Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        <---------ZAT18                      --------->ZAT14            <---------ANAC46     <---------MYB52(1)                                                                          <---    <-------GAMYB     --------->ZAT18                    ---------->DOF2                         <--- ->ANAC58----------->TGA1                   ---------->DOF2       <---------GLK1(2)          -------- ->ANAC58----------->HVH21      --------->KAN4(2)<----------DOF2--------->ICU4    ------>ZmHOX2a(1)   atagaccgttgatgacggatgttgttcactcgctcattccccttgttaaagctttcaacaaaagtactgattcttctcggtttcctagccgtagagaaag  20454400           <---------ARR11(3)                             <----------DOF2           --------->ARR11(3)                   <---------AHL20(2)          --------->YAB1                       <---------AHL20(2)               <---------YAB1 ------ANAC58         ----------->HVH21   --------->ANAC55(2)          --------->GLK1(2) ------ANAC58         --------->bZIP60(2) <---------ANAC55(2)         <---------GLK1(2) -->DOF2 <---------YAB1       <----------DOF2  --------->AHL20(2)   ----------->ARR10   cttgtcatttgatgatattatgccatgacactcttttgtttaatatgtattaatttctctcttttaagttgagattctcgttgttattgtatatttgtat  20454500                                                      --------->HSFB2a(2)                                                    <---------ANAC46                                                 <---------WOX13(1)                                <-                                              <---------AHL20(2)                              <------                                              --------->AHL20(2)                              -------                  --------------->AtSPL8  ----------->GT1       <---------ATHB12              <------               --------->ARR11(3)      <---------ZAT6 <---------HSFB2a(2)  --------->ZAT18    -------       ------->TEIL                    <-----------RAV1(1)--------->ANAC46 <---------ZAT18 --------->AHL20(2)   aggtaaatgaatccatttatcttgtactataacttatattagtgttgtttaattgcctagaagtcactcattctaagtccaccaatattcgtataaaata  20454600                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                   --                                                                                                   <-                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                        ----------->GT1                                                                                     --------->PCF5<-                                                                                --------->TGA1a -----                                                                                =====================                                                                                <---------TGA1a <----                                                                                =====================                                                                                <---------O2    <----                                 --------->HSFB2a(2)                            --------->O2  <------                            --------->ARR11(3)                              <---------PCF2    -------                            <---------AHL20(1)                              ----------------->PIF3(1) ----------GT1              <---------ARR11(3)                              <----------------PIF3(2)< ---ARR11(3)                --------->AHL20(1)                             ----------->TCP11(1) ----- -->ARR11(3)          ------>ZmHOX2a(1)       ------->TEIL               <---------ANAC58    <------- ---AHL20(1)         --------->TOE2(3)  <-------TEIL                     <---------ANAC58  --------->YAB1 -->AHL20(1)--------->ARR11(3)   <---------HSFB2a(2)          ------------>CBF <------NtERF2 --------   ttcacaagacttaatgtcttcatccttcaatatatcgagaagtccatgaatctcagactactaggccaattcgttgtgggcctcgtggcccagtaataat  20454700    <---------AHL20(2)    --------->AHL20(2)   --------->AHL20(2)  <---------YAB1 ---------AHL20(2) ------->ATHB1 -------->YAB1 ---------ICU4 -------->ATHB51 ------->HAHB4 ------->ICU4 --------ATHB51 -----HAHB4 ----->ATHB51 ---->HAHB4 ----->YAB1 ------ICU4 -----ATHB1 --------YAB1 ---->AHL20(2) =================bZIP_DOF                         ----------->GT1                                 -- -----YAB1           <---------ZAT2               <-------TEIL                                     -- =================bZIP_DOF                        *TSS                                        ------- -----ATHB51         <---------At4g35610  <---------AHL20(2)              <---------DAG2      ------- ---ICU4             --------->At4g35610 <---------AHL20(2)         --------->YAB1            ------- -->YAB1 ----------->GT1                 --------->AHL20(2)         <---------ICU4           <------- --------HAHB4 --------->DAG2         <---------AHL20(2)    ---------->DOF2<----------DOF2  ------>ZmHOX2a(1) ---->ICU4    ---------->DOF2    --------->ICU4  --------->ARR14(1)--------->ICU4          --------->TOE2(2) --YAB1 --------->DAG2         --------->YAB1   <---------GLK1(2) --------->ANAC58         --------->TOE1(2) ->ICU4---------->DOF2    --------->At4g35610   --------->ARR11(1)--------->ANAC58<-----------GT1  --   aattattaaaaaagtataaagggagctaagctaaaatgatttttttaatagattcgaaaatagaaagtaagcattaccttttaaaaaccttctcctacga  20454800    <---------At4g35610                                                       <---------MYB52(2)    --------->At4g35610                                                     --------->MYB52(1)   <--- ------->ANAC46                                                        <---------ARR11(3)        ---- ------->ANAC58                                                        --------->ARR11(3)        <--- -->ANAC58                   <---------TOE2(3)                        --------->CCA1(1)          ---- -->ANAC58             --------->AHL20(2)                             --------->RVE1(1)          <--- -->ANAC46             <---------YAB1          ---------->DOF2    <---------AHL20(2)    ---------->DOF2 --TOE1(2)             <---------AHL20(2)  ----------->GT1        --------->AHL20(2)<----------ID1 ------->ANAC58     <----------DOF2  ---------->DOF2          --------->AHL20(2)    ----------->GT1 <   aacgccatctgtcttctaactcctttttattaagtttcttaaagaaggttaaagaaaaaccctataaaataaatatcccaacgaaggcgataaaacccag  20454900             <---------GLK1(2)        ------>ZmHOX2a(2)        =====================HOX2a_HOX2a       <------ZmHOX2a(2)       ======================HOX2a_HOX2a      <---------AGP1      --------->AGP1      <---------ARR14(2)      --------->ARR11(3)      --------->ARR14(3)      <---------ARR14(3)      <---------ARR11(3)      --------->ARR14(2)     <---------CCA1(2)                                              <----------DOF2   <---------HSFB2a(2)                                            <---------ATHB12   --------->HSFB2a(2)                                --------->GLK1(2) ------GLK1(2)                                       <---------ARR14(2) ----->ARR11(3)                                      <---------GLK1(2)  <---------TOE1(3) ------ARR14(2)            <---------ALFIN1          --------->ARR14(2) <---------TOE2(3) ----->ARR14(2)           --------->LBD16   --------->ARR14(2)  --------->WOX13(1) ------ARR11(3)       ------>ZmHOX2a(1)     <---------ARR14(2)<---------MYB52(1)           <---------AHL20(2) -----------GT1      <---------ALFIN1       <---------GLK1(2)--------->LBD16  <---------ATHB12      -   attttccagatcttaaattctctcctcccccaattccatcttcgcaaattctccagattcttccgtcaatctttgaggtaatcaattttctcttaaattt  20455000                                                <---------AHL20(2)                                                --------->AHL20(2)                                               --------->AHL20(1)                                  <----------DOF2                                      ------>ZmHOX2a(2)                             ---------->DOF2   <---------AHL20(2)                   --------->YAB1                            --------->YAB1     <---------AHL20(1)                  <---------YAB1          <---------LBD16<---------ICU4        --------->AHL20(2)         <----------DOF2 ---------->RAV1(1)   --------->YAB1   ---------->ID1          ----------->GT1 <---------WOX13(1)   cccaacattttttctgggtttatttcataatcaaagcttttgtcttcaatttatttgttatcgagggctaaaaaaactttgatttatgatcgtttctctt  20455100                      ----------->GT1    <------------------------ANAC81                 <---------AHL20(2)  <---------DAG2                       <---------ICU4                <---------YAB1 <-----------GT1                           <---------YAB1               <---------AHL20(2)    <----------DOF2                     --------->ICU4            ------->TEIL       --------->ZAT6  <----------DOF2<-----------GT1                 <------   gttttgatgaaatgtatttttattttgttaatttcactacttttgcattcttttgtctgatttttatcttgtctgattattgttttgtctgatttttatc  20455200           <---------YAB1                                                                      <-----          --------->TOE2(3)                                                                <---------YAB1        <---------YAB1                                                                    --------->AHL20(2)      <---------ICU4                                                                      <---------AHL20(2)     <---------YAB1                                                    <---------ZAT6    --------->YAB1     --------->ICU4                                             <-------TEIL    <---------YAB1 ------ -----GT1<---------ZAT6     <---------ANAC46         ------->TEIL--------->ATHB12        --------->AHL20(2)   ttgtctgattattgttaatgtgtttaagttgtgttttttttttgttttcaatatgaaacttataaattcattagtgtttttgatgatagaattaaaatta  20455300  Previous    Next  AGI:  At1g54820.1    Description:  protein kinase family protein. similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G58690.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17654.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) Range:  from: 20450983    to: 20454528    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g54830.1    Description:  CCAAT-box binding transcription factor Hap5a, putative. Identical to Nuclear transcription factor Y subunit C-3 (NFYC3) [Arabidopsis Thaliana] (GB:Q9ZVL3); similar to HAP5C (HEME ACTIVATED PROTEIN 5C), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G08970.1); similar to HAP5C (HEME ACTIVATED PROTEIN 5C), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G08970.2); similar to HAP5C (HEME ACTIVATED PROTEIN 5C), DNA binding [Arabidopsis thaliana] (TAIR:AT1G08970.3); similar to Histone-fold/TFIID-TAF/NF-Y [Medicago truncatula] (GB:ABD32395.1); contains InterPro domain Transcription factor CBF/NF-Y/archaeal hi Range:  from: 20454750    to: 20456338    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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