Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    <xxxxxxxxxxxxxxxxsmallRNA(s)                 --------->YAB1                 <---------ICU4                --------->ICU4                <---------ATHB12               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)              ------>MYB83              ------>MYB46(1)         --------->AHL20(1)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <---------MYB59           <---------AHL20(1)            <---------MYB111(1)     --------->ARR11(3)            <---------MYB46(2)      <---------ARR11(3)           --------->ANAC55(2)      --------->AHL20(1)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <xxxxxxxxxxxxxxxxsmallRNA(s)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)          <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <xxxxxxxxxxxxxxxxsmallRNA(i)<---------AHL20(1)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     --------->ANAC58       <---------AtLEC2         ----------->GT1              <---------ANAC55(2)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           ----------->GT1               --------->ANAC55(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <---------LBD16               <-----------GT1     --------->ANAC58     <---------YAB1         <<<<<<<<<SPL5     --------->CCA1(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <<<<<<<<<SPL1    <---------AHL20(1)               <-  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          <<<<<<<<<SPL4    --------->AHL20(1)               <-  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <---------SPL7   --------->AHL20(2)               <-- ---->REM1(2)<xxxxxxxxxxxxxxxxsmallRNA(s) <-----------GT1   --------->ANAC58 <---------ICU4   <------ --ANAC58xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------------AtSPL3        <---------YAB1   <------- --ANAC58xxxxxxxxxxxxxxxx>smallRNA(s) --------->AHL20(2)    --------->ANAC58--------->ICU4   --------   aagagtcacgctcacctaatcatcagttttgaatgaaaaatattttacattgtacgggtaaaacgaaatatataagagattattacatattaagagatat  20572900                                                   --------->ARR14(2)                                                   <---------ARR14(2)                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                <---------ANAC46                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------YAB1                           <---------ANAC46 --------TOE2(3)                             <---------AtMYB61 --------YAB1                             <---------DAG2 ---------GT1                             <----------DOF2 ---RVE1(1)                            <-----------GT1 --ARR11(3)                        --------->ARR11(3)            --------->ANAC46 ->ARR11(3)<-----------GT1         <---------ARR11(3)      <---------YAB1   <-----------GT1   taacattcttattttaccattcacttccaaatttgaagattttacttttggtgtatatgttatttttacgcagagattatacgtttttttttcatttgaa  20573000                                                                                      ----------->GT1                                                                            <---------AHL20(2)            <---------YAB1                                                 <---------AHL20(1)          --------------->AGL15            <---------DAG2                  --------->AHL20(1)          <---------------AGL15            <----------DOF2               <---------AHL20(1)     <----------DOF2                    <-----------GT1          ----------->GT1 <---------HSFB2a(2)  <---------TOE1(3)               ----------->TBP      ----------->GT1   --------->AHL20(1) <-----------GT1   ---------->DOF2--------->AHL20(2)  <------ZmHOX2a(1) --------->AHL20(2)   atttaagcttttctattatttgaaagaaatttttgtataaataaactttttttgaaggagtgaaaaccagtaaaatatatattttggaaggaaattttag  20573100                   --------->AHL20(2)                   --------->ATHB12                     <---------AHL20(1)                   --------->ATHB51                     <---------AHL20(2)             ----------->GT1                            --------->AHL20(1)          ----------->GT1                               --------->AHL20(2)         <---------------AtSPL8                 ----------->GT1   <---------AHL20(2)                       <---------ARR11(3)                                ------>NtERF2   <---------YAB1 --------->ICU4            --------->ARR11(3)         ---------->DOF2    --------->ANAC58   --------->AHL20(2)                       <---------GLK1(2)       --------->AHL20(2)    --------->ANAC58  --------->YAB1  <---------AHL20(2)<-------GAMYB      --------->AHL20(2)   >>>>>>>>>>GT-3b  <-------  --------->TOE2(3)<---------AHL20(2)    <---------WOX13(1)   <-----------GT1   --------->CCA1(2)   ataatattaatagggtagaaattatttgttaatttttctgttgatagattttgtgaattttatttcacattttaaaagaaaaatatgcgagaacgacacc  20573200                                                                                                  ---                                                                                                  ---                                                                                                -----                                                                                             >>>>>>>>                                                                                         <------ZmHOX2a(1)                                                                                      --------->LBD16                                                              <---------CCA1(2)      <---------TOE1(1)                                                   <---------ZAT2                    <---------TOE2(1)                                         <------------CBF   ------>ZmHOX2a(1)     --------->ARR14(2)                          <------------CBF         <---------At4g35610            <-----------HVH21 --ALFIN1      <----------DOF2      <----------DOF2--------->At4g35610            <---------ARR14(2)<   gtttcaaataagaaacgctttcttcttgcattggctatctttccattgctctcagctacttcctctatctgagagaatagtccaggtccgaggaagaaga  20573300                                            --------->GLK1(1)                                            <---------GLK1(1)                                           --------->ARR14(2)                                        --------->ANAC46                                        <---------HSFB2a(2)                                        --------->HSFB2a(2)                                    <---------HSFB2a(1)                                    --------->GLK1(1)                                    --------->HSFB2a(1)                                    <---------GLK1(1)                                   <---------ARR11(1)                                   ------->TEIL                                   <---------ARR14(2)                                   --------->ARR14(2)                                   <-----------ARR10                                  <---------CCA1(2)                                              ---- --------->MYB52(1)          --------->ARR14(2)                                      <----------DOF2 ------>ANAC58               <---------ARR14(2)                                   --------->ANAC46  < ------>ANAC58              <------ZmHOX2a(1)                    <---------YAB1   --------->ANAC58  - ----->DOF2              --------->YAB1<---------LBD16        <---------YAB1      --------->ANAC58--- >TBF1                  <------ZmHOX2a(2)--------->LBD16  <----------DOF2      <---------REM1(2)<---- ----------ID1  <---------ICU4    <---------GLK1(2)    --------->ARR11(3)<---------ALFIN1<---------CCA1(2)   aagcaacgaagaagacgataatggcgatcaggattcgaatctccggaactctcttactatctttcttattcttctccactcttcacgctttctatcttcc  20573400          --------->ANAC46         ------>ZmHOX2a(1)  <------NtERF2 <-----------HVH21 ----->LBD16                                              <---------YAB1 -----------RAV1(1)                                    <----------DOF2 -------->ALFIN1       --------------->AtSPL8     ------>ZmHOX2a(2)             <---------GLK1(1) ------>LBD16      --------->HSFB2a(2)           <------ZmHOX2a(2)     --------->WOX13(1) -----LBD16        <---------HSFB2a(2)    --------->KAN4(2)          <---------YAB1    --------->GLK1(1)   cggtgtcgctcctcgcgattttcagaaggtactctatttctggttattccgatctcacttttgattacattatcaatctagggtttctgatatcaagtgc  20573500                                      --------->ATHB12                                      <---------ICU4                                      -------->ATHB1                                      --------->ATHB51          ----------->GT1            <---------AHL20(2)         ============================HOX2a_HOX2a        <---------ANAC46             <---------ATHB51         <---------ARR14(2)        <---------bZIP60(2)          <---------YAB1           <---------ARR11(3)        <---------ANAC55(1)          --------->ICU4           --------->ARR14(2)        <---------ANAC58    <-----------RAV1(1)               --------->GLK1(2)        <---------ANAC58   ------>ZmHOX2a(2)                 <------ZmHOX2a(1)        <---------TGA1a   <------ZmHOX2a(2)     <------MYB83<---------HSFC1(2)             <---------        <---------O2     <---------AGP1         <------MYB46(1)=============================HOX2a_HOX2a        --------->O2     <---------ARR14(2)    --------->MYB46(2)<----------DOF2           ----------     ----------->HVH21   --------->ARR14(2)    --------->MYB59--------->ARR11(3)          -----------   <----------DOF2       <---------ARR11(3)   <---------MYB55(1)------>ZmHOX2a(2)         -----------   ===============bZIP_DOF--------->CCA1(2)  <---------MYB52(1)<------ZmHOX2a(2)          -----------  <---------ANAC58       --------->AGP1    <---------ANAC46 --------->HSFC1(2)       <------ZmHOX2a(1)  <---------ANAC46       --------->ARR11(3)<---------ANAC58 --------->HSFB2a(1)  <---------ZAT14  <---------ANAC58      <---------CCA1(2)  <---------ANAC58<---------TOE1(2)     --------->ZAT14   gattgctttgacgtgtaattcaatccagatctgtgggaaattattgcgtttggtattgtcgaaggatctttaagcgttttcagtgtaggagtgccaataa  20573600       <------ZmHOX2a(1)                                             <---------YAB1 ------AGL15                                                    <---------At4g35610 ----->AGL15                      <---------At4g35610           --------->At4g35610   <---------ANAC46 ------>AGL2                      --------->At4g35610     <----------DOF2             <---------ANAC58 ------>AGL1                      --------->ZAT2        --------->HSFC1(2)            <---------ANAC58 ------>AGL3----------->GT1 <---------YAB1              <---------HSFC1(2) <---------YAB1    <-------   gagaatgtaggaatatgtgaaattgaattgatgatcagcttacaggttgtctaatggaagcttttgagctcatgtttatgctaaccttgcttgttctgtg  20573700                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    <                      ---------->DOF2                           --------->ATHB12                    <                    ----------->HVH21                 <---------At4g35610                --------->ANAC58              <----------DOF2                         <---------ZAT2        --------->TOE2(3)     ---            ------>ZmHOX2a(1)                         --------->ZAT2  <-----------GT1    --------->ANAC58        <---------ARR11(3)                            --------->At4g35610  ----------->RAV1(2)  -----        --------->ARR11(3)                   ---------->DOF2   <---------YAB1        <---------ZAT6 - --ANAC46 ------>ZmHOX2a(2)--------->ZAT18 <---------REM1(2)------>ZmHOX2a(1)      <---------At5g28300   atcacagggtgatcctctttatgtgaaagtgaacaaattatcgtctacaaagactcagcttccttatgatttctactacctgaattactgtaagcctccg  20573800  Previous    Next  AGI:  At1g55120.1    Description:  ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5); hydrolase, hydrolyzing O-glycosyl compounds / levanase. similar to ATCWINV5 (ARABIDOPSIS THALIANA CELL WALL INVERTASE 5), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G13784.1); similar to ATBFRUCT1/ATCWINV1 (ARABIDOPSIS THALIANA CELL WALL INVERTASE 1), beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G13790.1); similar to cell wall invertase precursor [Fragaria x ananassa] (GB:AAD10960.1); similar to cell wall apoplastic invertase [Vitis vinifera] (GB:AAT09980.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO Range:  from: 20570265    to: 20572953    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g55130.1    Description:  endomembrane protein 70, putative. similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT5G25100.1); similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT5G10840.1); similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT3G13772.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70590.1); similar to unknown [Populus trichocarpa] (GB:ABK94754.1); similar to putative PHG1A protein [Oryza sativa (japonica cultivar-group)] (GB:BAD54580.1); contains InterPro domain Nonaspanin (TM9SF); (InterPro:IPR004240) Range:  from: 20573321    to: 20576060    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version