Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         --------->ARR14(2)       --------->SPL7       <-----------ARR10       ------->TEIL       <---------ARR14(2)                 *TSS   <---------LBD16      <------NtERF2                   --------->ICU4      ------>NtERF2                   <---------YAB1  --------->LBD16                ----------->HVH21--------->LBD16  ------>NtERF2                 --------->At4g35610       --------->AHL20(2) <---------LBD16 <---------AtMYB61----------->RAV1(1)     <---------AHL20(2) <---------RAP2.3(2)       <---------ARR14(2) --------->GLK1(2)                  ----------->GT1 <---------RAP2.6(2)     <---------YAB1--------->ATHB12  --------->AHL20(2)   <---------ANAC46     -- ---------LBD16<----------DOF2  <---------At4g35610 <------ZmHOX2a(1)        --------->ATHB12      <- --->ICU4--------->AtMYB61<------ZmHOX2a(1)   <---------ARR14(2)          <------------CBF  <--------   attccggcggacctccgctttggtattaggattcagcgacatgattagaatccaggaaaaaaaatttcgatgaagggattgtttggataatttgttactc  20538100                 --------->ANAC55(2)                 <---------ANAC55(2)                 --------->ANAC46                 --------->ANAC55(1) <---------ANAC46                 --------->ANAC58  <---------ANAC46       <---------ALFIN1   ------------>CBF   <<<<<<<<<GATA-2        ------->GAMYB   <<<<<<<<<GATA-4       --------->ANAC46   <<<<<<<<<GATA-1       --------->ANAC58                                     ---------->DOF2   <<<<<<<<<GATA-3    --------->MYB46(3)                                 <---------------AGL15 --------->WOX13(1) ----------->RAV1(1)                               <---------GLK1(1)         ----- ---------->CBF<---------ALFIN1  <---------ANAC58                     --------->GLK1(1)         <---- -----ZmHOX2a(2) --------->ANAC58<---------ANAC58                --------->DAG2         <---------YAB1 ---GT1--------->ANAC46  --------->ANAC58<-----------TBP        ---------->DOF2   --------->AHL20(2)   gatcaatccacacagacacacgcaacaacgcaatgggttgtgtatatatagatgatgcagagaagaaaaaggaaaccctacaaagaaaatatgactaatt  20538200                                                      --------->AHL20(1)                                                     --------->AHL20(2)                                                     <---------AHL20(2)                                                  --------->YAB1                  --------->AHL20(2) --------->AHL20(1)                                 <---------YAB1                  <---------AHL20(1) <---------AHL20(1)       --------->ANAC58        --------->YAB1                  <---------AHL20(2) --------->AHL20(2)       --------->ANAC46     <---------ICU4             <------ZmHOX2a(1)       <---------AHL20(2)   <-----------GT1          --------->YAB1           <---------TOE2(3)    <---------YAB1   <---------YAB1       <-----------GT1<---------YAB1           <---------TOE1(3) <-----------GT1   --------->YAB1 --------->ANAC58    <---------YAB1 ---->AHL20(2)    --------->AHL20(1)--------->AHL20(2)--------->AHL20(2)       <---------YAB1  ------ -----AHL20(2)   --------->AHL20(2) <---------AHL20(2)<---------AHL20(2)       <---------AHL20(2)   aaaaaatagaattaaggaaataaattgtttttttctaattaaatttctcttataattaaattacaagacaaattaccaatttttattattatgaaaaatg  20538300       <---------YAB1      --------->AHL20(1)      --------->AHL20(2)      <---------AHL20(2)      <---------AHL20(1)                                     <---------AHL20(2)     --------->AHL20(2)                                     <---------AHL20(2)     --------->YAB1                                         --------->AHL20(2)    <---------YAB1----------->GT1                           <---------AHL20(1) --------->AHL20(2)                                         --------->AHL20(1) --------->AHL20(1)                                  <---------YAB1          <----------DOF2 <---------AHL20(1)                             <---------ICU4  <-----------GT1 <---------AHL20(2)                     <---------YAB1  <---------YAB1------->GAMYB    ----------->GT1 ----->GT1 <---------AHL20(2)     ---------->DOF2  <-----------GT1 <-----------GT1  -------->P   taatttattatattaaaaatttgttaaacaaaaactaaaagtatgcttactaattactataatttatttcaaccctctgctttgctaacctgtataaacc  20538400                                        ------>MYB46(1)                                        ------>MYB83                                      ------->GAMYB        ------->GAMYB                       <-----                                      <---------MYB59   --------->MYB52(1)            ----------->RAV1(1)                                   <-----------GT1 ------>MYB83                       <---------ALFIN1                                   --------->MYB52(1)--------->YAB1                 ------>NtERF2             <------ZmHOX2a(2)<---------ARR11(3)   ------>MYB46(1)        <------------CBF    >>>>>>>   aaaatacaaaaatcgatccaaaccgtgttcaatgtcttaaccgaaccaaaaccgaacataaccgaatataaaccgaaattggtctctgccacatcgagtg  20538500                                                                <---------At4g35610                                                         <---------ICU4                                                    <-----------------AGL3                                                    --------->TOE2(3)                                                    --------->TOE1(3)                                         <---------At4g35610    --------->At4g35610                                         *TSS <---------HSFB2a(2)                              <-----                                       <---------RAP2.6(2)    <---------RAP2.6(2)             -------            --------->ANAC58      <---------AtLEC2  <---------MYB59                        --------->ANAC58 ----ZAT6   --------->ANAC58    <-----------HVH21   ----------------->AGL3                 --------->ANAC46 >>TAC1 <-----------GT1        <----------DOF2--------->HSFB2a(2)                          --------->ANAC58   ttactgggtttaacaagcgaaatgacataaaccctttcatggctgcttctgcaacctaaaaatggctgcttcaatctctcttcttctcatcaaacgcatc  20538600                               <----------DOF2                               <---------DAG2                             ------>MYB46(1)                             ------>MYB83                           --------->DEAR4(1)                           --------->DEAR3(1)                           --------->DREB2C(2)                           ------->GAMYB                          --------->DEAR3(2)                          <------NtERF2                         ------>NtERF2                         --------->MYB52(1)                     --------->ANAC58                                           <---------ALFIN1                     --------->ANAC58                                         ----------->RAV1(1)                     --------->ANAC46                                      --------->ANAC58                   ---------->DOF2             --------->ZAT6              --------->ANAC58 ----CCA1(2)   --------->TOE2(3)       <---------ATHB12                  ---------->DOF2          --- >TEIL         --------->TOE1(3)     <-----------GT1   <-----------GT1  --------->ANAC46  -------->P<   tctcacttgcacataaaccctaaaagccaccgactttttcaaccatttctcactaaatcactctctacttctccacaaagcaacactgaatcaacccatg  20538700                                                                        <-----------TGA1                                                                        <-----------HVH21     --------->YAB1                                                    --------->ANAC58 --------->ANAC58  ------>MYB46(1)                                                      --------->O2---------->DOF2  ------>MYB83                                                         --------->ANAC58 --------->ANAC46 ---->TEIL                                       <------ZmHOX2a(2)     --------->ANAC46 --------->ANAC58 ---------MYB59      <---------CCA1(2) <-------TEIL                    --------->bZIP60(2)   aacctaatcacaaaccctcttctctatcttctcgtcttagcttcgttttcgatcaaatcgatgctattgagaaacgtcactctgagaaagacgaaaccct  20538800                                                                                   <---------HSFB2a(2)                                                                               ------>ZmHOX2a(2)                                                                             <---------ARR11(1)                                                                             --------->ARR11(3)                                                                             <---------ARR11(3)                                                                             <---------ARR14(2)                                                                             <-----------ARR10                                                                            <---------CCA1(2)                                                                            <---------ARR14(1)                                                                           --------->LBD16                                                                         ------>ZmHOX2a(2)                                                                         <---------LBD16                                                                        --------->ARR14(1)                                                                        --------->CCA1(2)                                                                        <------ZmHOX2a(2)                                                                       --------->AGP1                                                                       --------->ARR14(3)                                                                       --------->ARR11(1)                                                                       <---------ARR14(2)                                                                       --------->ARR14(2)                                                                       <---------ARR11(3)                                                                       <---------ARR14(3)                                                                --------->ANAC46   --------->HSFB2a(2)                                                              <---------ALFIN1<------ZmHOX2a(2)                    --------->WOX13(1)                    <---------At4g35610--------->ARR14(2)                  <------NtERF2                           --------->At4g35610<---------AGP1                <---------ANAC58                      =========================HOX2a_HOX2a                <---------ANAC58                      ================================HOX2a_HOX2a                <---------ANAC46                      ------>ZmHOX2a(1)--------->ARR11(3)           <---------ANAC58                           ===============================HOX2a_HOX2a           <---------AtLEC2                        ------>ZmHOX2a(1) ----------->ARR10           <---------ANAC58     --------->ANAC46   ============================HOX2a_HOX2a   --------       <---------ANAC58         --------->ANAC58   ==================================HOX2a_HOX2a       <---------ANAC58         --------->ANAC58   ===================================HOX2a_HOX2a <--    <---------ARR14(2) >>>>>>>>>RAP2.2----------->GT1 ==========================HOX2a_HOX2a  --------    --------->ARR14(2) --------->TOE2(3)           =============================HOX2a_HOX2a  <-------   tgagcgtattcgtgcttggcgtcaatctaaacagacgcatcagttaaaaactcctccttctgctccacaacaagatccggatcttagagaagtcgaatcc  20538900         -------->HAHB4         --------->YAB1        <---------YAB1        <---------ATHB12         <---------ANAC58        --------->ICU4       <---------ANAC46       <---------TOE2(3)  <-----------RAV1(1)       <---------GLK1(2)        --------->DAG2 <---------ANAC46     <---------ANAC58    <---------ARR14(2)  <-------GAMYB---------->DOF2 ->GLK1(2)            <---------ANAC58    --------->ARR14(2)  <---------At4g35610 -------MYB52(1)   <---------GLK1(2)  <---------At4g35610     --------->At4g35610           <------MYB46(1) ->ARR14(2) --------->AHL20(2)   <---------ANAC58<---------WOX13(1)     <------ZmHOX2a(1)   <------MYB83 --ARR14(2) <---------AHL20(2) <---------YAB1 <---------YAB1 --------->MYB52(2)            <---------AtMYB61   gttgtgtctaatgataaattggattcttgtgttgtgcttgagccgattcagattgattctggtgagttgagtaaggagaaaggtgttattgagttggtcc  20539000  Previous    Next  AGI:  At1g55035.1    Description:  pseudogene, putative importin alpha, similar to importin alpha GI:3342556 from (Arabidopsis thaliana); blastp match of 66% identity and 2.6e-167 P-value to GP|13752562|gb|AAK38727.1|AF369707_1|AF369707 importin alpha 2 {Capsicum annuum} Range:  from: 20536511    to: 20538042    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g55040.1    Description:  zinc finger (Ran-binding) family protein. similar to zinc finger (Ran-binding) family protein [Arabidopsis thaliana] (TAIR:AT1G70650.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17589.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876) Range:  from: 20538541    to: 20542780    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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