Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <---------YAB1        <---------AHL20(1)                                                                   --------        <---------AHL20(2)                                                            --------->ZAT14      <---------YAB1                                                                  <---------ZAT14    --------->YAB1                                                                 <---------ANAC46    <---------ICU4                                                               --------->ZAT14   --------->ICU4                                                                <---------ZAT14   <---------YAB1           <---------AHL20(2)                                <---------ANAC46 ---------YAB1             --------->AHL20(2)                           <---------TOE2(3)    -------- ---------AHL20(2) <---------At5g28300                <---------YAB1   ---------->DOF2--------->ZAT18 -------ICU4      <-----------GT1                 <---------ANAC58    --------->AHL20(2)     <------- ----->ICU4<---------AHL20(2)      <----------DOF2<---------ANAC58    <---------AHL20(2)------->TEIL   atattattattatttttttttaactgcgattaaatctctttgtaaaaaactagcttacgataaatatgcaaattaaagttttgtgaagtgaaccgaatcg  20474000                                                           -------->ATHB1                                                           <---------AHL20(2)                                                           -------->HAHB4                  <----------DOF2                          --------->ATHB51               <---------AHL20(2)                          <---------ICU4               <-----------GT1                             --------->ATHB12          --------->AHL20(1)                              <---------ATHB51          --------->AHL20(2)          <---------YAB1      <---------YAB1          <---------AHL20(2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <<<<<<<<<<WRKY38     <---------ZAT14               ------------>ATHB5    <<<<<<<<<<WRKY26     --------->ZAT18              <----------DOF2    <<<<<<<<<<WRKY43     --------->ZAT14 <----------DOF2  --------->ICU4 ->ARR14(2)<---------AHL20(2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->ETT(1) ->GLK1(2)<---------AHL20(1)        <---------ICU4 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   ----------- --ARR14(2)--------->AHL20(2)      --------->ICU4 <-------TEIL                 ---------->ID1 -------   gttttggtcaaatttatttactttaggtgaactggtcatcatgcttttaagatgcgcttaattattgagtcgattcgatttgtcggattataccaaaaaa  20474100        <---------AHL20(1)        --------->AHL20(1)                                                     <-----------GT1       --------->AHL20(2)                                             ------>MYB83   <---------AHL20(2)                                                 ------>MYB46(1)   --------->AHL20(2)                                                 --------->MYB52(1)           -- ---->AGL15                             --------->MYB52(1)          <---------MYB59                -- -->AHL20(2)  --------->YAB1          <---------MYB59            <-----------GT1               >>>>>>   atgaataaaatatatatcaaaattcttcgaaaatcaatagcctaactaaatcgaacttataaacatataaccaaactgatataacaaaatcgaatcaaac  20474200                                                                                         --------->ANAC58                                                                                         --------->ANAC58                                                                                 -------->P                                                                                 ------>MYB83                                                                 <---------WRKY18(1)    <---------TOE1(2)                                                         --------->ARR14(2)     ------>MYB46(1)                                              ------->GAMYB     ----------->HVH21------>MYB46(1) <---                               --------->AHL20(2)        <---------ARR14(2) -------->P <---------ALFIN1 ---->MYB46(1)                 <---------AHL20(2)     --------->YAB1     <---------MYB52(2) <-------- ---->MYB83           <--------P              ----------->GT1   --------->WRKY12------>MYB83<-------- >>>>MYB80       <---------LBD16           --------->MYB52(1) <---------MYB52(1)<---------ALFIN1 ----   caaatatttgttcgaataactcgggtagaatatttaaaaatcgattaacggaaaaatcagaaccgtttgacccctactaacccaacctcgcacgcttttt  20474300                         <---------MYB46(3)                         <---------DEAR3(2)                        <---------DEAR3(1)                       <---------MYB52(1)                      <-----------HVH21                    --------->MYB46(3)                    <------------AtMYB77               --------->YAB1    <---------YAB1--------->ARR14(2)  <---------ICU4  <---------ARR14(2)                                                    --------->ZAT6 <---------ATHB12 --------->MYB52(1)                      <---------ANAC58        <----------DOF2 ------AHL20(2)--------->TOE2(3)                          <---------ANAC58     --------->ARR11(3) -DAG2      <-----------GT1                               <---------ANAC46     <---------ARR11(3) --- --DOF2<---------YAB1------->GAMYB              --------->LBD16          --------->TOE1(3)       ---- ----->AHL20(2)--------->TOE1(3)              <---------LBD16            --------->TOE2(3)    -------   taaatcattcttataaaccataaccgtcggttttcgcaaattctaacatccgcatttgatgcgtttagtcaagagccttaacatctttttagactagaat  20474400                                                                                                  ---                                                                                                <----                                                                                                -----                                                                                               ------                                                                                              ------>MYB83                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                           --------->ANAC58                                                                                           --------->ANAC58                                                                                           --------->DEAR3(2)                                                                                          --------->RAP2.3(3)                                        <---------ICU4                                    --------->PCF2      --------->ANAC55(2)               --------->ATHB51                                <---------ZAT18     <---------TOE2(3)                  --------->YAB1                        --------->At4g35610 ---     <---------TOE1(3)                  --------->ATHB12                      <---------At4g35610 ---    <-----------GT1                     <--------ATHB1                       --------->ANAC58 ------>MYB46(1)    <---------DOF5.7(2)                 -------->ATHB1             <---------ZAT14      --------->ZAT14    --------->MYB52(1)----------->GT1   <------------ATHB5         --------->ZAT14  --------->TOE1(2)  <---------MYB52(2)*TSS               <---------YAB1              <---------ZAT18  --------->TOE2(2) --------->CBF <---------YAB1          --------->ICU4              --------->ZAT18 ----------->RAV1(2) ----->YAB1  <-----------GT1         --------->WOX13(1)      <-------TEIL  <--------P------>ZmHOX2a(1) -->YAB1 ------->TEIL <---------ANAC46 <---------ATHB12     --------->CCA1(2)--------->ANAC58<-------   aacaattaacgtattttacgaatggagtataaaacaatgcaatcattgagaaatcgcacaagattcaagtgcgcagggtaagctatcctgcgcacccacc  20474500        <---------DEAR3(1)       <---------LBD16 ------>ANAC58 -----MYB55(2) ---->MYB46(3) --->ANAC46               ------>MYB83 -MYB111(2)               ------>MYB46(1) >DEAR3(1)              ------->GAMYB -MYB111(1)           --------->MYB52(1)              ----------->GT1              ------->TEIL >MYB46(3)  <---------At4g35610         <----------DOF2                           --------->MYB52(1) -MYB55(2)  --------->At4g35610       <---------HSFC1(2)                --------->LBD16  <------NtERF2 ------>ANAC58      <---------MYB52(2)--------->HSFC1(2)<---------MYB52(1) <------ZmHOX2a(2) ------>ANAC46    --------->ZAT6      --------->HSFB2a(1)              --------->HSFB2a(2) --ALFIN1 <------NtERF2--------->DEAR3(2)  --------->YAB1              <---------HSFB2a(2)        <<<   cagcaactaggcggagcttaaaactaccgactaaaaccgaagctttcaaaatccatccgttaaaaactggtttcccgatcaaatgaacggcctcgatttc  20474600                                                      --------->ATHB12                                              <------NtERF2                                             --------->LBD16                                            <---------ANAC46                                            --------->ALFIN1                                            <---------DEAR3(1)                                     --                                           <---------LBD16                                         --                                  <------ZmHOX2a(1)  <---------YAB1                                --                    --------->ETT(2)      ------->GAMYB <---------WOX13(1)                        <--          --------->ANAC46       --------->ANAC58    --------->ICU4                   <----------DOF2          --------->ANAC58       --------->ANAC46  --------->YAB1                <---------At4g35610          --------->ANAC58       --------->ANAC58 --------->ICU4           --------->HSFB2a(1)  <----        <---------ALFIN1<-------TEIL   --------->MYB52(1)           <---------ANAC46 <---------ANAC58 <<<<<<TBF1        <---------------------WRI1------>NtERF2      --------->ARR11(3)   <---------ANAC58   ttcttctccccctcgccaattgtcgatacatccacaggaaacaacggcggggatgatgattggggagatttcgtcgactcttccgatgctttcgattcag  20474700              <-------TEIL          <---------YAB1        --------->At4g35610        <---------At4g35610       --------->ALFIN1     ------->GAMYB                    <------NtERF2  --------->MYB52(1)           ------>ZmHOX2a(2) ------->ANAC58               <------ZmHOX2a(2)              ----------->GT1 ------->ANAC58              <---------ARR14(2)          <---------ARR14(2) ---->ZmHOX2a(2)    --------->ANAC55(2)                  --------->ARR14(2)           <---------ALFIN1 ----ZmHOX2a(2)     <---------ANAC55(2)           <-----------RAV1(2)               <---------ALFIN1 -----At4g35610--------->YAB1--------->ARR14(2) <-----------HVH21           --------->PCF5   atcgcaacggtgctgattcatcacataatcggatcgagtcggagaagaagagtcaggcgaattgggttacttctcgtggtccagtgccactctctgtgtt  20474800                                                                                     --------->YAB1                                                                                     <--------ATHB1                                                                                     --------->ATHB12                                                                                    --------->ICU4                                                                                    <---------YAB1                                      --------->ARR14(2)                            <---------ATHB12                                    <---------DEAR3(2)                         --------->ANAC58    --                                    <---------MYB46(3)                         --------->ANAC58   ---                                 <-----------HVH21                             --------->ANAC46  <---                                <---------ANAC58                             <---------DOF5.7(2)-----                                <---------ANAC58                <-------TEIL--------->ARR14(2)  -----                               <-------TEIL        --------->ARR14(2)       --------->ZAT14     <----                 <---------ARR14(2)<---------DEAR3(1)  <---------YAB1   <---------HSFB2a(2)     -----        >>>>>>>>>TBF1         --------->ALFIN1     <---------GLK1(2)    --------->HSFB2a(2)--------->MYB52(1)     >>>>>>>>>TBF1      --------->GLK1(2)          <---------ARR14(2)  <-----------------AGL1   <----   cggagaagaagaagaagacgatacagaatcaagtgcgtcggttccatcgtttggattctcattcgattcgttttccagtaaacgcaatgatagcaacgga  20474900  Previous    Next  AGI:  At1g54905.1    Description:  transposable element gene. copia-like retrotransposon family, has a 4.3e-08 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana) Range:  from: 20473692    to: 20473914    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g54920.1    Description:  similar to hypothetical protein [Vitis vinifera] (GB:CAN77027.1) Range:  from: 20474420    to: 20478825    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version