Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          --------->AHL20(2)                                                               <---------AHL20(2)        --------->AHL20(1)                                                               --------->AHL20(2)        <---------AHL20(1)                                           <---------------AGL15        <---------AHL20(2)                           <---------AHL20(2)             <---------AHL20(2)        <---------ARR11(3)                           <---------ARR11(3)             <---------AHL20(1)        --------->ARR11(3) --------->AHL20(2)        <---------AHL20(1)             --------->AHL20(2) ----AHL20(2)              <---------AHL20(2)        --------->AHL20(2)             --------->AHL20(1) ---AHL20(2)              --------->AHL20(2)         --------->AHL20(1)            --------->AHL20(2) ---AHL20(1)       ----------->RAV1(1)----------->GT1--------->ARR11(3)     ----------->GT1<---------YAB1 -->AHL20(2) <-----------GT1         <---------TOE2(3)             --------->AHL20(2)   <---------AHL20(2)   tttttttgaatatattaacaacaacaaaattaatagaatgaggttaatagtttaatatattagcattttttatataagaagtaaattttatttatttttg  20442700                                                                                               <-----                                                                                               ------                                                                                         <---------ANAC55(2)                        --------->AHL20(2)                                               --------->ANAC55(2)                        <---------AHL20(2)                                         <-----------GT1  <                       <---------AHL20(2)                                      <---------AHL20(2)  --                       <---------AHL20(1)                                     --------->AHL20(2)   <-                       --------->AHL20(2)                ---------->DOF2      <---------AHL20(1)  <--             ---------->DOF2      <-----------GT1    --------->YAB1           <---------AHL20(2)-----   aatatttaacaaaaacaaagtttaataaaattagtttaacagtttaaaatagcaataacaaaagtcgaacataaaaacaattttttttcttacttaatat  20442800          <-----------GT1      <----------DOF2 ----AHL20(1) --->AHL20(1) ---------AHL20(2)                     --------------->AGL15 ------->AHL20(1)           <----------DOF2            <-----------GT1   --------->ARR11(3) --------AHL20(1)        --------->ARR11(3)       <---------AHL20(1)     <---------ARR11(3) -------AHL20(2)         <---------ARR11(3)       --------->AHL20(1)  <-----------GT1 ---->AHL20(2)    <------ZmHOX2a(1)    <---------------AGL15     <---------TOE2(3)   atatatttcttttttcgataggattaagaacttttgtatttctatttttaaaaatattaacaaaattaagtttaacatcttaagttttaaaaatttggca  20442900                   <---------YAB1                  <---------AHL20(2)                <---------AHL20(2)                                                                  <              <---------AHL20(2)                                                                 ----          <---------ANAC55(2)                                                                    ----        --------->AHL20(2)                                                                       ----    --------->AHL20(2)                                                                       --------    <---------AHL20(2)                                                                       ========   --------->AHL20(2)                                   <---------TOE2(3)      <-------TEIL  --------   <---------AHL20(2)    <----------DOF2          --------->ICU4       <---------ZAT14    --------->YAB1   aatttttaaattacatatatttttattcttttgtttttgaaaatagggagtaatagttaatgtagttatagactatagagatgcattgtcaacaataaaa  20443000            <---------YAB1         --------->At4g35610   <-----------HVH21  --------->bZIP60(2)  ================================================MYC_MYB  --------->ANAC58  --------->ANAC46  ==============================================MYC_MYB  <---------O2  <---------TGA1a  --------->O2   --------->AHL20(2)  --------->TGA1a<---------AHL20(2)  --------->ANAC58  <---------ARR11(3) ------>NtERF2  --------->YAB1                                                          <-----------GT1 ---------ALFIN1<---------AHL20(2)                                                  --------->ARR11(3) ----->ANAC58   --------->AHL20(2)         <------MYB83                             <---------ARR11(3) ----->ANAC58<---------ICU4                <------MYB46(1)                     --------->LBD16     -- ----->ANAC46<--------HAHB4              <--------P                           --------->HSFB2a(2)  -- ->AHL20(2) --------->ICU4              <-------GAMYB                   --------->TOE2(3)          <- ===========bZIP_DOF--------->ARR11(3) <---------MYB46(3)         --------->AHL20(2)--------->GLK1(2) -->DOF2----------->RAV1(1)           --------->ALFIN1     <---------LBD16    <---------HSFB2a(2) ---   cgccacgtcgcagcataattaaaatcttttgcacaaaaatgtggttggccttagccttggccctggaattaaaacattatccagaaaatcttacatttcc  20443100     ------>ZmHOX2a(1)                               --------->ARR14(3)     ========================HOX2a_HOX2a             --------->GLK1(2)    --------->TOE1(3)                                <-----------ARR10  <---------ATHB12                                   <---------ARR14(3) *TSS<-----------HVH21                               --------->ARR14(2) ------>MYB83                                        --------->ARR11(3) ------>MYB46(1)                                     <---------ARR11(3) ------->AtMYB61                      --------->ANAC58 ------->MYB46(3)     <------ZmHOX2a(2)        ----------->RAV1(1) --------ALFIN1      --------->ARR14(2)       <----------ID1        --------->ZAT14 --------->CBF<----------DOF2         --------->ANAC58              <---------ZAT14   accaatccttcacttcctttcacgatccaaaacaaaacacaagaaaatgcaacaaaatcttctccatctctgaactcaaaaactcattcactgagaaaaa  20443200                      <---------At4g35610                                  --------->TGA1a                      --------->At4g35610                                  --------->bZIP60(2)                    --------->ZAT14                                        --------->O2                    --------->ZAT18                                        --------->ANAC46                    <---------ZAT18                                       ------>MYB46(1)                    --------->SPL7                                        ------>MYB83                  <-------PIF5                                           <---------ALFIN1                 --------->TGA1a                                     ------>MYB46(1)                 <---------TGA1a  ------>ZmHOX2a(1)                  ------>MYB83               <------------OsbHLH66                       --------->REM1(1)           xxxxxxxxxxxxxx    <---------HSFC1(2)<---------ZAT18                ---------->ID1<---------MYB59  --------->YAB1    --------->HSFC1(2)--------->ZAT18        <---------ALFIN1<---------At4g35610   <-------TEIL <---------GLK1(1)------->PIF5 ------>ZmHOX2a(1)--------->TOE2(3)  --------->AtMYB61--------->ATHB12   tggagacccttctctcccctcgtgcgctctctcctcctctcaatcccaaacctttgtcccttcaccagaccaaacccacttcacattcattgtctctctc  20443300              <---------LBD16                 --------->ZAT14         <---------DAG2                       <---------ZAT14      --------->AtMYB61                     --------->ANAC46      <---------ALFIN1                   <---------ZAT18                                   --------->At4g35610      --------->DEAR3(1)                 <-------TEIL                                 <------ZmHOX2a(1)     --------->MYB46(3)                  <---------ZAT14                            --------->ANAC58    ------>MYB46(1)                 <---------LBD16--------->LBD16  >>>>>>>>>GT-1   --------->ANAC58    ------>MYB83--------->LBD16  <---------ALFIN1<---------LBD16 ----------->GT1--------->ANAC58   --------->ANAC46      <---------ALFIN1--------->ZAT14  --------->ANAC58      --------->ANAC58  --------->MYB46(3) ------>ZmHOX2a(1)--------->LBD16     --------->ANAC58  <-------TEIL   <---------At4g35610 xxxxxxxxxxxxx>smallRNA(si3)--------->AtMYB61 ---------->DOF2--------->GLK1(2)---------->DOF2   <----   aaaacccaccaccttctccggtcctaaacacctctccacccggttcactaaaccggaatcaagaaactggttaatagatgcaaagcaaggactagctgct  20443400                                                                            <---------ALFIN1<--------                                                                ------>ZmHOX2a(1)           <--------                                                               --------->ANAC46             <--------                                                               --------->TOE1(3)            ---------                             <-----------RAV1(1)               --------->TOE2(3)            <--------       --------->ZAT6      <---------At4g35610              --------->ARR11(3)           --------->TOE2(2)  <---------DAG2    <----------DOF2                         <---------ARR14(2)   ---------->DOF2  <----------DOF2   <---------DAG2       <----------DOF2    --------->ARR14(2) --------->AtMYB61 ------DOF2  --------->ZAT6----------->RAV1(2)              <---------ARR11(3)--------->ANAC46   ttagctttatctctaactctcactttctcacctgttggcactgctttagcctctgagttcaatatcctcaacgatggtccacctaaagaaacttacgtag  20443500                                      ------>ZmHOX2a(2)                                     <------ZmHOX2a(2)                                    <---------ARR11(3)                                    <---------ARR14(2)                                    --------->ARR14(2)                                    <---------AGP1                                    --------->AGP1 ----------->HVH21                  --------->ARR11(3) ----------->TGA1                  <---------At4g35610 -ANAC46                           <---------CCA1(2) -ANAC58                          ----------->ARR10        ------>ZmHOX2a(2) -ANAC58                       <-----------HVH21         --------->ARR11(3) >ANAC55(2)             ----------->TGA1                 <---------ARR11(3) -ANAC55(2)             ----------->HVH21       <----------DOF2       ---------->DOF2   tcgatgacgctggtgttcttagtcgagtgacgaagtcagatcttaagaagcttttgtctgatcttgaatacagaaagaaactgagactcaatttcatcac  20443600  Previous    Next  AGI:  At1g54780.1    Description:  thylakoid lumen 18.3 kDa protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO17663.1); contains InterPro domain Protein of unknown function DUF477 (InterPro:IPR007621) Range:  from: 20443101    to: 20444826    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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