Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 <---------YAB1                                             --------->YAB1                                        --------------->AGL15                                   --------->KAN4(2)                                  <---------KAN4(1)                                  --------->KAN4(1)               --------->WOX13(1)<------ZmHOX2a(2)                                              -----          --------->AHL20(1)    <---------ARR11(3)                                       <---------AHL20(2)     ===================================HOX2a_HOX2a                                      --------->AHL20(2)     <------ZmHOX2a(1) ---------->DOF2  <---------------AGL15                        --------->AHL20(2)  --------->At4g35610 --------->AHL20(2)<---------DAG2                     <-----------GT1     <----- ------->At4g35610--------->AHL20(2)   ----------------->AG     <-------TEIL  <----------DOF2<------- ---HSFB2a(2)<---------AHL20(2) --------->ARR11(3)             --------->AtLEC2    <----------DOF2   aagcagaggacatatattaatcaaataaagagtagatcattcccttatcaagataaaacataaacatgcatgagttgatacttttctttatataattttt  20485000                            <----------DOF2 --------->TOE2(3)     <-----------GT1                    <----------DOF2       <---------AHL20(2)  <---------AHL20(2)              --------->ARR11(3)    --------->STY1(2)         --------->AHL20(2) ----->ID1    <---------AHL20(1)    <---------STY1(2)      ------>MYB46(1)         ------------>CBF ------GT1 --------->AHL20(2)    <---------ANAC58          ------>MYB83    <------------CBF --ICU4    <---------AHL20(2)    <---------ANAC58        <---------MYB59 <---------AHL20(2)   <------   ccctaaaaacaaattatatattcttttcttcttttgctagctattttcttaattgtgaaccaaattatatactatttcattgtatatcaatagtttcttt  20485100                                                                                                    -                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                  ---                                                      ---------->DOF2                             <--                                                   --------->TOE1(3)                              ===                                                 ------>MYB83                                     ===                                                 -------->P                                      ----                                                 ------>MYB46(1)                               ------                                               --------->AtMYB61                            ---------                                               <---------MYB59                        <----------DOF2        --------->AHL20(2)          --------->YAB1 --------->TOE2(3)                  ===============    --------->AHL20(2)         --------->ANAC55(2) <---------------AGL15    <-----------------------TaNAC69(2) ----DOF2                 ------->TEIL    --------->YAB1             xxxxxxxxxxxxxxxx>smallRNA(s)----   aaccaaaaaaataaaaactgtctctatgtatatatgtaacataatcagaccaaccttaaagagagagagagagagagagacatgttgactttccacacca  20485200         >>>>>>>>>>FUS3        --------->AtLEC2        --------->ANAC46        --------->ANAC58  <---------ANAC58  <---------ANAC58 <-------TEIL -------->ALFIN1 ----->MYC3 ------MYC3 ------->TOE2(2)                                            <---------ANAC58 ----->MYC2                                                 <---------ANAC55(1) ------MYC2                                              ------->MYC3                               - ------>TGA1a                                   --------->GLK1(1)                                   < -------TGA1a                             --------->ANAC58  <---------ANAC46                       <- ===============================bZIP_DOF  --------->ANAC46  <---------ANAC58                       <- ===============================bZIP_DOFXXXXXXXXXXXXXXXXXXXX>MIR2112-5P                            <- -->MYB46(1)                            <---------ALFIN1 <-------MYC2                              <- --->AtMYB61                        --------->ANAC58     <-------MYC3                              <- >ANAC46--------->ANAC58          --------->MYB52(1)     ------->MYC2                       --------- =======bZIP_DOF     <----------DOF2--------->ANAC58  <---------ALFIN1            <---------YAB1  <-- -->MYB83>>>>>>>>>>ABI3    <----------DOF2--------->ANAC58 <-------TEIL---------->DOF2     --------->AHL20(2)   acgtgcgtccatgcaaatgagccctttctctttgccaaacgcacacgcagaaatcaacacatgcgtgtgcatataaagcttctgatcatacaaataaaga  20485300                                                                                                 ====  --------->ZAT18                                                                     <---------ARR14(2)  <---------ZAT14                                                                     --------->ARR11(3)  --------->REM1(2)                                                                   <---------ARR11(3) -------------->AtSPL8                                                                --------->GLK1(2) ---------------AtSPL8                                                                <---------ARR14(3) --------ANAC58                                                                       <-----------ARR10 --------ANAC58                                                                     ----------->ARR10 --------ANAC55(1)                                                               ----------->GT1 ---- --------ANAC46                                                             <---------HSFB2a(2)<----- --------ANAC55(2)                                                          --------->HSFB2a(2)------ ->DOF2               <------ZmHOX2a(1)     <-----------GT1           <---------ATHB12--------->ARR14(3) -----TEIL<---------YAB1                 <---------ICU4  <----------ID1<---------ICU4 --------->ARR14(2)   tgcgtgtacaaaattataggtataggagcgagacacaagagaaatattaccaaaaaatggggacaaaaacccataattctagagggaaaatcttcatgat  20485400                                                                                              ------>ZmHOX2a(2)                                                                                            ---------                                               <-----------GT1                              <--------                                          <----------DOF2                                <---------WOX13(1)                                         <---------DAG2                              <---------ANAC55(2)        ===================================HOX2a_HOX2a                               <---------ANAC46        ------>ZmHOX2a(1)             <-----------GT1      --------->LBD16           --------->ANAC55(2) ==============HOX2a_HOX2a        <---------ARR11(3)      --------->HSFB2a(2)       <---------LBD16 -->ZmHOX2a(2)                    --------->ARR11(3)     <---------LBD16           --------->MYB52(1) ----ARR11(3)     <-----------HVH21 ------>ZmHOX2a(2)<----------DOF2            --------->ANAC46 --->ARR11(3)<---------YAB1<---------TOE1(2)  <-----------GT1                  <---------TOE2(3)   ctatctaatcctagtctcattgtcacttctaggtttgatcttaccttttaaacctcttttccggattacttctccatcttcaacgttacggattgatctt  20485500        --------->ANAC58        --------->ANAC58     --------->LBD16                                                              ------>ZmHOX2a(1)     ------>NtERF2                                                               --------->TOE1(3)     <------NtERF2                                                               --------->TOE2(3)    --------->DEAR3(1)                                                      <---------At4g35610    --------->RAP2.3(2)                    --------->LBD16                  --------->At4g35610    --------->ANAC46          <---------ANAC58                             <---------DEAR3(2)   <---------LBD16            <---------ANAC46                            <---------RAP2.6(2)   --------->RAP2.3(1)--------->ANAC46    --------->ANAC46                <---------DEAR3(1) --------->DEAR3(1)   --------->ANAC58    <---------ANAC55(2)            --------->RAP2.6(3) >ARR11(3)            --------->ANAC58    --------->ANAC55(2)---------->DOF2<------NtERF2 -ARR11(3)>>>>>>>>>>WRKY63    <---------ANAC58       -------->P   --------->GLK1(2)             -----   ccatcgccgcaagtcaacaaaaacccgaaatggcttcgactcatccgtaactatctaccagagaaaagaatccaagtcggcttccttaacatagacgaga  20485600                                                         <----------DOF2                                                       ------>NtERF2                                                   --------->ALFIN1                                                  ------->PIF4                                                  <-------MYC4                                                  ------->MYC2                                                  <-------PIF4                                                  <-------MYC3                                                  <-------MYC2                                                  <-------PIF5                                                  ------->MYC4                               <------MYB46(1)    ------->MYC3                           <---------MYB46(3)     ------->PIF5                       --------->WRKY38(1)       <---------O2                       --------->WRKY12          --------->TGA1a                     <-------PIF5                --------->O2                    <---------O2         <---------At4g35610 <---------MYB52(1)  --------->ANAC46                <---------ANAC46         --------->At4g35610===============================MYC_MYB        <---------GLK1(2)   <-----------HVH21 ------->PIF5                <---------TGA1a --------->ARR14(2)                 -  <---------ANAC58  <---------ANAC46             ===================bZIP_DOF <-----------HVH21     --  <---------ANAC58 <-------TEIL<------MYB83    <---------ALFIN1  <---------ARR14(2)               <-- ----->DOF2--------->CCA1(2)<-------GAMYB      <------------OsbHLH66--------->ANAC46         <-------   aagagcgtgagagctacgaggctcgtggaccgttggtacttaagaacatccacgtgccgcttgatcatatacccaagaatgtcacttggaagagtcttta  20485700                                     --------->ARR14(2)                                     --------->ARR11(3)                   <---------HSFB2a(1)                                    --------->ALFIN1                   <---------At4g35610 ------>ZmHOX2a(2)                <---------ANAC58                   <---------HSFC1(2)<---------ARR14(2)                 <---------O2                   --------->HSFB2a(1)<------ZmHOX2a(2)                 <---------ANAC46         <---------WRKY12           <---------GLK1(1)                   <---------bZIP60(2)        ===============HOX2a_HOX2a  --------->GLK1(1)                   <---------ANAC58    --------->ALFIN1           <---------LBD16                  <---------At4g35610  <---------ANAC46 --------->HSFC1(2)<---------ARR11(3)     --------->GLK1(2)                <------- -------->LBD16 <------ZmHOX2a(1)--------->LBD16          <---------HSFB2a(1)            <---------ANAC58 ------->ANAC46 ==============================HOX2a_HOX2a --------->HSFC1(2)             <---------ANAC58 -------LBD16   =============================HOX2a_HOX2a  --------->HSFB2a(1)       <-----------RAV1(1) ---DOF2<------ZmHOX2a(2)    <-----------HVH21            <---------HSFC1(2)       <---------YAB1   cccggagtggatcaacgaggaagcttctacctgtccggagatccctctccctcagccagaaggttctgatgctaacgtggacgttattgttgctagagtt  20485800               <------NtERF2              <---------ORA47(2)             <---------DEAR3(1)             --------->ETT(1)            <---------ORA47(1)                                                --------->ORA47(1)          <------MYB46(1)                                                     <---------RAP2.6(3)          <------MYB83                                                <-----------ARR10          <---------MYB46(3)                                          --------->GLK1(2)         --------->MYB111(2)                                          ------->TEIL                 ==         <---------AtMYB61                                            <---------ARR14(2)           <-         <---------MYB46(3)                                           --------->ARR14(2)           --         --------->MYB55(2)                                           <---------ARR11(1)          <--         --------->MYB111(1)                                    <------NtERF2--------->RAP2.6(2)  ---        <--------P                                             --------->At4g35610       <-------GAMYB      --------->ATHB12                                         <---------At4g35610       <---------ANAC58      --------->MYB55(2)                                       <------NtERF2 --------->DEAR3(1)<-----      <---------MYB46(3)                                      --------->RAP2.6(2)        <---------ANAC58     <---------AtMYB61                                       <---------RAP2.6(2)        <------MYB83<     <---------YAB1                               ----------->GT1 <---------At4g35610 --------->ALFIN1  ----------->HVH21   --------->DAG2             <---------TOE1(3)<------NtERF2   ---------->DOF2<--- --ZAT6<-------GAMYB ---------->DOF2            <-----------RAV1(2)  <---------ARR14(1) <------MYB46(1)   ccatgtgatggttggtcggcgaataaagggcttagggacgtttttaggcttcaggttaatttggccgcagcgaatctagccgtccaaagtgggttgagga  20485900  Previous    Next  AGI:  At1g54940.1    Description:  PGSIP4 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 4); transferase, transferring glycosyl groups. similar to PGSIP5 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 5), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G08990.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81983.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) Range:  from: 20485357    to: 20488208    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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