Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      --------->At4g35610                                                                            --------->ANAC46                                                                            --------->ANAC58                                                                            --------->ANAC58                                                 --------->YAB1           --------->AtMYB61                                                <---------YAB1            ----------->RAV1(1)                                     --------->GLK1(2)                    ------->GAMYB                       <---------ARR11(3)  ----------->GT1             --------->WOX13(1)                       --------->ARR11(3) <---------TOE2(3)           <---------WRKY38(1)                 --------->YAB1    <---------AHL20(2)                 <---------WRKY12             <-                <---------YAB1   --------->CCA1(2)     --------->MYB52(2)--------->MYB46(3)        <-     <---------------AtSPL3     --------->ARR11(3)  --------->YAB1    <---------WRKY45           <--- ---->ALFIN1 <---------YAB1     <---------ARR11(3) <---------YAB1    --------->WRKY18(1)      <------ZmHOX2a(1) --MYC3    ----------->GT1    <---------TOE2(3) --------->ICU4 --------->ATHB12     <---------At4g35610 ->MYC3    <---------ZAT6 <----------DOF2 <---------TOE1(3)  ----------->RAV1(1)--------->ANAC46 ----   ggggaacatggtactgttattataagttctttaagatataatctgaggttattatgatagttgcaacattggtcaaccacacaaggagctcatggaggaa  20636600                                                        ---------->DOF2           --------->YAB1                                                       ------->GAMYB           --------->YAB1                         <---------At4g35610           --------->AtMYB61      --------->AHL20(2)                         --------->At4g35610          --------->MYB46(3)  <-------TEIL          <---------ANAC58                           -------->P          <------ZmHOX2a(2)          <---------ANAC58--------->AGP1            --------->WOX13(1)  --------->AGP1           <--- --------DAG2      <---------ARR11(3)        <---------------------WRI1 <---------ARR11(3)     ------ ---------DOF2<---------ANAC46              <-----------HVH21           --------->ARR11(3)     ------ ------HSFC1(2)    --------->AHL20(1)       --------->LBD16            --------->GLK1(1)      ------- ----->HSFC1(2)    --------->ARR11(3)      --------->ANAC46            <---------GLK1(1) ---------->DOF2   gctttttggattacttgcgaatatatcagctctagtttttgttatccgtcgtatcaaccaaagcattttcaagagatccattaatcacatcaaaagccgc  20636700                                                                                  <---------WOX13(1)                                                                                --------->MYB52(2)                                                                              <---------MYB52(1)       <-----------RAV1(1)                                                    --------->DOF5.7(2)     <---------GLK1(1)                   <---------MYB52(1)                  --------->TOE1(3)    --------->ARR14(2)                   <------NtERF2                       --------->TOE2(3)    <---------ARR14(2)                  ------>NtERF2                       ----------->GT1<---------YAB1 -------DOF2                           --------->DEAR3(1)                  <---------TOE1(3) --->LBD16                       <---------ANAC58                          <---------TOE2(3) >NtERF2   --------->ZAT18       <---------ANAC58                     --------->ZAT6  <----------DOF2 -->RAP2.6(2)        <------NtERF2 --------->ATERF1(1)<-----------HVH21   --------->MYB52(1)   gttttggatatgttgcactgggcggaagacggatggcttcgccgtcgttttgaacatgtcatcgttttggtaatactaacgttaattgctattctgaata  20636800                                                                            <---------------AGL15                                                                            --------------->AGL15                                                                            =========================                                    ---------->DOF2                  <---------ANAC46        <-------                            --------->At4g35610                      <------MYB83           <--------                            <---------ZAT2                      --------->ALFIN1          <---------ARR11(3)                      <---------ARR11(3)                       <------ZmHOX2a(1) ---------->DOF2                ------->TEIL--------->ZAT2       <---------TOE2(1)   <------MYB46(1)      --------->ARR11(3)        <----------DOF2     <---------At4g35610  <---------TOE1(1)  --------->MYB59--------->ICU4   gaattggtttctttgatgaatcaagaactcagcagagccaaagagtatggtccgatgttaactgaggagttgggttttcttcataaagatgagacctttt  20636900                                                       --------->MYB52(1)                                                       ------>MYB83                                                       ------>MYB46(1)                                                       -------->P                                                      --------->MYB55(1)                                                     <---------MYB111(1)                                                     --------->MYB46(3)                                                     <---------MYB59                                                     <---------MYB46(2)                                                     <---------MYB111(2)                                                     <---------MYB55(2)                                                   -------->P                                                   ------->TEIL                                               <---------ARR14(2)                                               --------->ARR14(2)                                               --------->GLK1(2)                                               <-----------ARR10                                               <---------ARR11(1)              <----------DOF2       --------->ANAC58                       <---------ARR14(1)            --------->ANAC58       --     ---------->DOF2                     <---------ALFIN1                   --------->ANAC58    ----- =====================================MADS_MADS------->TEIL          <------------CBF          ------ ---DOF2              --------------->AGL15--------->ANAC46      --------->AtMYB61    --------->TOE1(3) -DAG2 --------->ANAC58                 --------->MYB46(3)      --------->MYB46(3)    --------->TOE2(3)   ctgttttaaaagcaaaacaaatcgccatttggagcattctcgtccaccgaatctacctaccagtctaccaccattgacaagctttaaactttaaactata  20637000                                                                                                   --                                                                                                  ---                                                                              <---------ZAT2      ---                                                                           ---------->DOF2        ---       --------->MYB46(3)                                               <-----------HVH21         ---     ----------->RAV1(1)                                             <---------ICU4      <----------DOF2 --------->DAG2                                                   --------->YAB1     --------->WRKY12 -------->DOF2                                                   --------->ICU4      --------->WRKY38(1) ---->YAB1                 ---------->DOF2                       <---------YAB1    <-------GAMYB  <-- ----->TBP                *TSS      --------->ALFIN1          <---------ANAC46--------->ZAT2    <----   aaaaaggcaacaacttgtatagagagatagaaagagatgtggaagagcataggcgaattgagttgcgatgattatgtcaaagctgggttgactttggaag  20637100   --------->ANAC58   --------->ANAC58                                                                                -- ---->NtERF2                                                                                       -- ------>ANAC58                                                                <---------AtMYB61    -- ------>ANAC58                                                         ---------->DOF2      <-------- ------>ANAC46                                                  <------ZmHOX2a(2)  <---------At4g35610 ------>RAP2.6(2)                                              <---------ARR11(3)  --------->At4g35610 --------ID1                                                   --------->ARR11(3)<--------P --------- -----ATERF1(1)               <---------YAB1            ------>ZmHOX2a(2)   <----------DOF2 <--------   acgccaaggaatttgacaaattggtgagcgatgtgattacaaaggctatagagactgatccaagagatcaatggaaagctttggtagatgagagtgtgct  20637200                            <---------GLK1(2) ------->ANAC46            <---------At4g35610 ------->ANAC58         <---------At4g35610 ------->ANAC58   ------>ZmHOX2a(1) -ZAT14           --------->At4g35610 --------->ZAT14                        <---------ALFIN1 >ZAT18       --------->ARR14(2)      <---------ZAT14                 <---------AtLEC2 -ZAT18    <---------ALFIN1--------->At4g35610                  ------>ZmHOX2a(1)------>ZmHOX2a(1)   taagccatggcatccacatcctctgcatcagcttctctactactctgtctattcaaactgggactcctctgttcatggccctcctctctattggtttcct  20637300                                                                                             ------>ZmHOX2a(2)                                                                                            <------ZmHOX2a(2)                                                                                            <--------                                                                                           --------->ARR11(3)                                                                                           <---------ARR11(3)                                                                                <---------ANAC58                                                    --------->At4g35610         <---------ANAC58    -               ------->TEIL              ----------->GT1 <---------WOX13(1)     <---------ANAC46   <-     <---------ANAC58         <---------YAB1        <---------At4g35610     <----------DOF2<---------AGP1     <---------ANAC58      --------->GLK1(2)        <---------ZAT2    <---------ARR11(3)  <---------CCA1(2)   tctctgtgcgtttcatgaacttgttcgaaattctgatatttatctgtaaaatacagctgattgtctgttcaatttcttctttgtgtgtgtttagatctca  20637400                                                                                                    -                                                                                                   --               --------->LBD16                                                                     <-           ------>MYB46(1)                                                                         <-           ------>MYB83             --------->ANAC58                                              ---           --------->GLK1(2)        --------->ANAC55(2)                                           ---           <---------ARR14(2)       <---------ANAC55(2)                                          ----           --------->ARR14(2)       --------->ANAC58                                           ------          --------->WOX13(1)        --------->ANAC46                                          -------     --------->ZAT18 --------->At4g35610                                                      <------     <---------ZAT18 <---------ZAT2<---------LBD16                                            <------ -GLK1(1)--------->AtMYB61      --------->ARR11(3)               --------->ANAC58        <---------DAG2 --------->DOF2<---------LBD16---------->TaMYB80                 --------->ANAC58        <----------DOF2 --------WRKY38(1)   <---------At4g35610                 ------>ZmHOX2a(1)   ---------->DOF2 <-------   gtcaaagtccaccaatctggggaagctgatggaatatcacggaccaagacttcttggtccttcatacaagaaccctcttgaaagttttgaacttttccgg  20637500  Previous    Next  AGI:  At1g55310.1    Description:  SR33 (SC35-like splicing factor 33); RNA binding. similar to SCL30a (SC35-like splicing factor 30a), RNA binding [Arabidopsis thaliana] (TAIR:AT3G13570.1); similar to RNA recognition motif family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96206.1); similar to putative splicing factor [Oryza sativa (japonica cultivar-group)] (GB:AAP46199.1); similar to hypothetical protein OsI_011439 [Oryza sativa (indica cultivar-group)] (GB:EAY90206.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 20633732    to: 20636564    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g55320.1    Description:  ligase. similar to acyl-activating enzyme 17 (AAE17) [Arabidopsis thaliana] (TAIR:AT5G23050.1); similar to acyl-activating enzyme 18, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99434.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22055.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22056.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) Range:  from: 20637026    to: 20640558    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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