Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          <---------ANAC46                                                                                       --------->At4g35610          <---------ARR11(3)                                                           <---------LBD16     <-------TEIL                                                                <-------TEIL ----------->ARR10                                  --------->ANAC58          <---------At4g35610 ---->ANAC58                                        --------->ANAC58---------->DOF2<----------DOF2 ---->ANAC58                                   ---------->DOF2 ---------->DOF2--------->ZAT2 -->MYB46(3) <----------DOF2                 <------NtERF2 --------->ANAC58   <---------ZAT2 --->DOF2 --------->ARR11(3)              <------ZmHOX2a(1)<----------ID1     <------NtERF2 >P --------->CCA1(2)                --------->ALFIN1      --------->ANAC58   --------->At4g35610   gcgaagattcaagagctttgcaaagtatacaatagaatggtggaggaggcaaagacggaagaagccaaagtaaagaaggcagctgcattagcggagacaa  20437900                       ---------->DOF2                    <---------ANAC46                  <---------ANAC46               <---------ANAC58           --------->ALFIN1               <---------ANAC46           <---------------------WRI1               <---------ANAC58        --------->ALFIN1              <-------TEIL      ------>ZmHOX2a(2)            --------->ARR14(2) <------ZmHOX2a(2)            <---------ARR14(2)<---------ARR14(2)           ===========================HOX2a_HOX2a                            --------->DAG2        --           ============================HOX2a_HOX2a                          ---------->DOF2    ------           <------ZmHOX2a(1)  --------->ARR14(2)<---------ARR11(3)    --------->MYB52(1)    <xxxxxxxx         <---------TOE2(3) --------->ALFIN1     --------->ARR11(3)  <---------ARR11(3)    <----------DOF2  --------->LBD16--------->ALFIN1 ---------->DOF2<------ZmHOX2a(2)  --------->ARR11(3)  --------->ZAT18   tgcccgtagatgaggatgcgtggtggaaagtggatccaaaggaggtggaagatcacgaagaggcgaagaagataatggaaaagtgtgaagggctctatga  20438000                                                                                 <---------AHL20(2)                                                                                 <---------YAB1                           ------>ZmHOX2a(2)                                 <---------ARR11(3)                          ================HOX2a_HOX2a                        --------->ARR11(3)                          <------ZmHOX2a(2)                                <---------TOE2(3)                         --------->ARR14(2)                           <---------ICU4                      --------->ANAC58                                --------->ATHB12                      --------->ANAC58  --------->At4g35610           --------->YAB1           <-----                --------->ZAT2       --------->GLK1(1)                -------->HAHB4         <-------                --------->At4g35610  <---------GLK1(1)               <---------YAB1         <------ZmHOX2a(2)             <---------ZAT2===============HOX2a_HOX2a                --------->ICU4 --------->ICU4             --------->At4g35610    ----------->ARR10         ------>ZmHOX2a(2) --------->AHL20(2)             <---------At4g35610   <------ZmHOX2a(1)--------->YAB1   <---------ATHB12      <---------ARR11(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->GLK1(2)  <---------ATHB12 <---------YAB1  --------->ARR11(3) ------->GLK1(2)<---------At4g35610==================================HOX2a_HOX2a<---------AHL20(2) --->YAB1   ------->TEIL <---------ARR14(2)      --------->YAB1     <---------TOE2(3)<---------ICU4 xxxxxxxxxxxxxxxsmallRNA(s2) ---------->DOF2     <---------ICU4    --------->YAB1--------->AHL20(2) <   gaaactgtgtaatgaagctgctgcaaggatccaaagaggagatgctgagaataataacaaatgatccattaatgattaagattttaattagtagatcatt  20438100     --------->ANAC55(2)     <---------ANAC55(2)   --------->AHL20(2)                                                                       ---------   <---------AHL20(2)                                                               --------->REM1(1) ----YAB1                                         <----------DOF2      <---------YAB1       --------- --ICU4  <---------YAB1      <---------YAB1  <----------DOF2    <---------YAB1    --------->HSFB2a(2) ---------ICU4          <---------ICU4     ---------->ID1<-----------GT1          <---------HSFB2a(2)   actaattaagtatttttgagtcttaagaattatgtttttttttttgtcttttcttttttatacattatgaattgttattgttttctacaacatccagcaa  20438200                                                                                                    -                                                                    --------->WOX13(1)          <----                 --------->AHL20(2)                              <---------ARR11(3)       --------->TOE1(3)                 <---------AHL20(1)                          <---------ANAC58 ------------>CBF  -----    <---------TOE2(3)        ---------->DOF2           ------------>CBF--------->YAB1     --------->TOE2(3) >ANAC58         --------->AHL20(1)              <---------MYB52(1)------>ZmHOX2a(2)     --------->ZAT6 >ANAC58------->TEIL<---------AHL20(2)    ---------->DOF2    <---------ANAC58--------->ANAC46  <-----   tggattaatgaaactgaaatattttatacataaaagaagcccattacagccattaggcccaattcgtgatctatcatctactcaatctctaaccctaata  20438300      *TSS<---------At4g35610     --------->YAB1          --------->ARR11(3)    <---------ATHB12         <---------ARR11(3)                                     --------->HSFB2a(2) ----------->CBF     ------>ZmHOX2a(2)                                     <------ZmHOX2a(1) -----ARR11(3)     <---------ARR14(2)                                --------->At4g35610 ---->ARR11(3)     --------->ARR14(2)--------->ZAT6          <----------DOF2        <---------HSFB2a(2) ----CCA1(2)   --------->LBD16 ------>ZmHOX2a(2)<-----------GT1      <---------At4g35610       <-----   tctccaatcttcatctccgtcgatctccattgatctctaacactaaaattctactactcttcactttctacagcttaggaagagttctcgacaagctgat  20438400                                                                 --------->YAB1                                                                 <------------ATHB5                                                                 --------->ATHB51                                                                 <--------ATHB1                                                                 <---------ICU4                                                                <---------ATHB51                                                              --------->YAB1                                      ----------->HVH21      <---------------AGL15          ------>ZmHOX2a(2)                                     <-----------HVH21      <-----------------AGL1  --------->MYB46(3)                                   --------->LBD16         <-----------GT1          <---------MYB55(2)        <---------HSFB2a(2)       <---------ANAC58  --------->ANAC58               -------->P        --------->HSFB2a(2)       <---------ANAC58  --------->ANAC58    <------NtERF2   ----------->HVH21 ----GLK1(2)                     <---------LBD16 ---------->DOF2--------->ICU4   --------->MYB46(3)   tcttcgagttctcgacaagtttcagtgtttttgtttccgggtcacagagaacaaaggcaatttacaataatggcagagactaaacaaccactgatcggtc  20438500                             ------>ZmHOX2a(1)                      <---------ANAC58                      <---------ANAC58                           --------->At4g35610                  --------->HSFB2a(2)                            <---------At4g35610             --------->HSFB2a(1)                                 <---------ZAT2             <---------HSFC1(2)                                  --------->ZAT2             --------->HSFC1(2)                                  <---------------------WRI1          ---------->DOF2   --------->TOE1(3)                    ----------->RAV1(2)  <---------ANAC58         --------->AtMYB61  --------->TOE2(3)           --------->ANAC58              <---------ANAC58        --------->MYB46(3)<---------YAB1                --------->ANAC58       <-----------HVH21   <-   ttaaatgggaaccaaagcttccaggcttatccttagacttgaaaactggttcaaccagaagcaaaacagctgagagttctaagtcagagcttgttgatgg  20438600                      --------->ANAC46                      --------->ANAC58                      --------->ANAC58                    --------->TOE1(2)                   ------>ZmHOX2a(2)                -------->HAHB4             ------>MYB46(1)             ------>MYB83           <---------MYB46(2)           <---------MYB111(1)         --------->ATHB12                                             <          --------->ANAC46            --------->ICU4                                    <----------DOF2        <---------ALFIN1              <---------YAB1                           <--------P        ==== ---------DOF2 <---------ATHB12<-----------GT1         ---------->DOF2       ----------->GT1     ----   tctttgtcttccacctaatgatccaaggaagattaacaagatgattagaaaacaactcaaagacactactggttctaactggtaactcttctttatctcc  20438700                              --------->AHL20(2)                              <---------AHL20(2)                             --------->AHL20(2)                             <---------AHL20(2)                        --------->At4g35610                         <---------YAB1                                --------->ZAT2   --------->LBD16                       ----------->GT1                                 <---------ZAT2   =============                     <---------ANAC58                                  <---------At4g35610                     <---------ANAC58                               <---------ANAC58    =============                     <---------ANAC46                               <---------ANAC58    ------>ZmHOX2a(1)                   --------->LBD16                           ----------->ARR10        ----------->RAV1(2)                  <---------RAP2.6(2)                    <------MYB46(1)       --------->YAB1 ---------REM1(2)------>ZmHOX2a(2)                       <------MYB83 <---------ATERF1(1) =======================HOX2a_HOX2a                   --------->ARR14(2)    ======================RAV -->ZmHOX2a(1)   <---------LBD16                      <---------ARR14(2)    ----------->RAV1(1) -----   tctactcggattagtttgatccggcttgtgattaaattgtatttcttcaaactgtggataggtttgatatgcctgctccaacaatgactcctgagttgaa  20438800  Previous    Next  AGI:  At1g54760.1    Description:  AGL85; DNA binding / transcription factor. similar to AGL64, transcription factor [Arabidopsis thaliana] (TAIR:AT1G29962.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) Range:  from: 20437579    to: 20438064    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g54770.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G30495.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G30495.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO70928.1); contains InterPro domain Fcf2 pre-rRNA processing (InterPro:IPR014810) Range:  from: 20438306    to: 20439675    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version