Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     --------->ANAC58                <----------DOF2                    --------->ANAC46                                --      --------------->AtSPL8                       --------->ANAC58                           -------   <----------DOF2                            --------->ARR14(2)                            ---------  ------>ZmHOX2a(2)                           <-----------ARR10                        <---------bZIP60(2) ---------ARR11(3)                            <---------ARR14(2)                       <---------ANAC46 -------->ARR11(3)   <-----------GT1         <---------CCA1(2)                         --------->O2<- ---ANAC46      <---------DAG2    <---------ARR11(3)                                   <---------O2-- ---ANAC58   <-----------GT1      --------->ARR11(3)  ---------->DOF2               ----------->HVH21 ---ANAC58------->TEIL---------->ID1     --------->AtLEC2        --------->YAB1     --------->WRKY12-   ttgatctttatgtacttactttttttcgttttcaaagatgttgatgcaaatctacgcaaagactctaacagaatagagcataacccttgacgtcgaaagc  20552800                              --------->HSFB2a(2)                              <---------HSFB2a(2)                             ------>ZmHOX2a(2)                             ============================HOX2a_HOX2a                            =============================HOX2a_HOX2a                            --------->CCA1(2)                            <------ZmHOX2a(2)            <---------ICU4 --------->ARR11(3)            --------->YAB1 <---------ARR11(3)                                    <---------WRKY12           <---------ATHB51--------->ARR14(2)                                    --------->ZAT14   ------>NtERF2           --------->AGP1                                        <---------ZAT14 ------->ANAC46            <---------ARR14(2)                ---------->DOF2  --------->LBD16 -->HSFB2a(1)          ---------->DOF2                    --------->ANAC58   <---------HSFB2a(2) ->DOF2    <---------ATHB12<---------AGP1                 --------->ANAC58   --------->HSFB2a(2) --------ETT(1)    --------->ANAC58          --------->GLK1(1)              <---------LBD16 --------->HVH21   --------->ANAC58          <---------GLK1(1)          <----------DOF2 ----->NtERF2  <-----------HVH21 <------ZmHOX2a(1)------>ZmHOX2a(1)    <---------ICU4   tccgacaccatcaataatgtcaaggcaaagatctaggacatagaagggattcctcaagaccagcaaagactcatcttttccggtaaactgctagatgatg  20552900                                                     <---------TOE1(2)                                           --------->O2                    --------->GLK1(1)                                           <---------O2                    <---------GLK1(1)                                <-------TEIL         <---------TOE2(2)    --------->ARR14(2)                          ---------->DOF2<---------ALFIN1                 <---------ARR11(3)   ------        <---------At4g35610     ------------>CBF    <-----------RAV1(2)   --------->ARR11(3)---------    <----------DOF2 <---------ARR14(2)  <---------ZAT18                   <---------ARR14(2)-------->P <---------ALFIN1   --------->ARR14(2)--------->ANAC46          --------->ALFIN1      <---------ARR11(3)   gccctactttggctgattacagtatccaaaaagattcaatactccacttggctctcaggttgagaggtggtatgcagatattcgtcaagacccttaccgg  20553000                                                        <------ZmHOX2a(2)                                                        --------->CCA1(2)             ----------->RAV1(1)                                                       --------->ARR11(3)           <------ZmHOX2a(2)                                                       <---------ARR11(3)          <---------ARR14(2)                                                       --------->ARR14(2)       --------->HSFB2a(2)                                  <------------CBF     <---------ARR14(2)--------->GLK1(1)                         --------->ZAT14             ----------->ARR10   <---------GLK1(1)                         <---------ZAT14      ---------->DOF2    --------->ANAC58  --------->ARR14(2)                       <---------ZAT14------------>CBF --------->AGP1   <---------GLK1(1)------->GAMYB ----->GT1           <---------------AtSPL3--------->YAB1        --------->ANAC58--------->LBD16   -- >MYB52(1)           <---------------AtSPL8--------->TOE2(3)--------->ANAC46   <---------LBD16     <-   ttaaaccattaccctagaagttgagagtacagacactattgacaatgttaaagctaagatccaagacaaggaaggaatccctccggatcaacagagacta  20553100                                                                                            <--------                             <---------ALFIN1                                             <---------MYB46(3)     --------->LBD16    <------MYB46(1)                                      --------->At4g35610     <---------TOE1(2)  <------MYB83                              --------->ANAC46       --------->ALFIN1    <---------ANAC46    <---------MYB46(3)                      --------->ZAT6          --------->LBD16   <---------LBD16     <---------AtMYB61                        <---------ALFIN1       <---------ANAC46 ------->ARR14(2)    <------ZmHOX2a(1)               ---------->DOF2         <---------At4g35610 --------ARR14(2)  <---------TOE2(3)   <---------At4g35610   <---------WRKY38(1)    --------->GLK1(2)   atattcgcgggtaaacagcttgaggatggtcgcactcttgcagattacaacatccaaaaggagtcaacacttcaccttgtgctgagactccgtggtggga  20553200                              --------->ANAC58                                      --------->CCA1(2)                              --------->ANAC58                        <---------ANAC55(2)  <---------ARR11(3)     ---------->DOF2                              <---------ANAC58  --------->ARR11(3)   --------->LBD16                 ----------->HVH21 --------->REM1(2)  <---------GLK1(2)   <---------HSFB2a(2)          <---------ZAT2     <---------ANAC58     --------->CCA1(2)  --------->ARR14(2)  --------->HSFB2a(2)          --------->ZAT2     <---------ANAC46    <---------ARR11(3)  <---------ARR14(2) <---------LBD16   <---------HSFB2a(2)          <---------DOF5.7(2)   --------->ARR11(3) -ANAC46            --------->MYB52(1) --------->HSFB2a(2)        --------->DOF5.7(2)<-------TEIL   tgcagatttttctcaagactcttaccggaaagacgaaagttttggaagttgagagctcggacacaatcgataacgtgaaggccaagattcaagatataga  20553300                                                                                                 ----               ------>MYB46(1)                                                            <----------               ------>MYB83               --------->ZAT2                                  <---------ALFIN1              ----------->RAV1(1)         <---------ZAT2                              <---------ARR14(2)             --------->AtMYB61            --------->At4g35610                         --------->ARR14(2)        --------->AtMYB61             --------->ANAC58                               <---------HSFB2a(1)        --------->MYB46(3)            --------->ANAC58                               <------ZmHOX2a(1)   ------>ZmHOX2a(2)              --------->ANAC58                                   --------->HSFB2a(1)  <------ZmHOX2a(2)               --------->ANAC58                             --------->HSFB2a(2)  --------->PCF2                  --------->ANAC46                             <---------HSFB2a(2) --------->ARR14(2)         <----------DOF2            --------->ETT(1)        <-----------RAV1(2) <---------ARR14(2)       <---------YAB1  <---------At4g35610     <---------YAB1  <------ZmHOX2a(1)<-   agggatcccaccagaccaacatagacttatctttgcaggcaagcagctcgaagatggtcggactcttgctgattacaacgtccaggaggattccaccctt  20553400                              --------->ARR11(3)                              <---------GLK1(2)   <---------ATERF1(2)                    <---------ANAC46              --------->ATERF1(2)                 --------->ALFIN1                <---------LBD16                --------->LBD16            <-----------------AGL1               <---------ANAC58            ----------------->AGL1               --------->ANAC55(2)        --------->ARR11(3)               <---------ANAC55(2)        <---------ARR11(3)               <---------ANAC46    <---------ANAC58               <---------ANAC55(1) <---------ANAC58--------->ANAC46            --------->GLK1(2) --------->ARR14(2) --------->RAP2.6(3)    ------>ZmHOX2a(1)         <---------ARR14(2)-------->P ----->REM1(1) <---------ANAC58    <---------ANAC46--------->LBD16 -GT1       <---------ARR14(2)<---------ARR11(3)--------->MYB52(1)             <---------ZAT14     -- --------At4g35610<---------MYB46(3)  --------->REM1(2)                        --------->ZAT18    ---   catctccttctgagattccgtggtgggatgcagattttcgtgaagacccttaccggcaaaaccattaccctagaagttgagagctctgatacaatcgata  20553500                                           ------>MYB83                                           ------>MYB46(1)                                          ----------->RAV1(1)                                          --------->MYB52(1)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                         --------->AtMYB61                               ------>ZmHOX2a(2)                              <------ZmHOX2a(2)                       <---------ZAT2                    ---------->DOF2 --------->AtMYB61                 --------->At4g35610                 ====================HOX2a_HOX2a                      <---------At4g35610             <-------TEIL     --------->PCF2 ------->GAMYB      ---------->DOF2            --------->CCA1(2)--------->ARR14(2)                <------ZmHOX2a(1)            --------->GLK1(2)<---------ARR14(2)             <---------AtLEC2 ------->TOE1(3) =====================HOX2a_HOX2a       <----------DOF2            --------->ETT(1) -------->RAV1(2)<------ZmHOX2a(1)  --------->MYB46(3) <---------ICU4 --------->ZAT2           <-----   acctgaaggccaagattcaggacaaagaagggatcccaccagaccaacagagactcatctttgcaggaaagcagctcgaagatggtcggactcttgcaga  20553600                                                                          ----------->HVH21                                                                          --------->WRKY12                                                <---------ANAC46        <----------DOF2                                 --------->At4g35610           <---------ANAC46                                 <---------At4g35610      <---------ARR14(2)                ---------                      --------->ANAC46        <---------MYB46(3)  ---------->DOF2           <--------                    --------->ZAT6   <---------ANAC58     <---------GLK1(2)            --------->AtMYB61                    <---------ALFIN1 <---------ANAC58     --------->ARR11(3)     ---------->DOF2         ---------->DOF2        <-----------RAV1(1)       <---------ARR11(3) <---------ANAC46 ----At4g35610   <---------WRKY38(1) <---------ANAC46     --------->ARR14(2)<---------LBD16 ---------   ttacaacatccaaaaggagtcaacacttcaccttgtgctgcgtcttcgtggtgggatgcagattttcgtaaagactttgacgggaaagaccatcacgctt  20553700  Previous    Next  AGI:  At1g55060.1    Description:  UBQ12 (UBIQUITIN 12). similar to UBQ3 (POLYUBIQUITIN 3), protein binding [Arabidopsis thaliana] (TAIR:AT5G03240.3); similar to UBQ3 (POLYUBIQUITIN 3), protein binding [Arabidopsis thaliana] (TAIR:AT5G03240.2); similar to UBQ4 (ubiquitin 4), protein binding [Arabidopsis thaliana] (TAIR:AT5G20620.1); similar to polyubiquitin [Thlaspi caerulescens] (GB:AAY86773.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) Range:  from: 20553200    to: 20553892    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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