                        --------->DEAR3(1)  <--------P ------>ZmHOX2a(2)    <--------                               ------>ZmHOX2a(2)      ------->MYC3    <------ZmHOX2a(2)    <-------TEIL                              <------ZmHOX2a(2)       <-------MYC3   <---------ARR14(2) <------MYB46(1)                             <---------ARR11(3)       <-------MYC2   --------->ARR14(2) <------MYB83                   --------->ZAT18     <---------LBD16------->MYC2 --------->LBD16     --------->MYB59   ---------->DOF2 <---------ZAT18     --------->ATERF1(1) <-------GAMYB       --------->ANAC58 ------ANAC58     --------->ALFIN1    <---------ATERF1(1) <---------ANAC46   --------->MYB52(1)    -- ------ANAC58 ---------->DOF2--------->ARR11(3)---------->DOF2   <---------LBD16      <--------P<----   cttgcaaaagcagatagaaagtggaccatgagatcgtggtctccgccggcaaagcatgtggggttgagccggatcggacaaacgacatgtaggttcagat  20694500                        ----------------->AGL2                 <---------ANAC46                 <---------ANAC58            <---------bZIP60(2)          <------ZmHOX2a(1) -->At4g35610    <---------ANAC58 ---At4g35610   <------NtERF2  --------->YAB1                                                -------- ---RAV1(2)--------->ALFIN1--------->ICU4 <---------ANAC46                      --------->ANAC58----- --------->GT1--------->ALFIN1<---------YAB1                                    --------->ANAC58----- -----REM1(1)--------->ATERF1(1)     <------ZmHOX2a(1)        <----------DOF2 ---------->DOF2<-------   gtagaaaaataaggaggtggcttaaaaccattatcagaaggacgacgtagtcccatatgggtttctttggaatgaagggagaaagcaaatgagagggtat  20694600       ----------->GT1   <---------AHL20(2)                                        --------->YAB1  --------->AHL20(2)                 --------->At4g35610     <---------AHL20(2)  <---------AHL20(2)             <-----------GT1         <---------AHL20(2) ->ARR14(2)                  ------->TEIL              --------->AHL20(2)         ---------->DOF2 ---->ANAC58              <---------YAB1             --------->ICU4 <---------REM1(1) ---->ANAC58            --------->YAB1            ---------->ID1    ----------->GT1                 - --ARR14(2)            --------->ICU4<---------At4g35610<---------YAB1 ------->TEIL                 *TSS   gcaaataaatggtttcaactcgtaaatgatgaatttttctgctcccaaatttgtcatttttatttataagatgtaactagagtttaaagaccagttccat  20694700                                                     <------ZmHOX2a(1)                                              <---------AHL20(2)                                             <---------AHL20(1)                                             --------->AHL20(1)                                             --------->ARR11(3)                                             <---------ARR11(3)                             ---------                    <----------DOF2         --------->CCA1(2)                             <---------WOX13(1)                --------->ANAC58           <---------ARR11(3)     <---------ANAC58       <-----------     <---------WRKY12                      --------->ARR14(2)     <---------ANAC58      --------->ATHB12 --------->DOF2 --------->ANAC58         --------->LBD16      <-----------RAV1(2)      <---------YAB1   tacaaagtcaacttaggcaagtcttttgttttctctcttaatccagatatatttaggactagttccaggcttgcagacataaactaaacacgattgatgg  20694800                                                                     <---------ICU4                                                                     --------->ATHB12                                                                    --------->ICU4                                                                    <---------ATHB12                                                                    <---------YAB1       <---------At4g35610                 <---------DAG2                                    <---------TOE2(3)     --------->At4g35610                 <----------DOF2                                  --------->YAB1      ---------->DOF2              <-----------GT1                                 ------>ZmHOX2a(2)    --------->YAB1            <-----------GT1                      --------->YAB1<----------DOF2     <---------ICU4 >ATHB12   <---------ICU4               <---------AHL20(2)  --------->ARR11(3)    <---------ATHB12 -CBF      --------->YAB1<-----------HVH21 --------->ZAT6   <---------ARR11(3)    --------->ICU4   <-   aagtctttgcaaattatcactttatcttgtcaactcttagaattaatactactataatccatgatctttaatgatttctatgaaatcatgaagcagacta  20694900                                                     <---------ANAC46                                                     <---------ANAC58            >>>>>>>>>TAC1                        <-------MYC3            <-------GAMYB                        <-------MYC2        ------------>AtMYB77                     ------->MYC3       <---------YAB1                            ------->MYC2     <---------ICU4                             --------->ALFIN1     --------->YAB1                          <------NtERF2    <---------YAB1                         <---------bZIP60(1)               <------ZmHOX2a(1)  -------->ATHB1                           <---------RAP2.6(2)  --------->ATHB51  <---------ICU4                 <-----------RAV1(1) <---------ANAC58        ----------->GT1  --------->YAB1              <---------ICU4------>NtERF2       <---------ICU4                 ------ --------->AHL20(1)          <---------YAB1--------->bZIP60(1)  <--------ATHB1          --------->ARR11(3) <---------AHL20(2)  <-----------GT1      --------->RAP2.6(3)   <---------AHL20(2)      <---------ARR11(3) <---------YAB1    --------->HSFB2a(1)   --------->MYB52(1)     --------->AHL20(2)   --------->AHL20(2) --------->ICU4    <---------HSFC1(2)   ----------->HVH21      <---------ATHB51      <---------AHL20(2) --------->AHL20(2)--------->HSFC1(2)<---------MYB46(3)        <---------ATHB12 --------->AHL20(2) --------ICU4      <---------HSFB2a(1)  ----------->TGA1 <----------DOF2    ----------->GT1  --------   aaaattattatgacagttggaaatttccatactaattgttggatgacggcatgtggcttctttcaataatttagtagtaggataaaataaaatctacaac  20695000               <---------ANAC55(2)               <---------ANAC46              <---------LBD16              <-------TEIL             --------->CCA1(2)            --------->ARR11(1)            <---------ARR14(2)                        <---------------AtSPL8                    <----            --------->ARR11(3)                 --------->ARR14(2)                            ------->GAMYB          ----------->ARR10                    <---------ARR14(2)                            --------        ---------->DOF2                       <------ZmHOX2a(1)                              --------      --------->YAB1                    --------->ZAT18                                   --------->MYB52(1)     <---------ATHB12                   --------->ZAT14                              <-----------GT1 --->MYB52(1)--------->ARR14(1)         <---------ZAT14   --------->ZAT14       ---------->DOF2 <---- ->MYB46(3) --------->ARR14(2)        <---------------AtSPL8                <----------DOF2 ---------   cggttcaatgaaaagatacgggaagggaagggtttgaagaagtgtacaggaactgagatgtacagtcttgtttcaagactttaaaagttacacaaccgcc  20695100                                                                                  ---------->DOF2                                                                                <---------YAB1                                                                           <-----------GT1                                                                          --------->AHL20(2)                                                                          <---------AHL20(2)                                                                       <---------ICU4     --------->ZAT6                     <---------HSFB2a(2)           --------->ICU4 -----DAG2                              --------->HSFB2a(2)           <---------ATHB51 ->DEAR3(1)                             <---------HSFC1(1)            <---------AHL20(2) ->RAP2.6(2)                            --------->HSFC1(1)            --------->AHL20(2)       ------ ------DOF2                     <---------AHL20(2)                   --------->AHL20(2)     <-------- >MYB46(3)        <------ZmHOX2a(1)    <---------LBD16               <---------AHL20(1)   --------->GLK1(1)   ttatctaacacaaatctataggaacatatgctatttttttttctggaagattattttgaaaccgaaaacaaaataattaactatcaaaggagaaatcatg  20695200  Previous    Next  AGI:  At1g55410.1    Description:  pseudogene, CHP-rich zinc finger protein, putative, similar to putative CHP-rich zinc finger protein GB:CAB77744 GI:7268217 from (Arabidopsis thaliana) Range:  from: 20692280    to: 20694700    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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