Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 --------->YAB1                                              --------->GLK1(1)              <---------YAB1                                               --------->HSFB2a(1)             --------->ARR11(3)                                           <---------ARR14(2)             <---------ARR11(3)                                           --------->ARR14(2)          --------->AHL20(2)                                             <---------GLK1(2)     ------          <---------ICU4                                             <-----------GT1 --------->ANAC58       --------->YAB1              <---------YAB1               <---------YAB1       --------->ANAC46      <---------AHL20(2)           <---------TOE2(3)            <---------AHL20(2)   --------->ANAC58  <---------YAB1                <---------AHL20(2)            --------->YAB1       <xxxxxxxxxxxxxxxxx  --------->AHL20(2)            <---------ATHB51           --------->TOE2(3)    ------>ZmHOX2a(1)  <---------AHL20(2)         <---------AHL20(2)           <---------ANAC46------->TEIL         ------ ----YAB1 --------->YAB1     --------->AHL20(2)          <---------TOE2(3)<---------ARR11(1)  <------ -YAB1--------->AHL20(2) <---------YAB1                 <-----------GT1  <---------CCA1(2)  xxxxxxxxx   agttttaattaataatatcatggtattcttataaattatggtatcaatttgacaaattttacgtttataattttcgaatctcctaacaagcagtcaataa  20529000                                                             <------MYB83                                                  <---------GLK1(1)                                                 --------->ARR14(2)                                                 <---------ARR14(2)                                                <------ZmHOX2a(1)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                          ==========================HOX2a_HOX2a                          ------>ZmHOX2a(2)  <------ZmHOX2a(1)                          =============================HOX2a_HOX2a                        xxxxxxxxxxxxxxxx>smallRNA(i)         <------MYB46(1)                    xxxxxxxxxxxxxxxx>smallRNA(s)====================================HOX2a_HOX2a                  <xxxxxxxxxxxxxxxxsmallRNA(i)  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       xxxxxxxxxxxx    --------->AHL20(2)xxxxxxxxxxxxxxx>smallRNA(le3)    <---------ANAC58        <---------GLK1(2) --->AHL20(2)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------ANAC58      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  ------>ZmHOX2a(1) --->YAB1<-----------GT1<---------ARR11(3)  XXXXXXXXXXXXXXXXXXXXX>MIR447A/B  ------>ZmHOX2a(2) ---ATHB12      --------->ALFIN1     <---------------AGL15  <---------AtMYB61================HOX2a_HOX2a xxxxxxxxxxxxxx>smallRNA(le3)       ----------------->AGL1 <--------P      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   tattctataaataaccaagtggtcgtgatctactggtttccacttgaggaggaattgccttgttggtctaggttagggatcgattctcctcaagtgccaa  20529100                                                                                             xxxxxxxx                                                                                             --------                                                                                        xxxxxxxxxxxxx                                                                           <---------YAB1 xxxxxxxxxxx                                                                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                <-----------HVH21       xxxxxxxxxxxxx                                                                <-----------TGA1        xxxxxxxxxxxxx                                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xx                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)  xx                                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  xx                                                            ------>ZmHOX2a(2)          xxxxxxxxxxxxxx                                                           <---------HSFB2a(1)        --------->ARR14(2)                                                           --------->HSFB2a(1)        xxxxxxxxxxxxxxx                                                           <------ZmHOX2a(2)          <---------ARR14(2)                                                           <---------HSFC1(2)  xxxxxxxxxxxxxxxxxxxxxx                                                          <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  xxxx                                                          <---------ARR11(3)   xxxxxxxxxxxxxxxxxxxxxx                                                          --------->ARR14(2)   <---------ICU4<-------                                                          --------->ARR11(3)  <---------YAB1xxxxxxxxx                            <----------DOF2               <---------ARR14(2)--------->YAB1xxxxxxxxxxx                            <---------DAG2              xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxx            --------->TOE2(3)     ---------->ID1    --------------------->WRI1--------->ICU4<--------      <---------ICU4 --------->MYB52(1)    <------------------------ANAC81 <---------ATHB12 --------- xxxxxxxxxxx>smallRNA(le3)------->TEIL    <------------------------ANAC81  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   attgttagtcatttccataaactaaacgaacttttcggcgttttttttttttttttttgggatcttcgtcataccctatcataattcaaatacggtggta  20529200   --------->ALFIN1 xxxxxxxxxxxxxxx>smallRNA(si3) ->MYB55(2) xxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxx>smallRNA(le3) xxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxx>smallRNA(si3) xxxxxxxx>smallRNA(si3)                                 <---------AHL20(2) x>smallRNA(si3)                            --------->ANAC58 xxxxxxxxxxxx>smallRNA(fl3)                --------->DAG2 x>smallRNA(i2)                           ---------->DOF2 --MYB46(3)                         <---------AHL20(2) <---------ARR11(3) xxxxxxxxxxxxx>smallRNA(si3)       --------->AHL20(2)  <---------AHL20(1) xxxxxxxxxxxx>smallRNA(i2)    --------->AHL20(2)       --------->ARR11(3)<---------TOE2(3) xxxxxx>smallRNA(si3)         --------->YAB1--------->ANAC58   <---------TOE2(3) -AtMYB61             ---------->DOF2  --------->AHL20(2)   <---------AHL20(2)                  <---- >ALFIN1     <---------AHL20(2)--------->AHL20(1)    ------->TEIL       ---------->DOF2 <-----------GT1   gtaatgtgtgtgtaatttatagatgaaagaaataatattaaataaaaagcaaatgtatatattttatggtatactaaagttagaagttttaaaccatttc  20529300                                                                        --------->ANAC46                                                                        --------->bZIP60(2)                                                                        --------->ANAC58                                                                      <---------ALFIN1                             <---------ALFIN1              ------>MYB46(1)                     ---------->DOF2       ----------->TBP ------>MYB83 <---------ALFIN1 <---------ALFIN1         ----------->GT1   ----------->RAV1(1)          --------->DEAR3(2) *TSS--------->YAB1        ------------------------>ANAC81    --------->AHL20(2)<----------DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <---------AHL20(2) --------->DAG2---------->ID1   --------->MYB52(1)--------->ANAC58 --------->ANAC46 -------GT1   --------->AHL20(2)    <-----------GT1--------->ANAC46--------->ANAC46    --------->ANAC46   acatattaaaaatgaaaaaaatgaaaaggcaacacatttttccctataaataccccaaaccgactttaatcgccacaccattcataaacacacaccgaga  20529400                                                                                                 ----                                                                                                <----                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                              ------>NtERF2                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                             --------                                                                                             <-------                                                                                             <-------                                                                                             --------                                                                                            ---------                                                                                            <--------                                                                                           <---------ATERF1(1)                                                                                          <---------DEAR3(1)                                                                                          <---------ATERF1(2)                                                                                        --------->MYB52(1)                                                                                    <---------At4g35610                                                                                    --------->At4g35610                                                                                  ------>ZmHOX2a(2)                                                                                 --------->GLK1(1)                         <---------At4g35610                                     <---------At4g35610                         --------->At4g35610                                     <------ZmHOX2a(2)           <---------AHL20(2)                                <---------ARR11(3) --------->ARR14(2)           --------->AHL20(1)                                --------->ARR11(3) <---------ARR14(2) --           --------->AHL20(2)                            ---------->DOF2        --------->ARR11(3) <-          <---------AHL20(2)        --------->YAB1  --------->ANAC46            <---------ARR11(3)<--          --------->AHL20(2) ----------->GT1        --------->ANAC58   --------->ARR11(3) --------->DEAR3(1)   --------->YAB1        <---------ZAT14            --------->ANAC58   <---------ARR11(3)--------->DEAR3(2)   gaaaatcagaaattaaattagagagagagcagagtgaatcaaaacttcaacttcacccaaaaagatgttcggagaacttagggatctgctcaccggcggc  20529500 ----->LBD16 -----ANAC46 --->At4g35610 ----At4g35610 -NtERF2 --->ATERF1(1) --->RAP2.3(1) ----LBD16 ---RAP2.3(1) ---ATERF1(1) ---ORA47(2) ---ERF1 ---DEAR4(2) ---RRTF1(1) ---RAP2.6(1) --RRTF1(3) --RAP2.3(2) --RAP2.3(3)                                    >>>>>>>>>TBF1 --RRTF1(2)                              <---------At4g35610 ->ATERF1(2)                             --------->At4g35610 --ATERF1(2)                         <---------ARR14(2) --DEAR3(1)                          --------->ARR14(2) ->DEAR3(1)                        --------->MYB55(2) >ATERF1(1)                        <---------MYB46(3)        >>>>>>>>>>GATA-1 -ABI4(1) --------->DEAR3(1)      --------->ALFIN1   --------->HSFB2a(1) ------->ARR14(2)            --------->MYB52(1) <---------------AtSPL3                       ------>ZmHOX2a(2) --------ARR14(2)   ----------->GT1--------->ABI4(2) <---------HSFB2a(1)                <---------HSFB2a(2) ----NtERF2------>NtERF2---------->DOF2 <---------YAB1    ------>ZmHOX2a(1)             --------->HSFB2a(2)   ggaaatgagacgacgacgaagaaggtgaaaggaacggtggttctgatgaagaagaacgtcctcgatttcaacgatttcaatgcttcgtttctcgatcgtc  20529600                                                                        <---------ARR11(3)                                                                        <-----------ARR10                                                                        --------->ARR11(3)                                                                  --------->ANAC58                                                                  ----------->GT1                                                                  --------->ANAC58                                                                 --------->DAG2                                                         <-----------RAV1(2)                                                    --------------->AGL15                                                    <---------------AGL15                                                   <-----------------AGL1         <---------HSFB2a(2)                       <-----------------AGL2         --------->HSFB2a(2)                     <-----------GT1---------->DOF2 <---------DAG2         <---------LBD16               <---------At4g35610 ----------->GT1--------->TOE2(3)    ------->TEIL      <-----------GT1  --------->At4g35610<---------TOE2(3)     <----------DOF2    <-   ttcatgaatttctcggaaacaaaatcactcttcgtcttgtaagctctgatgttactgattcaggtaaaaagcaaaatctcaactttttgaatttcgaaat  20529700                      ---------->ID1                       <---------ANAC58                    --------->MYB52(2)                     <---------ANAC58                    <---------MYB46(3)                   <-----------GT1                       ------                   <---------TOE1(2)              <-----------GT1                             -------         ---------->ID1  <----------DOF2     <---------AHL20(2) --------->HSFB2a(2)     -------------       <------------------------ANAC81       --------->AHL20(2) <---------HSFB2a(2)  ------>ZmHOX2a(1) ----------GT1    <---------MYB52(1) --------->ATHB12<----------DOF2          <-----------GT1--------   ttttcaattttgtcttcttcgtttgttcttttgaatttttgatttgtttaattttctttttgcgttctcgagtttttttttttcttcctactaggtaaag  20529800                               --------->AHL20(1)   <---------ZAT14       <---------AHL20(2)      <---------AHL20(1)   --------->ZAT14 ----->GT1                <---------YAB1            --------->ZAT18                               --- -->DAG2            <---------YAB1         <---------AHL20(2)                      --------->ATHB12 < -->AGL15        --------->ZAT18<---------YAB1<----------DOF2                      <---------ICU4 <-- -->DOF2   <---------AHL20(2)  <---------ARR11(3)   <---------ZAT18------>ZmHOX2a(1)    <---------YAB1   taatttgttttaatttaagttcacgattatcaatatttttgttattttcttttgtgcactatatatatcctaatccattacacatttattgcgattggaa  20529900  Previous    Next  AGI:  At1g55020.1    Description:  LOX1 (Lipoxygenase 1); lipoxygenase. Identical to Lipoxygenase 1 (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to lipoxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G72520.1); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase/ metal ion binding / oxidoreductase, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to LOX5, lipoxygenase [Arabidopsis thaliana] (TAIR:AT3G22400.1); similar to lipoxygenase 1 [Brassica napus] (GB:AAO03558.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17595.1); similar to bact Range:  from: 20529375    to: 20533940    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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