Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          <---------ARR14(2)                          ------>ZmHOX2a(2)                         <------ZmHOX2a(2)                        <---------ARR11(3)              <---------HSFB2a(2)       --------->ARR14(2)     ----------->GT1    --------->ARR14(2)     <---------ANAC55(2)<---------ARR14(2)  <---------ARR14(2)    <-----------ARR10  --------->ARR14(2)    --------->ARR11(3)         <---------MYB46(3)      --------->CCA1(2) -------->LBD16    --------->ANAC58  <---------ANAC55(1)       --------->SPL7 ------->HSFB2a(2) --------->ANAC58  <---------ANAC55(2)    <---------ANAC58 --------HSFB2a(2)--------->SPL7     <---------ANAC46       <---------ANAC46      --------->GLK1(2) --->WOX13(1) --------->HSFB2a(2)    --------->ANAC55(2)    <---------ANAC58     <---------GLK1(2)  - ---ICU4  --------->ARR14(2)      <---------ARR14(2)<-------GAMYB     ---------->DOF2               - --ATHB12 <---------ARR14(2)      --------->ARR14(2)<---------At4g35610   <----------ID1            -   tccagaaacgtgaattcgcgaacgcagatcgtatcgaatacgtatacttcggtctgttgatgtcgtaagtcgaaaagagacgagaatctattgaactgaa  20633300                                                                                      ------------>CBF                                                                                     <-----------GT1                                                                             <---------ARR14(2)    --                                                                             --------->ARR14(2)    <-                                                                           --------->HSFC1(2)   <----                                                                           <---------HSFC1(2) <------              <---------YAB1                                          <---------HSFB2a(2)  --------->AHL20(2)       <----------DOF2                                                --------->HSFC1(1)   <---------AHL20(1) -------->ANAC46                                                      --------->HSFB2a(2)  --------->AHL20(1) -------->ANAC58                                                      <---------HSFC1(1)   <---------AHL20(2) -------->ANAC58                                           *TSS<-----------GT1   ------>ZmHOX2a(1) <-   acacgaattctttgttatgttagagagagagagagagagagagagagagagagacattataagataaaccttctagaagtatccttttaacaatttatta  20633400                                                       ----------->GT1                                                      --------->DAG2                                                      <---------------AtSPL8                                                    ---------->DOF2                                                  <---------YAB1                                                --------->YAB1                                                --------->AHL20(2)                                               <---------YAB1                                             --------->YAB1                                             <---------ICU4                                            <---------AHL20(2)           --------->MYB46(3)    <-----------GT1                         --------->ICU4<-------TEIL ------>MYB46(1)   <-----------GT1                          --------->AHL20(2)         ------>MYB83 ------->AHL20(2)                           <---------ATHB51         --------->MYB46(3) --------AHL20(1)        <---------ARR11(3)<---------AHL20(1)       --------->ANAC58 -----AHL20(2) <---------TOE2(3)          --------->YAB1<----------ID1 ----------->RAV1(1) ---YAB1     ---------->DOF2 <---------TOE2(3) --------->ICU4       --------->ANAC58    <-----------GT1 --------AHL20(2)        --------->ARR11(3)--------->AHL20(2)  --------->YAB1 ----------->GT1   ttttatttccctccctaaaggtttcaagatttatgttttgaccaaaataattataaaaggtacaaacagaacccaacaattggtgaaaaatcaccaattt  20633500                                                                                ---------->DOF2                                                                              <---------AHL20(2)                                                                              --------->YAB1       --                                                                              --------->AHL20(2)  <--                                                                           --------->YAB1     -------                                                 ------>ZmHOX2a(2)      --------->YAB1        <------                                                <---------At4g35610     -------->HAHB4       <-------                   <-----------GT1             <---------ARR11(3)      ----------->GT1       <-------             <---------AHL20(2)             <---------WOX13(1)         <---------YAB1        --------   --------->AHL20(2)                    <---------AHL20(2)            --------->ICU4   <---------ARR11(3)   <---------AHL20(2)             ======================HOX2a_HOX2a  --------->YAB1   ----------->GT1  --------->AHL20(2)              ------>ZmHOX2a(1)         <---------YAB1<---------YAB1--------->ARR11(3)   gctatttaattctattgaattttacatttttagttcctcttagataattgatctcactaagtataaatgtataatgataataaaaaggaagataatttaa  20633600 <---------------AGL15                                            --------->ICU4 --------->HSFB2a(2)                                            --------->AHL20(2) <---------HSFB2a(2)                                           --------->AHL20(2) --------------->AGL15                                         <---------AHL20(2) ------->MYB52(1)                                             <---------AHL20(1) ---------GT1                                                --------->YAB1                     ----- -->AHL20(2)                                               --------->AHL20(2)                  <----- ---AHL20(2)                                            <----------DOF2                  <---------ANAC55(2) --AHL20(2)                                      <---------AHL20(2)               ----------->GT1 --AHL20(1)           --------->WOX13(1)         --------->AHL20(2)         <-------GAMYB----------->GT1 ->AHL20(2)        --------->GLK1(2) <----------DOF2    --------->TOE2(3)  ----------->GT1--------->TOE2(3)   ttaccagaaattggaatggagcatctatcaaatagaaaactttaaggggattttaatactttaaaataattttgagggggttaaatgtaaaacgtaaata  20633700                                                                                            <--------                                                                                         <-------TEIL                                                                                        --------->ARR14(1)                                                                                        --------->GLK1(2)                                                                                       <---------GLK1(2)                                                                                --------->DEAR3(1)                                                                                --------->AtMYB61   <               <---------AHL20(2)                                               <---------ALFIN1<----               --------->AHL20(2)                                              --------->MYB46(3)  <-         --------->TOE1(3)   <---------WOX13(1)                              --------->ANAC46--------         --------->TOE2(3)  <------------CBF                         <---------MYB52(1)<---------ARR14(2) ---------->DOF2           --------->ATHB12                         --------->LBD16    --------->ARR14(2) ---->AHL20(2)--------->AHL20(2)   --------->WOX13(1)      <---------ALFIN1 ------>ZmHOX2a(1)-------- ----AHL20(2) <---------ATHB12  *TSS            <---------ICU4      <-----------HVH21----------->ARR10   atataaagaaaccctaataaataagtcgttcattgatcaatcttctccaattcttgcagcatcacttctccgtcgttcctcaccaccgagattcgttcac  20633800                                                  <---------ARR11(1)                                                  <---------ARR14(2)                                                  <-----------ARR10                                                  --------->ARR14(2)                                                 <---------CCA1(2)                                                 <---------ARR14(1)                                                --------->LBD16                                         <----------TaMYB80                                        <---------ARR14(2)                                        <-----------ARR10                                        ---------->TaMYB80 ---HVH21                               --------->ARR14(2) --------P                         ------>MYB83--------->ANAC46                   <----------DOF2 -----LBD16                        -------->P  --------->ANAC55(2)                <---------DAG2 --------MYB52(1)    <-----------GT1 ------->GAMYB<---------ARR11(3)             <---------ANAC58 ->WRKY12       <---------RVE1(1)  ------>MYB46(1)------->TEIL    <-----------HVH21 ->WRKY38(1) --------->LBD16      --------->MYB52(1)       <----------DOF2       <---------ANAC58   cggtaagtcttatccctgatattttgctcttcttcccaaccgtatatacccgtatcttcttctttctctgtcgaataaacttggcttttccgacttcgat  20633900                                                              ----------->GT1                                                             <---------ANAC46                                                             <---------ANAC55(2)                                                          ----------->TGA1                                                          ----------->HVH21                                                        <---------ANAC58                                                        --------->O2                    <---------YAB1                                                        <---------ANAC58              -------->ATHB1                                                        <---------ANAC55(2)           --------->YAB1                                                        <---------O2                  <---------ICU4                                                        --------->ANAC55(2)           --------->ATHB51                                                      ------>ZmHOX2a(2)               <--------HAHB4                                                     <------ZmHOX2a(2)               <---------ATHB12                                 <---------DAG2     --------->ARR11(3)               --------->ICU4                                 <----------DOF2    --------->ARR14(2)               <---------YAB1                            --------->SPL7          <---------ARR11(3)               <---------ATHB51                            >>>>>>>>>SPL7           <---------ARR14(2)             --------->WOX13(1)                            >>>>>>>>>SPL4   --------->LBD16--------->MYB52(1)   --------->ANAC58                        --------------->AtSPL3  ---------->DOF2                 --------->ANAC58                        --------------->AtSPL8----------->HVH21               <-----------RAV1(2)                       <---------ANAC46     --------->At4g35610              <------ZmHOX2a(2)                     --------->WRKY38(1)  <---------LBD16--------->LBD16    --------->ARR11(3)      --------->YAB1 --------->WRKY12     --------->ZAT18<-----------HVH21  <---------AGP1   tccttcaattgtaaacaacttcgttgcccgtacaactttttgagtccggtgaaagatcccgtgacggaaaaaactgtagatcaggcaattattatgtcta  20634000                                                        <----------DOF2                                                       ------>ZmHOX2a(2)                    =========                                                     --------->ARR11(3)                     <--------            <------ZmHOX2a(1)                        <---------ARR11(3)                <---------At4g35610          <---------TOE2(3)                 ---------->DOF2                  <---------TOE2(3)  <----        ---------->DOF2                  <---------TOE2(3)                  <-----------GT1 ------>ZmHOX2a(1)   tacatcgatataaaggattgaatcgttcatcttaagtaagtttgacgaaagttgtgatcttttgtgcctattcacatataacgtttcttagctcctatct  20634100                                                                                               <-----                                         ------>ZmHOX2a(2)                                    <------                                       --------->ARR11(3)                                     <------                                    ------->MYC3                      ----------->GT1        --------                         --------->TOE2(3)                           --------->YAB1        <---------WOX13(1)        <---------At4g35610      <---------ANAC46                 --------->WOX13(1)   --------->HSFB2a(2)        <---------ZAT2  ----------->RAV1(2)                 <---------YAB1             <---------HSFB2a(2)        --------->At4g35610      <---------ANAC58         <-----------GT1         ------>ZmHOX2a(2) =========================HOX2a_HOX2a  <---------ARR11(3)--------->AHL20(2)     --------->ARR11(3) -CCA1(2)              -------->P<---------ANAC58    <---------AHL20(2)         <---------ARR11(3)<-- ------DOF2        ------>ZmHOX2a(2)<-------MYC3<---------YAB1   <---------AHL20(2)<----------DOF2<--   tttgaaattgagctgattcgatctctacctgaattgcatgtgatcttattttgatataatttactattcaattagaaaatatgatctttctagattgatt  20634200  Previous    Next  AGI:  At1g55300.1    Description:  TAF7 (TBP-ASSOCIATED FACTOR 7); general RNA polymerase II transcription factor. similar to unnamed protein product [Vitis vinifera] (GB:CAO22061.1); contains InterPro domain TAFII55 protein conserved region; (InterPro:IPR006751) Range:  from: 20631694    to: 20633359    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g55310.1    Description:  SR33 (SC35-like splicing factor 33); RNA binding. similar to SCL30a (SC35-like splicing factor 30a), RNA binding [Arabidopsis thaliana] (TAIR:AT3G13570.1); similar to RNA recognition motif family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96206.1); similar to putative splicing factor [Oryza sativa (japonica cultivar-group)] (GB:AAP46199.1); similar to hypothetical protein OsI_011439 [Oryza sativa (indica cultivar-group)] (GB:EAY90206.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 20633732    to: 20636564    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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