Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 <---------ALFIN1                            <-----------GT1                    ------>ZmHOX2a(2)                                         --------->YAB1                   <------ZmHOX2a(2)                                         <---------YAB1                   --------->CCA1(2)                                       --------->YAB1                  <---------ARR11(3)                                     --------->ANAC58                  --------->ARR11(3)     <---------ZAT18                 --------->ANAC58                  <-----------ARR10      --------->ZAT18           ----------->RAV1(1)                  --------->ARR14(2) <---------AtMYB61         <---------ARR14(2)                ----                  <---------ARR14(2) <-----------RAV1(1)       --------->ARR14(2)                <---                  <---------AGP1  <---------DAG2              --------->GLK1(1)                  ----     <------NtERF2--------->AGP1  <----------DOF2             <---------CCA1(2)        --------->WOX13(1)   atgaggcagcattgaagacagatctaggtttctccacttttggtggacttggaaaccatttctcatatccaacacaagtatcatcaaatccatcaccaat  20577700                                                                            <---------MYB59                                                                           --------->ANAC58         <                                                                           --------->ANAC58      <---                                                                         <------ZmHOX2a(1)   <-------                              <---------YAB1                      -------->ATHB1             <-------                            <---------ICU4                        --------->AHL20(2)         <-------                            --------->YAB1                        --------->ATHB51       <----------DOF2 ----->ARR14(2)            <---------ATHB12                      <---------YAB1         --------->TOE2(3) ------ARR11(3)           ------->TEIL                           --------->ICU4     <---------MYB52(1) ----->ARR11(3)        <---------YAB1        ---------->DOF2     <---------ATHB51   --------->DOF5.7(2)   atctacataaaaccagaaatttagtatgaatcatgaattggacataacaaagagagagttctaaacaattattcaggacccaattcgttacctttgcttg  20577800                                             <------NtERF2                                            --------->LBD16                                           --------->DEAR3(1)                                          <------NtERF2                                         ------>NtERF2                        <---------ARR14(2)<---------LBD16                        --------->ARR11(3)                        --------->ARR14(2)--------->ATERF1(1)         --------->ALFIN1 ------ZmHOX2a(1)  --------->MYB52(1)    <---------RAP2.3(1)       <---------DEAR3(1)     --------->YAB1 ------AtLEC2     --------->ARR14(2)    --------->ETT(2)          <---------------------WRI1 --ANAC58         <---------ARR14(2)    <---------DEAR3(1)      ----------->HVH21<---------ARR11(3) - --ANAC46      --------->YAB1         <-----------HVH21        --------->ATERF1(1)  --------------->AGL15 --ANAC58   --------->WOX13(1)       <-----------RAV1(1)    <------ZmHOX2a(1)---------->DOF2      <--   caggacgtttgagtaaatcagaaacggagacgcttaagtttgtcgccggagaagatgaagaaggagacgacggtggaacaaaagaactcaaattagaatt  20577900                                                <---------ARR11(1)                                                --------->ARR14(2)                                                ------->TEIL                                                <-----------ARR10                                                <---------ARR14(2)                                               <---------ARR14(1)                                               <---------CCA1(2)                                             --------->ANAC55(2)                                             <---------ANAC58                                             <---------ANAC46               <---------ANAC46              <---------ANAC58               <---------ANAC58              <---------ANAC55(2)               <---------ANAC58             <------NtERF2            --------->ALFIN1              <---------DEAR3(1)            <---------DEAR3(1)           <---------ZAT2          <---------bZIP60(2)            <---------At4g35610          <---------ANAC46               --------->At4g35610          <---------ANAC58         --------->ZAT2          <---------ANAC55(2)      <---------ZAT2   ---------->DOF2            --------------------->WRI1          <---------ANAC58         <---------HSFB2a(1)                     <---------At4g35610          <---------ANAC55(1)      <---------At4g35610             --------->ZAT14          <---------AtLEC2         --------->At4g35610             <---------ZAT14     <---------GLK1(2)    <---------YAB1                 --------->HSFC1(2)     <---------At4g35610  <---------At4g35610 -------->TOE2(3)                  --------->HSFB2a(1)    --------->ZAT2   --------->ZAT2 ---------GT1 <------NtERF2        <---------HSFC1(2)     --------->At4g35610--------->ZAT18   ------   tttcttaacattgcgtggcgcattgggattgtatcggagcttcggctgcgtatctaaagcagctctcactatagtagagctcgctgatagaatcgccatt  20578000                                                                                         <---------bZIP60(2)                                                                                         <---------ANAC46                                                                                         <---------ANAC58                                                                                         <---------ANAC58                                                                                         <---------ANAC55(1)                                                                                        <------NtERF2                                                                                      --------->ALFIN1                                                                                      ----------->HVH21                                                                                     ------->MYC3                                                                                     <-------MYC3                                                                                     <-------MYC2                                                                                     <-------PIF5                                                                                     ------->MYC2                                                                                     ------->PIF5                                                                          --------->AHL20(2)                                                                   ----------->HVH21 <-------MYC4                                                                  --------->At5g28300------->MYC4                                                                  <------NtERF2     <---------TGA1a                                                                 <---------ATERF1(1)>>>>>>>>>>HY5                                                                 <---------DEAR4(2) --------->TGA1a                              --------->At4g35610           <-----------RAV1(2)     --------->PIF3(3)                             <---------TOE1(3)             <------ZmHOX2a(2)        --------->O2                <----------DOF2      <---------MYB52(1)   --------->ARR11(3)        <---------O2   <-                <---------DAG2<---------At4g35610         <---------ARR11(3)   <-----------GT1     <-               *TSS         <-----------GT1      ----------->GT1 ----------->GT1    <---------PIF3(3)     <-----------GT1<---------AHL20(2)       ----------->HVH21  <---------DEAR3(1)  --------->ANAC46 --->ICU4     <---------At4g35610   <---------DAG2--------->At5g28300     <---------AHL20(2)     <---   tttgaaaaaacctttcagctttttattttttaagcttcccttatgttttgacggtaataagatcaggcggtgacatttatttatccacgtggcgtgtttt  20578100                                   ------->TEIL                                 <---------ZAT18                                 <---------SPL7               <---------CCA1(2)                                <---------ANAC58            --------->O2            <----------DOF2                          --------->ANAC46      <---------ANAC58       --------->HSFB2a(2) --------ANAC58   --------->AHL20(2)           *TSS         <---------O2           <---------DAG2 --------ANAC58   <---------AHL20(2)  <----------DOF2<----------DOF2   <---------HSFB2a(2)          - --------GT1    --------->YAB1  <---------ANAC58<---------ANAC58     ----------->RAV1(2)   <---------SPL7   tacttgtctgtttcacaaaaataaatacacactagcgtacctttagcattacgagctttgtctcgtctctcttctggcactctcacctttcgtcgtccca  20578200                        --------------->AtSPL3                        --------------->AtSPL8             --------->MYB46(3)         <---------DAG2           --------->MYB52(1)  --------->ANAC46        --------->TOE1(3)     --------->TOE1(2)            --------->YAB1                         <--        --------->TOE2(3)    ----------->RAV1(2)   <----------DOF2                          ------->TEIL ---------->GT1      <---------GLK1(1)  <----------DOF2   <------ZmHOX2a(2)   --------->GLK1(2) <----   atttgtaaaaccctaacgactagatttcagtacctgcaactcctttttctcaactttccgatcatatttctcaatcggagaaactgattcgacgaacatc  20578300                          --------->ARR14(2)                    <---------DEAR3(1)    <---------WRKY18(1)                   --------->DEAR3(2)    ----------->HVH21                  <---------ARR14(2)   <---------ANAC58                  --------->ARR14(2)   <---------ANAC58                  --------->SPL7       <---------ANAC46                <---------SPL7       --------->SPL7                ----------->HVH21  <---------SPL7                     <---------ANAC58                --------->LBD16   --------->TOE1(1)   <--------P   <----------DOF2        <---------YAB1    <---------ARR14(2)       <---------TOE2(2)  <---------ANAC58 -------YAB1   --------->RAP2.6(2)--------->TOE2(1)<---------TOE1(2)  <---------ANAC46     --------->ZAT14 -----ICU4    <---------LBD16<---------ALFIN1 <-----------HVH21<-----------GT1--------->ANAC46      <   atgagtcgctacgatagccggaccggcgattccacctcgtaccgtgaccgtcgaaggtaagtgtgtttcctttcgtatagactccatttgaactatagtc  20578400                                                                         <-------GAMYB                                                                        <---------ANAC58                                                                        <---------ANAC58                                                             <---------LBD16                    <----                                          --------->ANAC46  <---------ANAC58                   ------                                     <---------ARR14(2)     <---------ANAC58                   <-----                          <---------ARR14(2)                <---------ANAC46     <---------GLK1(2)  <                ------->TEIL         --------->ARR14(2)    <-------TEIL--------->ZAT18     <---------ANAC58 ---------MYB52(1)        --------->ARR14(2)      <---------YAB1       <---------ZAT18     <---------ANAC58   tcgttgtttttggctatgtatttgaacgaatatgaagaaaatccacttaattttgatcaaattcgtggaatagtgcgttatcaaattctctatgggtgtg  20578500                                                        <---------ANAC46                                                        <---------ANAC58                                                        <---------ANAC58                                                        <------MYB46(1)                                                        <------MYB83                                                       --------->MYB46(2)                                                       <---------MYB46(3)           <---------MYB52(1)                                                       <---------AtMYB61         <-----------RAV1(2) ---GAMYB                             --------->TOE2(3)--------->MYB111(2)    --------->At4g35610 --->ALFIN1                      <----------DOF2       --------->MYB111(1)    <---------At4g35610 ------RAV1(1)                   <---------DAG2        --------->MYB55(2)     <---------ZAT2 ---------HSFB2a(2)        --------->ARR14(2)   <-----------RAV1(2)--------------->AGL15   ttggagaagaagagtttgcttcattttcaaatttgctttatcttagtgactcagggtttggtgggacttcatcatatggaagctcaggtagtcatacatc  20578600  Previous    Next  AGI:  At1g55140.1    Description:  RNA binding / ribonuclease III. similar to URF 4-related [Arabidopsis thaliana] (TAIR:AT3G13740.1); similar to unknown [Populus trichocarpa] (GB:ABK95862.1); contains InterPro domain Ribonuclease III; (InterPro:IPR000999) Range:  from: 20576072    to: 20578015    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g55150.1    Description:  DEAD box RNA helicase, putative (RH20). Identical to DEAD-box ATP-dependent RNA helicase 20 (RH20) [Arabidopsis Thaliana] (GB:Q9C718;GB:Q9ZS02); similar to ethylene-responsive DEAD box RNA helicase, putative (RH30) [Arabidopsis thaliana] (TAIR:AT5G63120.2); similar to DEAD-box ATP-dependent RNA helicase 20 (GB:Q5QMN3); similar to ethylene-responsive RNA helicase [Lycopersicon esculentum] (GB:AAD46404.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABN08415.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR01402 Range:  from: 20578147    to: 20580987    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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