Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          --------->ANAC46                                        --------->ANAC58                                        --------->ANAC58                                     <-------                                 --------->YAB1                                              --------                                 <---------ICU4                                              <-------                            <---------GLK1(2)<---------YAB1                                 <--------                    <---------YAB1      --------->ANAC55(2)                  <---------At4g35610               <---------ALFIN1  <--------HAHB4                              --------->At4g35610   -- --------AHL20(2)  --------->At5g28300  --------->ANAC55(1)        --------->ANAC58       <---------ZAT14 -At4g35610 --------->REM1(1)   <---------YAB1      <------NtERF2  --------->ANAC58       --------->ZAT14   ttttatgtgttccttcaacactgtgattcagattatcattacacgttattagtcggcatttgcctagacacgaagatggagctaagtttcagtttacggg  20520300                                                                                    --------->ANAC55(1)                                                                                    <---------ANAC55(2)                                                                                    --------->ANAC46                                                                                    --------->ANAC55(2)                                          --------->ZAT2                           <-------TEIL                                          <---------At4g35610                   --------->CCA1(2)                                          <---------ZAT2            --------->GLK1(1) --ANAC58                                 --------->At4g35610       --------->CCA1(2)           ----- ->ANAC55(2)             --------->AHL20(1)                        <---------ARR11(3)           <---- --ANAC58                --------->ARR11(3)                        --------->ARR11(3)  ------->TEIL -LBD16                  <---------AHL20(1)         --------->GLK1(1)          <---------AHL20(1) ------->KAN4(2) <----------DOF2   ----------->HVH21<---------GLK1(1)          --------->ARR11(3)   tcattctcttgagataagtctttaaaaaatattgaatatgaccctgctcactggaaatcaaacccataagatatcaactaatatatacgtatcatttaca  20520400                                                                      <---------CCA1(2)                                                                    <---------ANAC46                <             --------->ARR11(3)                          <---------AtLEC2--------->YAB1           <--   <---------TOE2(3)  <---------AHL20(2)    --------->At4g35610     <---------ANAC58             <--- ---------->AGL15    --------->AHL20(2)  ---------->DOF2<-------TEIL<---------ANAC58             ---- -----------AGL15----------->GT1  ----------->GT1      --------->AtLEC2<---------ARR11(1)<---------ALFIN1   aaattaagaaaaacagaacttgataaaattcaaaaatggaaataaaagctgaagaacatgcatggagagggcgtatcatgctcatttgatcacaccttga  20520500                                                                 <------NtERF2                                                                <---------RAP2.6(3)                                                                ------>NtERF2                                                               --------->RAP2.3(3)                                                               --------->RAP2.6(2)                                                               ------->GAMYB                                                               --------->RAP2.3(2)                                                               --------->DEAR3(1)                                                              --------->RAP2.3(1)                                                              --------->MYB46(3)                                                              --------->DEAR3(2)                                                              --------->ATERF1(1)                                                             <---------ATERF1(1)                                                             ------>MYB46(1)                                                             --------->ZAT2                                                             --------->At4g35610                                                             ------>MYB83                                                             <---------At4g35610                                                            --------->ANAC46                                                          --------->MYB46(3)  <---------AHL20(2)                                ----------->RAV1(2) --------->YAB1                                     <---------At4g35610         <---------------AtSPL8 ---------YAB1                         ----------->GT1------->GAMYB       ------------>CBF   -------- -------ICU4 <------ZmHOX2a(2)    --------->ANAC58  --------->At4g35610 --------->ZAT18      -------- ------YAB1 --------->ARR11(3)    --------->ANAC46<---------WRKY38(1)   <---------ZAT18      -------- ----->ICU4 <---------ARR11(3)    --------->ANAC58<---------WRKY12  <---------STY1(1)   --------->At4g35610   ttattatatcgctagatcatatgtcattctatctacatgccatgttaataagtcaactgaaccagccgccctagtgaacaatgtagtactagctcaagcc  20520600                             --------->ATHB12                        ----------->RAV1(1)                     --------->ANAC58                     --------->ANAC46                     --------->ANAC58                  <------ZmHOX2a(2)                                              <---------YAB1  <---                 --------->ARR11(3)                                              ----------->TBP-----               ----------->ARR10                                               --------->YAB1 <------        <---------MYB52(1)   <---------ICU4                            <---------ICU4         ------- ->ANAC46 <---------TOE2(3) --------->ICU4                <---------MYB52(2)  <---------YAB1<-------TEIL ->ANAC58 <---------TOE1(3) <---------YAB1     <---------WOX13(1)      <--------HAHB4      <--------P ->ANAC58 <---------TOE2(2)--------->TOE2(3)  <------------CBF        <---------YAB1    <---------TOE2(3)   aaaccagtcgcttaggttagatcaggcaacattattagctacttgtctaattgatgacaaactaacttcaccatcatttcattataaatagaggttgatc  20520700                 <---------ALFIN1                 --------->ANAC46          <-----------GT1       <---------ICU4                                                        <---------ANAC58       --------->ATHB51                                                      <---------ANAC58    ----      <---------YAB1                                                         <-------GAMYB       <---      --------->ICU4     <-----------ARR10                           <---------MYB52(1)---------->ID1 ------SPL7      --------->ANAC58                            --------->AtMYB61<--------P        <---- ->ZmHOX2a(2)    --------->ANAC58                            <---------ICU4 <---------MYB46(3)  <---- ---ARR11(3)   <---------ALFIN1                          --------->MYB46(3)<---------YAB1      <----- -->ARR11(3)<-----------GT1                         --------------->AtSPL8 <---------TOE2(3)<--------   ttacgctcattatttctccacaccacaaatctaagtagtaagtcatggctaagttttgtaccaccattacccttattttggttgctcttgttctctttgc  20520800                                                                          <-----------GT1                                                                      -------->HAHB4                                                                      <--------HAHB4                                                                      <---------ICU4                                                                      --------->ATHB51                             <---------ANAC58                         --------->YAB1                             <---------ANAC46                         <--------ATHB1                             <---------ANAC58                        --------->ICU4                        --------->At4g35610                     --------->TOE2(3)             -------                      --------->YAB1                  <----------DOF2--------->AHL20(2)       ------- ----------->AGL15   <---------YAB1               <-----------GT1    <---------YAB1           ------- ------------AGL15  <<<<<<<<<<GATA-2           <---------GLK1(2)--------->YAB1                <------ -------------AGL3  <<<<<<<<<<GATA-1           <---------ARR11(3)    <---------ATHB51         ------- -------------AGL2  <<<<<<<<<<GATA-4           --------->ARR11(3)  --------->YAB1            -------- ----At4g35610      <<<<<<<<<<GATA-3         <---------TOE2(3) <---------YAB1             <---------ABI4(2) --DOF2          <---------DAG2              <---------TOE1(3)<---------TOE2(3)  --------->YAB1------   tgattttggtgagtgatgaccttatcatatgccttgaaaatgtgtttaagattttcctttcatttatgttaataattaaccattcatatagaagcaccga  20520900                                                                             --------->ATHB12                                                                             <---------ICU4 ---------     ---------->DOF2                                                        =========================   <---------YAB1                                                           <---------YAB1  --------- -->At1g77200                                                               <------ZmHOX2a(2) -->DEAR3(1)                --------->DAG2              <---------DOF5.7(2)<---------ARR11(3) -->DEAR4(1)               ---------->DOF2          <---------ANAC46       --------->ARR11(3)      <- ---ETT(1)             --------->DAG2             <---------ANAC46        --------->GLK1(1) <--------ATHB1 -->DREB2C(2)        ---------->DOF2             <---------MYB52(1)  --------->ZAT14       <---------YAB1 ->DEAR3(2) <-----------ARR10                <------ZmHOX2a(1)       <---------ZAT14   <---------TOE2(3) ----->RAV1(1) <----------DOF2          <-----------HVH21       <---------YAB1        --------->YAB1   caattgtgaaagcagagctttgcaaaagggaaagtgagacatggtcaggacgttgtgtaaacgattatcagtgcagagatcattgcattaacaatgatag  20521000                       <------NtERF2                   --------->ZAT2              --------->ZAT18    -------->HAHB4 <---------MYB46(3)    --------->ATHB12  <---------MYB46(3)                                           <---------AHL20(2)   --------->ICU4 <---------AtMYB61                                            ----------->GT1 >YAB1<---------WOX13(1)  -------->P       <---------YAB1                   --------->DAG2 =====HOX2a_HOX2a --------->ALFIN1      <------ZmHOX2a(2)                  ---------->DOF2 >ATHB12 --------->ARR11(3)            <---------ARR11(3)               ----------------->AG -------- -----ZmHOX2a(1)<---------At4g35610    --------->ARR11(3)       --------------->AGL15   <-----------GT1   aggaaatgatggatattgcgctggtggctacccatggtacagatcatgtttctgtttcttctcttgctaaatataccaaaagtgtttattttacataaaa  20521100                                                               --------->AHL20(1)                                                               <---------AHL20(2)                                                               --------->AHL20(2)                                                               <---------AHL20(1)                                                              --------->YAB1                                                            --------->AHL20(2)                                                          <---------YAB1                                                        >>>>>>>>>GT-1                                                      <-------GAMYB                                                     ----------->GT1                                                     <------MYB83--------->YAB1                                                     <------MYB46(1)                           ------                                                     <---------MYB46(3)                        ------      <-----------TGA1                           <---------MYB46(3)                          <-------      <-----------HVH21          <-------TEIL    --------->ATHB12--------->AHL20(2) <-----------GT1     --------->ANAC46  <---------DAG2           <---------ATHB12<---------YAB1     <---------AHL20(1) ->AHL20(2)        ----------->HVH21   ------->TEIL<--------P<---------YAB1    <---------AHL20(2)   taagtctgcgtcactctatgggtgaccttatgacattcatgtatgtttcaatggttggttaatattataatataagagtatataatatacttcttccatg  20521200  Previous    Next  AGI:  At1g55010.1    Description:  PDF1.5 (plant defensin 1.5). similar to LCR67/PDF1.1 (Low-molecular-weight cysteine-rich 67) [Arabidopsis thaliana] (TAIR:AT1G75830.1); similar to PDF1.2b (plant defensin 1.2b) [Arabidopsis thaliana] (TAIR:AT2G26020.1); similar to defensin [Brassica rapa subsp. pekinensis] (GB:AAN23105.1); contains InterPro domain Gamma thionin; (InterPro:IPR008176); contains InterPro domain Knottin; (InterPro:IPR003614) Range:  from: 20520745    to: 20521070    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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